Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06229
- Subject:
- NR_028388.2
- Aligned Length:
- 5119
- Identities:
- 1542
- Gaps:
- 3576
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTAAGCTTCGACGCAGGAGGCGGGGCTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCGT 74
Query 1 -------------------------------ATGGCCTCAAACGATTATACCCAACAAGCAACCCAAAGCTATG 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGCTTGCTTGCCTGTGCGCGCGTGCGCGGACATGGCCTCAAACGATTATACCCAACAAGCAACCCAAAGCTATG 148
Query 44 GGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTACGGACAGCAGAGTTACAGT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTACGGACAGCAGAGTTACAGT 222
Query 118 GGTTATAGCCAGTCCACGGACACTTCAGGCTATGGCCAGAGCAGCTATTCTTCTTATGGCCAGAGCCAGAACAC 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGTTATAGCCAGTCCACGGACACTTCAGGCTATGGCCAGAGCAGCTATTCTTCTTATGGCCAGAGCCAGAACAC 296
Query 192 AGGCTATGGAACTCAGTCAACTCCCCAGGGATATGGCTCGACTGGCGGCTATGGCAGTAGCCAGAGCTCCCAAT 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGGCTATGGAACTCAGTCAACTCCCCAGGGATATGGCTCGACTGGCGGCTATGGCAGTAGCCAGAGCTCCCAAT 370
Query 266 CGTCTTACGGGCAGCAGTCCTCCTATCCTGGCTATGGCCAGCAGCCAGCTCCCAGCAGCACCTCGGGAAGTTAC 339
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGTCTTACGGGCAGCAGTCCTCCTACCCTGGCTATGGCCAGCAGCCAGCTCCCAGCAGCACCTCGGGAAGTTAC 444
Query 340 GGTAGCAGTTCTCAGAGCAGCAGCTATGGGCAGCCCCAGAGTGGGAGCTACAGCCAGCAGCCTAGCTATGGTGG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGTAGCAGTTCTCAGAGCAGCAGCTATGGGCAGCCCCAGAGTGGGAGCTACAGCCAGCAGCCTAGCTATGGTGG 518
Query 414 ACAGCAGCAAAGCTATGGACAGCAGCAAAGCTATAATCCCCCTCAGGGCTATGGACAGCAGAACCAGTACAACA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAGCAGCAAAGCTATGGACAGCAGCAAAGCTATAATCCCCCTCAGGGCTATGGACAGCAGAACCAGTACAACA 592
Query 488 GCAGCAGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTAACTATGGCCAAGATCAATCCTCCATGAGTAGTGGT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCAGCAGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTAACTATGGCCAAGATCAATCCTCCATGAGTAGTGGT 666
Query 562 GGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCAGAGTGGTGGAGGTGGCAGCGGTGGCTATGGACAGCAGGA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCAGAGTGGTGGAGGTGGCAGCGGTGGCTATGGACAGCAGGA 740
Query 636 CCGTGGAGGCCGCGGCAGGGGTGGCAGTGGTGGCGGCGGCGGCGGCGGCGGTGGTGGTTACAACCGCAGCAGTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCGTGGAGGCCGCGGCAGGGGTGGCAGTGGTGGCGGCGGCGGCGGCGGCGGTGGTGGTTACAACCGCAGCAGTG 814
Query 710 GTGGCTATGAACCCAGAGGTCGTGGAGGTGGCCGTGGAGGCAGAGGTGGCATGGGCGGAAGTGACCGTGGTGGC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGGCTATGAACCCAGAGGTCGTGGAGGTGGCCGTGGAGGCAGAGGTGGCATGG-------------------- 868
Query 784 TTCAATAAATTTGGTGGCCCTCGGGACCAAGGATCACGTCATGACTCCGAACAGGATAATTCAGACAACAACAC 857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ---------------GGCCCTCGGGACCAAGGATCACGTCATGACTCCGAACAGGATAATTCAGACAACAACAC 927
