Nucleotide Global Alignment

Description

• Query: ccsbBroad304_06413
• Subject: NM_010480.5
• Aligned Length: 2325
• Identities: 1714
• Gaps: 339

Alignment

Query    1  ATGCCTGAGGAAACCCAGACCCAAGACCAACCGATGGAGGAGGAGGAGGTTGAGACGTTCGCCTTTCAGGCAGA  74
            ||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||.||.||||||||||||||
Sbjct    1  ATGCCTGAGGAAACCCAGACCCAAGACCAACCAATGGAGGAGGAGGAGGTCGAGACCTTTGCCTTTCAGGCAGA  74

Query   75  AATTGCCCAGTTGATGTCATTGATCATCAATACTTTCTACTCGAACAAAGAGATCTTTCTGAGAGAGCTCATTT  148
            ||||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||.|
Sbjct   75  AATTGCCCAGTTAATGTCCTTGATCATCAATACCTTCTACTCGAACAAAGAGATCTTTCTGAGGGAGCTCATCT  148

Query  149  CAAATTCATCAGATGCATTGGACAAAATCCGGTATGAAAGCTTGACAGATCCCAGTAAATTAGACTCTGGGAAA  222
            |.||||||||.||.||..||||.||||||||.||.||.|||.||||.||.|||||||||.|.|||||.|||||.
Sbjct  149  CCAATTCATCGGACGCTCTGGATAAAATCCGTTACGAGAGCCTGACGGACCCCAGTAAACTGGACTCGGGGAAG  222

Query  223  GAGCTGCATATTAACCTTATACCGAACAAACAAGATCGAACTCTCACTATTGTGGATACTGGAATTGGAATGAC  296
            ||||||||.||.||.||.||.||.|.||||||.||.|||||.||.||.|||||||||||.||.|||||||||||
Sbjct  223  GAGCTGCACATCAATCTCATTCCCAGCAAACAGGACCGAACCCTGACCATTGTGGATACCGGGATTGGAATGAC  296

Query  297  CAAGGCTGACTTGATCAATAACCTTGGTACTATCGCCAAGTCTGGGACCAAAGCGTTCATGGAAGCTTTGCAGG  370
            ||||||.||||||||||||||||||||.||.||.||||||||.||.||||||||.||||||||.||||||||||
Sbjct  297  CAAGGCCGACTTGATCAATAACCTTGGCACCATTGCCAAGTCGGGCACCAAAGCCTTCATGGAGGCTTTGCAGG  370

Query  371  CTGGTGCAGATATCTCTATGATTGGCCAGTTCGGTGTTGGTTTTTATTCTGCTTATTTGGTTGCTGAGAAAGTA  444
            |||||||||||||||||||||||||||||||.||||||||||||||.|||||.||||||||||||||||||||.
Sbjct  371  CTGGTGCAGATATCTCTATGATTGGCCAGTTTGGTGTTGGTTTTTACTCTGCCTATTTGGTTGCTGAGAAAGTG  444

Query  445  ACTGTGATCACCAAACATAACGATGATGAGCAGTACGCTTGGGAGTCCTCAGCAGGGGGATCATTCACAGTGAG  518
            |||||.|||||.||.||||||||.|||||||||||.||.||||||||||||||.||||||||.|||||||||||
Sbjct  445  ACTGTCATCACGAAGCATAACGACGATGAGCAGTATGCCTGGGAGTCCTCAGCTGGGGGATCCTTCACAGTGAG  518

Query  519  GACAGACACAGGTGAACCTATGGGTCGTGGAACAAAAGTTATCCTACACCTGAAAGAAGACCAAACTGAGTACT  592
            |||.||||||||||||||.|||||||||||||||||.||||||.|.||.|||||||||||||||||.|||||.|
Sbjct  519  GACTGACACAGGTGAACCAATGGGTCGTGGAACAAAGGTTATCTTGCATCTGAAAGAAGACCAAACAGAGTATT  592

Query  593  TGGAGGAACGAAGAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGATATCCCATTACTCTTTTTGTG  666
            ||||||||.|.||||||||||||||.||||||||.|||||||||||.|||||.||||||||||||||.||||||
Sbjct  593  TGGAGGAAAGGAGAATAAAGGAGATCGTGAAGAAGCATTCTCAGTTCATTGGCTATCCCATTACTCTCTTTGTG  666

Query  667  GAGAAGGAACGTGATAAAGAAGTAAGCGATGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAAAA  740
            |||||||||||.|||||.|||||.||.||||||||||||||||||||||||||.|||||.|||||.||||||||
Sbjct  667  GAGAAGGAACGAGATAAGGAAGTCAGTGATGATGAGGCTGAAGAAAAGGAAGAGAAAGAGGAAGAGAAAGAAAA  740

