Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_06826
- Subject:
- XM_006530204.2
- Aligned Length:
- 2947
- Identities:
- 1360
- Gaps:
- 1358
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTCCTCCCTGGGCAGCAACCTCTCTGAACTTGACCGGCTGTTACTGGAGCTGAACGCAGTGCAGCACAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGCCTGGCTTCCCTGCAGATGAAGCCGAATCGAGCCCCCCCTTGCCTGGAGCCCTGAGCCCCCTTTATGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCCAGAAAATAACACTCCCTTGGGGGGCAAAGCGGGGCCCCTGGTGAAAGAGAAGCCAAAGCGAAATGGAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGGGGCTGGAGGATGTGCGGCCCAGCGTGGAGAGCCTCTTGGATGAACTGGAGAGTTCCGTGCCCAGCCCTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGGCCATCACTGTGAACCAGGGAGAGATGAGCAGTCCGCAGCGAGTCACCTCCAGCCAGCAGCAGACCCGGA 370
Query 1 --------------------------ATGGACGACCTC--GACGCCCTGCTGGCGGACTTGGAGTCTACCAC-- 44
.|||||||.||| |.||.| .|||.|.||.||..||.|||.|||
Sbjct 371 TCTCGGCCTCCTCTGCCACCAGGGAGCTGGACGAGCTCATGGCGTC--ACTGTCAGATTTCAAGACTAGCACTT 442
Query 45 ----------------CTCCCA-----------------CATCTCCA------------AACGGCCT------- 66
|||||| |.|||||| |.|..|||
Sbjct 443 CTGCTGTGCTGCTGAGCTCCCAGGGGCTGCTGCCCGGCTCTTCTCCACCCCCGCCCCTCACCCTCCTTCATCCT 516
Query 67 -GTGTTCTTGTCGGAGGAGACCCCCT-ACTCATACCCAACTGGAAACCACAC------------ATAC-CAGGA 125
.|.|||.| |||.|| ||||.|.|| |||||.||||||| .||| |||.|
Sbjct 517 CCTCTTCCT-----------CCCACTAACTCCTCCC---CTGGAGACCACACCCCAGAGGCCCTCTACACAGAA 576
Query 126 G----------------ATTGCC----GTGCCACCC---------------------CC--------CGTC--- 147
| .||.|| |||.|.||| || ||||
Sbjct 577 GGAAGTAGTCAGGTCCTTTTACCTTCTGTGGCTCCCAGATGGCTTGGTTTGGGTAGTCCTGAGGAGACGTCTGA 650
Query 148 CCCCCA-------------------------------------------------------------------- 153
|.|.||
Sbjct 651 CACTCAAAATTCAAGGTATCCTTCTGTGGCGGCTTCTCAACAGTCACGTGGTGCGAAGAGCCAGGCTCAAGTTA 724
Query 154 --------------------------CCCCCGTCCAGCGAGGCCCTCAATGGCACAATCCTTGACCC------- 194
|||||.||.|| ||..||| |.|||.||||.|||.| ||||
Sbjct 725 GGTGTGGCCTGATGGGTGCTGTGGGTCCCCCCTCTAG-GACTCCC-CCATGCCACACTCCAT-ACCCTGCAAGG 795
Query 195 --CTTA----------GACCAGTGGCAGCCCA-------------------GCGGCTCCCGATT------CATC 231
|.|| |.|||.||||...||| |.||||||| ||| ||.|
Sbjct 796 AGCATAGGGTCCCCGGGGCCACTGGCCAACCATGTGTTTTCAGAGGAGACTGTGGCTCCC-ATTTGGGGACAGC 868
Query 232 CAC---------CAGCA-----GCCT--CAGTCCTCAT-----------CACCTGT---GTACGGCT----CCA 271
||| ||||| |||| .|||||.||| ||.||.| |.|.|||| |||
Sbjct 869 CACAGGCTCTGACAGCATCCAGGCCTGAGAGTCCCCATGGAGTGACTTACAGCTTTCAGGAAGGGCTTGAGCCA 942
Query 272 ------GTGCCA---------------AAACTTCCAG----------TGTCTCCAA--------CCCT-CAGGA 305
|||.|| |..|||||.| |.||.|||| |||| |||||
Sbjct 943 CCCGCCGTGGCATTAGATCGGCAAGATATCCTTCCTGACACCTGGGCTCTCACCAAGGAGTGTGCCCTGCAGGA 1016
Query 306 CAGTGT--------------------TGG---------------------------------CTCTCCGTG--- 323
.||.|| ||| |.|||||||
Sbjct 1017 GAGGGTACAGTCAGAACCAGAGGGCCTGGGAAGCACTTGTCCTGCCGCAGGGGACAAGGAGCCGCTCCGTGGGA 1090
Query 324 ---CTCCCGAG-----------TGGG--------TGAGG-----AGGAGC------------------ACGTCT 352
|||||.|| |||| ||||| .||||| ||..||
Sbjct 1091 AGACTCCCCAGAAGGGAAGCCTTGGGGGACCCACTGAGGCACTCGGGAGCCCAGGGAACCCAGAAGGTACCACT 1164
Query 353 ACAGCTTC-------CCCAACAAGCAGAAATCAG-CTGAGCCTT---------------------CACCCACCG 397
..|||..| .|||..|||.|| ||| |.||||||| ||||||.||
Sbjct 1165 GAAGCCACTCTGGAGGCCAGGAAGGAG----CAGCCGGAGCCTTCTTATGCCATGGCCGTGGGGACACCCAGCG 1234
Query 398 T-----AATGAG------CACGTCCCTGGGCAGCAACCTTTCTGAACTC------------------GACCGCC 442
| | ||| |||.||| ||.||| |.||..||||...|| |.||.|.