Query 858 CATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTA 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CATCTTTGTGCAAGGCCTGGGTGAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGATTGGTATTA 1001
Query 932 TTAAGACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TTAAGACAAACAAGAAAACGGGACAGCCCATGATTAATTTGTACACAGACAGGGAAACTGGCAAGCTGAAGGGA 1075
Query 1006 GAGGCAACGGTCTCTTTTGATGACCCACCTTCAGCTAAAGCAGCTATTGACTGGTTTGATGGTAAAGAATTCTC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGGCAACGGTCTCTTTTGATGACCCACCTTCAGCTAAAGCAGCTATTGACTGGTTTGATGGTAAAGAATTCTC 1149
Query 1080 CGGAAATCCTATCAAGGTCTCATTTGCTACTCGCCGGGCAGACTTTAATCGGGGTGGTGGCAATGGTCGTGGAG 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CGGAAATCCTATCAAGGTCTCATTTGCTACTCGCCGGGCAGACTTTAATCGGGGTGGTGGCAATGGTCGTGGAG 1223
Query 1154 GCCGAGGGCGAGGAGGACCCATGGGCCGTGGAGGCTATGGAGGTGGTGGCAGTGGTGGTGGTGGCCGAGGAGGA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GCCGAGGGCGAGGAGGACCCATGGGCCGTGGAGGCTATGGAGGTGGTGGCAGTGGTGGTGGTGGCCGAGGAGGA 1297
Query 1228 TTTCCCAGTGGAGGTGGTGGCGGTGGAGGACAGCAGCGAGCTGGTGACTGGAAGTGTCCTAATCCCACCTGTGA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTTCCCAGTGGAGGTGGTGGCGGTGGAGGACAGCAGCGAGCTGGTGACTGGAAGTGTCCTAATCCCACCTGTGA 1371
Query 1302 GAATATGAACTTCTCTTGGAGGAATGAATGCAACCAGTGTAAGGCCCCTAAACCAGATGGCCCAGGAGGGGGAC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAATATGAACTTCTCTTGGAGGAATGAATGCAACCAGTGTAAGGCCCCTAAACCAGATGGCCCAGGAGGGGGAC 1445
Query 1376 CAGGTGGCTCTCACATGGGGGGTAACTACGGGGATGATCGTCGTGGTGGCAGAGGAGGCTATGATCGAGGCGGC 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CAGGTGGCTCTCACATGGGGGGTAACTACGGGGATGATCGTCGTGGTGGCAGAGGAGGCTATGATCGAGGCGGC 1519
Query 1450 TACCGGGGCCGCGGCGGGGACCGTGGAGGCTTCCGAGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGGCCC 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TACCGGGGCCGCGGCGGGGACCGTGGAGGCTTCCGAGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGGCCC 1593
Query 1524 TGGCAAGATGGATTCCAGGGGTGAGCACAGACAGGATCGCAGGGAGAGGCCGTAT------------------- 1578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 TGGCAAGATGGATTCCAGGGGTGAGCACAGACAGGATCGCAGGGAGAGGCCGTATTAATTAGCCTGGCTCCCCA 1667
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 1668 GGTTCTGGAACAGCTTTTTGTCCTGTACCCAGTGTTACCCTCGTTATTTTGTAACCTTCCAATTCCTGATCACC 1741
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 1742 CAAGGGTTTTTTTGTGTCGGACTATGTAATTGTAACTATACCTCTGGTTCCCATTAAAAGTGACCATTTTAGTT 1815
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 1816 AAATTTTGTTCCTCTTCCCCCTTTTCACTTTCCTGGAAGATCGATGTCCCGATCAGGAAGGTAGAGAGTTTTCC 1889
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 1890 TGTTCAGATTACCCTGCCCAGCAGGAACTGGAATACAGTGTTCGGGGAGAAGGCCAAATGATATCCTTGAGAGC 1963
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 1964 AGAGATTAAACTTTTCTGTCATGGGGAAAGTTGGTGTATAAATGAGAAATGAAGAACATGGGATGTCATGAGTG 2037