Query  741  AGAAGAGAAAGAGTCGGAAGACAAACCTGAAATTGAAGATGTTGGTTCTGATGAGGAA---GAAGAAAAGAAGG  811
            ||||||.||.|||||.||.||.|||||||||||.|||||||||||.||||||||.|||   ||.||.|||||||
Sbjct  741  AGAAGAAAAGGAGTCTGATGATAAACCTGAAATAGAAGATGTTGGCTCTGATGAAGAAGAGGAGGAGAAGAAGG  814

Query  812  ATGGTGACAAGAAGAAGAAGAAGAAGATTAAGGAAAAGTACATCGATCAAGAAGAGCTCAACAAAACAAAGCCC  885
            ||||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||.
Sbjct  815  ATGGTGACAAGAAGAAAAAGAAGAAGATAAAGGAAAAGTACATTGATCAAGAAGAACTCAACAAAACAAAGCCG  888

Query  886  ATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTACGGAGAATTCTATAAGAGCTTGACCAATGACTG  959
            ||.|||||.||||||||.||.||.||.|||||||||||.||.|||||.|||||.||||||||.||.||.||.||
Sbjct  889  ATTTGGACGAGAAATCCTGATGACATCACTAATGAGGAATATGGAGAGTTCTACAAGAGCTTAACTAACGATTG  962

Query  960  GGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTCTATTTGTCCCAC  1033
            ||||||.|||||||||||.|||||||||||.|||||||||||.||.||||||.|.||||||||.|||||||||.
Sbjct  963  GGAAGAACACTTGGCAGTAAAGCATTTTTCTGTTGAAGGACAATTAGAATTCCGGGCCCTTCTTTTTGTCCCAA  1036

Query 1034  GACGTGCTCCTTTTGATCTGTTTGAAAACAGAAAGAAAAAGAACAATATCAAATTGTATGTACGCAGAGTTTTC  1107
            ||||.|||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||.
Sbjct 1037  GACGCGCTCCTTTTGATCTGTTTGAAAACAGAAAGAAAAAGAACAACATCAAGTTGTATGTTCGCAGAGTTTTT  1110

Query 1108  ATCATGGATAACTGTGAGGAGCTAATCCCTGAATATCTGAACTTCATTAGAGGGGTGGTAGACTCGGAGGATCT  1181
            ||||||||||||||||||||..||||||||||.||||||||.||||||||||||||.||.||.||.||||||||
Sbjct 1111  ATCATGGATAACTGTGAGGAATTAATCCCTGAGTATCTGAATTTCATTAGAGGGGTAGTGGATTCTGAGGATCT  1184

Query 1182  CCCTCTAAACATATCCCGTGAGATGTTGCAACAAAGCAAAATTTTGAAAGTTATCAGGAAGAATTTGGTCAAAA  1255
            |||||||||.||.||||||||.|||.||||||||||.||||||.|||||||||||||.||||||||||||||.|
Sbjct 1185  CCCTCTAAATATTTCCCGTGAAATGCTGCAACAAAGTAAAATTCTGAAAGTTATCAGAAAGAATTTGGTCAAGA  1258

Query 1256  AATGCTTAGAACTCTTTACTGAACTGGCGGAAGATAAAGAGAACTACAAGAAATTCTATGAGCAGTTCTCTAAA  1329
            |||||||||||||.|||||||||||.||.||||||||||||||||||||.||.||.||||||||||||||.|||
Sbjct 1259  AATGCTTAGAACTATTTACTGAACTAGCAGAAGATAAAGAGAACTACAAAAAGTTTTATGAGCAGTTCTCAAAA  1332

Query 1330  AACATAAAGCTTGGAATACACGAAGACTCTCAAAATCGGAAGAAGCTTTCAGAGCTGTTAAGGTACTACACATC  1403
            ||.||||||||||||||.|||||.||||||||.||||||||||||||||||||||||||..|||||||||||||
Sbjct 1333  AATATAAAGCTTGGAATTCACGAGGACTCTCAGAATCGGAAGAAGCTTTCAGAGCTGTTGCGGTACTACACATC  1406

Query 1404  TGCCTCTGGTGATGAGATGGTTTCTCTCAAGGACTACTGCACCAGAATGAAGGAGAACCAGAAACATATCTATT  1477
            |||.|||||.||.||||||||||||||.|||||||||||.||||||||||||||.||||||||.||.|||||||
Sbjct 1407  TGCTTCTGGGGACGAGATGGTTTCTCTGAAGGACTACTGTACCAGAATGAAGGAAAACCAGAAGCACATCTATT  1480

Query 1478  ATATCACAGGTGAGACCAAGGACCAGGTAGCTAACTCATCCTATGCAG-ACAGGGTCTCC-----TATGGGCT-  1544
            .|||||||||||||||||||||||||||.||||||||..|||.||..| ||   ||||||     .|| |||| 
Sbjct 1481  TTATCACAGGTGAGACCAAGGACCAGGTTGCTAACTCCGCCTTTGTGGAAC---GTCTCCGAAAGCAT-GGCTT  1550