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2038 TTGGCCTAAATTTGCCCAGCTATGGGGAATTTTTCCTTTACCACATTTATTTGCATACTGGTCTTAGTTTATTT 2111
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2112 GCAGCAGTTTATCCCTTTTTAAGAACTCTTTGATCTTTTGGCCCTTTTAATGGTGAGGCTCAAACAAACTACAT 2185
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2186 TTAAATGGGGCAGTATTCAGATTTGACCATGGTGGAGAGCGCTTAGCCACTCTGGGTCTTTCACAGGAAGGAGA 2259
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2260 GTAACTGAGTGCTGCAGGAGTTTGTGGAGTGGAGTCAGGATCTAGGAGGTGAGTGACTCCCTTCCTAGCTGCCC 2333
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2334 TGGTGAACAGCGCTTGGGTAGATACCTGCTATAAGGAGACTGGTCTGGCTGGGTTACTTTCACATCCTGCCTGT 2407
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2408 ACTCAGAGGGCTTGAGGTCATTGACATTATGAGATTTTAGGCTTGATCCCTTTTTGATTGGAGGGTGGAAGGCC 2481
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2482 CTCCTAAGGGAATGATAAGTGATAAGAGGGGGAAGGGGTTGCAGCCAATGAGTTAAAACCTTAGAGCAGTGCTC 2555
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2556 CTCAGCCTCTTACCATGTGGTTGTAAACTTGCACGTACCTGCCAACCAGTTATTTAGCATGCTTTTTATTTTAG 2629
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2630 TTACACAGAGCGTAACATTAACCCAAGAGCAGAAAGGTTTTATTTACAGGGTTTTCGAACTTGGTTTGTAAGAC 2703
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2704 AGCTGCCATCACAAGCATAGCTTACAAATGTGCTGGGGACCCCTAATTGGGAAGTGCTTTCCTCTCAAATTTTT 2777
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2778 ATTTTTTATTTTTAGAGACAGAGTCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTG 2851
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2852 TAGCCTCTGCCTCCTGAGTTTAAGCGATTCTCCTGCCTCAGGAGAATCCCAGCTTCTGAGTAGCTGAGACTACA 2925
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 2926 GGCGTGGGCCACCATGCCCACCTAGTTTTTGCATTTTTAGTGGAGGTGTGGTTTCACTGTGTTGGCCAGGCTGG 2999
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3000 TCTCTTAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCGC 3073
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3074 TGCATCTGGCCATCCTCTCAAATTTTCAAGTGTTCCACAAGTATGTTCTCTACTGAAGAGTTGCTGCATCCTTG 3147
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3148 AATCTTGGGTGATTTGAGGCACAGAAACTATGACTTTATTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGC 3221
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3222 TGGAGTGCAATGGCACGTTTTTCGGCTTACCGCAACTGCCGCCTCCTGGGTTCAAGCGATAGCTGGGATTACAG 3295
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3296 GCATGCGCCACCATGCCCAGCTAATTTATTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTG 3369
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3370 GTCTCGAACTCCCGACCTCAGGTGATGTGCACACCTCAGCCTCCCAATAAACCATGACTTTTAAGAGGAATAGC 3443
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3444 AGGTTTACTTCCCCTGCCAGCATTGGGGTGCTCTCTAAGCAACAGTAGGCGGAGAGTGGTCTGGCGTATTAAAA 3517
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3518 ACAAAGGATCGTCAAGTGGGCCTTCCCAGGCATTGCTTTGACTTAGTACATGTAGAGGATGTGGCAGTTCTCTC 3591
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3592 CGTCCCTGCCACTGCTGGTTTCTTTGTTAAATGTTTAGTTGAAATGGCCTGATACGATATTTGAGTAGTTCACT 3665
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3666 GTTGGTGCTTTGCCTAGCAGGATTCTAATCTTGCTTTGGTTGTGGTCCCCTGATGCCCTCCTGTTAGGAGTGGA 3739
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3740 GGAGGTCGAAGCTCCTTGTAAGATATGATTACTGGGACCATTAGTGTCAAGTTCCTGTGTCCTTCAAATGGCAT 3813
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3814 ATGTGATTGGCCTTGACCTTAAAAGGAAATAGGGTCCCAGGTGACTGTTTAGTGGGTAGGTCCAGTTTGGGGGG 3887
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3888 ATCTTCCAGGAGAATGGATAGAGACACCTAGCAGCAGAGAGAACATTGGTGCCTCTCAAGCCAACCTCCCACCT 3961
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 3962 CAGCCTCCCAAGTAGCTGGGACTACAGGTGCTTCCTCGCTACCACACCTGGGTAATTTTTTTTTTAATTACTTT 4035
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4036 TTTTTTTTTAAGAAACAGGGTTTCACTGGGTTGCCCAGGCTGGTCTTGAACTGGCCTCAAGTGACCTGCCTGCC 4109
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4110 TCAGCCTCCCAAAGTGCTGGGATCACAGGTGTGACCCACTGCGTTTGGCCAGAATACTCTATTCTTACTGAATG 4183
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4184 ATTGAAATCTGTCTTGAAGCATTAGGTGTCCCATTTTTGTGAGTTGGAATTGGGACAGGCTAAGTAGGAAGTGA 4257
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4258 GGAGGGTGGGGAGAGCTGTGCTGTAGGTCTGTTTGTCCCTTCCTTGATGTAGCCTTCAGTTAGCCCTTTCAGCT 4331
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4332 TTTTTCCCCATCTTGTGCCGGGCCTTCCTGGGTTTCAGTACTTGGATGTAGGGCTGCAGTTATGTCAGTGGTGG 4405
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4406 GTAGATTGACCAGGAATTAAGGTCTAGGGTCCAGCCCATGTGAGACTTGACTCACTGATCTACCTTTAGGCATG 4479
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4480 TCTTCCTTCCAGTCTCATCCTTTTTAAATTTTTTTTTTTTTTTTGAGACGGTCTCACTCTCACCCAGGCTGGAT 4553
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4554 TGCAGTGGTGTGATCTCGACCAACTGCAACCTCTGCCTCCCACCCGCAAGCTATCTGCCCACCTCAGCCTCTGG 4627
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4628 AGTAGCTGGGACGGGACTACAGGCACCTGCCACCATGACTGGCTAATTTTTTTTTGTATTTTTTGTGGAGATGG 4701
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4702 GGTCTTGCCATGTTGCTCAGGCTGGTCTGGTCTCAAAACTGCTCTGGGCTCAAGTGATTGTCCCACTTTGGCCT 4775
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4776 CCCAGAGTGCTGGGATTAAGGTGTGAGATACTGTGTCCGGCTATGAAAATTTTATTTTTAATTAACTTGTATAT 4849
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4850 ATTTATGGGGTACAATGTCCTATTTCTGTACATGTACACATTGTGGAATCAAATCAGGCTAATATATCCATCAC 4923
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4924 TTCATATCATTAGCATGAATGAGAACATACAAAGCCACTCTTAGAAAATTTTGAAATTTATGTTATTTCAGCCC 4997
Query 1579 -------------------------------------------------------------------------- 1578
Sbjct 4998 TTTTATGCTGGAGGTTGCAAATGTTTTGTGAATAATCAGACCAAAAATAAAAACAAAAAATGATTGACTTCAGT 5071
Query 1579 ------------- 1578
Sbjct 5072 CATTCAGTAAGAA 5084