Query 1545  -------CTGTAT---ATTCAGCCCATTTTTGAATAGAATAGACATCACCTGACGCTCTACAT------GCA--  1600
                   .|.|||   |||.||||||||..|||.||...|...||.||.||||.|    ..||      |||  
Sbjct 1551  AGAAGTAATTTATATGATTGAGCCCATTGATGAGTATTGTGTGCAACAGCTGAAG----GAATTTGAGGGCAAG  1620

Query 1601  ------GAGTCT----CCA----------GGATCATTCGCCACAGCATCCTCAGAACATCCAGTGGGAAGCCAG  1654
                  |.||||    |||          |||.| |||             |||||.||..||.||.||   ||
Sbjct 1621  ACCTTGGTGTCTGTTACCAAAGAAGGACTGGAAC-TTC-------------CAGAAGATGAAGAGGAAA---AG  1677

Query 1655  AGAGACACAAGCCCTAAGAGTGAACCTACCCAGCCA------GAGA-----TGTCTATCATCATATCACGAAAG  1717
            | |||.|||.|    |||||..||       ||.||      ||||     ||     ||  |.||.|.|||||
Sbjct 1678  A-AGAAACAGG----AAGAGAAAA-------AGACAAAATTTGAGAACCTCTG-----CA--AAATTATGAAAG  1732

Query 1718  ACAT-----ACAAGA-----GACA------CTGTATGC--ACAGACTGCCAGATCGT--CGTCCGAAACATACA  1771
            |.||     |.||||     ||.|      .|||.| |  ||.|||||       ||  |.|||        |.
Sbjct 1733  ATATTTTGGAGAAGAAGGTTGAAAAGGTGGTTGTGT-CAAACCGACTG-------GTGACATCC--------CC  1790

Query 1772  GTCCTTTCACA-TGTACACACAAGCACATA---GTG--------ACAT----ACAATATCCATGCAGG---GAG  1826
            ||.||.|   | |||   ||||||||||||   |||        ||||    |.|||   ||||.|.|   .||
Sbjct 1791  GTGCTGT---ATTGT---CACAAGCACATATGGGTGGACAGCAAACATGGAGAGAAT---CATGAAAGCTCAAG  1855

Query 1827  TCCCAAGAG----GTCGACGCGTATGAAGGGGTTGGATGGCACATCCACAGGCTCTCACACTTATGGATTCAAG  1896
            .||..||||    .||.||       ||.|||||..||||||   .||.||      |.||...|||     ||
Sbjct 1856  CCCTCAGAGACAACTCAAC-------AATGGGTTACATGGCA---GCAAAG------AAACACCTGG-----AG  1908

Query 1897  ATAAACCCCCTAGGAATCACCTTCAT------GACCTTAAGGCAAGAAAAGCCTGCAAATAAGGCAGCCAAGTA  1964
            |||||.||     ..|||| ||.|||      .||||||||||||               |||||||      |
Sbjct 1909  ATAAATCC-----TGATCA-CTCCATTATTGAAACCTTAAGGCAA---------------AAGGCAG------A  1955

Query 1965  GGCGGCCCAG---GAC------GT----GATC----CAGTGTGCCGTGGTTGAGGGGTACTTGACTCCAA----  2017
            |||.|.|.||   |||      ||    ||||    ||...|||  ||..|||    .|||..|||||.|    
Sbjct 1956  GGCTGACAAGAATGACAAATCTGTGAAGGATCTGGTCATCTTGC--TGTATGA----AACTGCACTCCTATCTT  2023

Query 2018  ------ACAGTCTGGAGAAGGGCCACAGTCACGTGGT--CAGCATCCTCTGGCCGGTCCAGGCTTGTTATA---  2080
                  .|||||||  ||||..||.|||.|.|.||.|  |||.|||..|.||..|.| ||.|||||.|.||   
Sbjct 2024  CTGGCTTCAGTCTG--GAAGATCCCCAGACCCATGCTAACAGGATCTACAGGATGAT-CAAGCTTGGTCTAGGT  2094

Query 2081  ------------------AC-----AT--CATCAGCGCCG---------------GGCCT--------------  2100
                              ||     ||  ||.|||.||.|               .||||              
Sbjct 2095  ATTGATGAGGATGATCCTACTGTGGATGACACCAGTGCTGCTGTAACTGAAGAAATGCCTCCCCTGGAAGGAGA  2168

Query 2101  ------CATTTCAAGCAC-------------  2112
                  ||..|||.|||.             
Sbjct 2169  TGACGACACATCACGCATGGAAGAAGTAGAC  2199