Sbjct 1235 TCTCGGA--GAGGATTTCCACCTCC--GGCCAG-ATCCGCTCTGTGATCAGGAGGAGCCGGGAGACGGGCCACG 1303
Query 443 TGC------TG---CTGGAACT-----------GAACGCTGTAC------------AGCA-TAACCC--GCCAG 481
||| || |.|||.|| |.|.||||.|| |||| .||||| .||||
Sbjct 1304 TGCACCCCATGTCCCGGGAGCTTTCCCCTCGCCGCAGGCTGGACCCTGCCAGCCTGAGCAGGAACCCATCCCAG 1377
Query 482 ------------GCTTCCCTGCAGATGAGGCCAAC------TCAAGC------------------------CCC 513
|||...|||||| ||||..| ||.||| |||
Sbjct 1378 GAGCAGCTCATTGCTGAGCTGCAG----GGCCGGCTGGGCATCCAGCTGGCGGCCGAGGAGGTGGCAGGGACCC 1447
Query 514 CCG-------CTTCCT------------------------------------------------GGGGC----- 527
||| ||..|| |||||
Sbjct 1448 CCGAGCAGGACTGGCTGACGGAAGGCGTTGTTATCACCGTGCAGCCACGTGGGAGGCAGGCCGGGGGGCAGTTG 1521
Query 528 ---------------------CCTGAGC---------CCCC------------TCTATGGTGT----------- 548
||||| | |||| |||.||.|||
Sbjct 1522 GTAGAGAAGGTTGTCTACCCTCCTGA-CTCTCCCGTTCCCCTGAGAAGAACCATCTCTGTTGTGGCTCCTTCTC 1594
Query 549 -------------------------CCCAGA------GACTAACAGC--------------------------- 564
|||.|| ||||..||||
Sbjct 1595 CCCCTGCCCCTTTGCTCCAGGATCACCCTGACCCTTCGACTGGCAGCTCTCCTCTCCCACCCAGCCTGCCCACT 1668
Query 565 CCCT--TGGGAGGCAAAG-----------------------------CTGGGCCCCTGACGAAA---GAGAAG- 603
|||| | |||.|.| |||||..||.|||..|| |.||||
Sbjct 1669 CCCTCCT----GGCCAGGGCCCTTGGCTGCTGCTTCTGCTTCATCTTCTGGGGTCCAGACTGAAGGGGGGAAGT 1738
Query 604 CCTAAGCGGAATGGG-GGCCGGGG----CCTG-------------------------GAGGAC-GTGCGGC--- 643
||..||.||| ||| ||.||.|| |||| ||||.| ||| |||
Sbjct 1739 CCCCAGAGGA--GGGTGGGCGTGGCCCTCCTGGTCTCACCTCTGTGCCCCACACCGTGAGGTCTGTG-GGCTGC 1809
Query 644 ----CCAGTGTGGAGAGTCTCTT-----GGATGAA-------CTGGAGAGCTCCGTGCCCAGCCC--------- 692
|||.||.|||....||||| .||||.| ||..|| ||.||.|||||.||||
Sbjct 1810 CAGACCAATGAGGACCCACTCTTCTGCCCGATGCAGGCCGGCCTCCAG-GCACCTTGCCCTGCCCGTGCCCTGT 1882
Query 693 --CGTC--------CCTGCCATCACT------------GTGAACCAGGGC--------GAGA--------TGAG 728
|||| |||.|||.|.|| |.||..|||||| |||| .|||
Sbjct 1883 CTCGTCCCGAGCCACCTCCCAACTCTGAGGATGCTGCAGAGATGCAGGGCCTGGAACAGAGAGTGGATGGAGAG 1956
Query 729 CAGCC---CGCAGCGCGTCACCT--CCACCCAACAGCAGACA-CGCATCTCGGCCTCCTCTGCCACCAGGGAGC 796
|.||| .||||| ||.|| ||.||||.||||||.|| .||| |||.|.|.|| ||
Sbjct 1957 CGGCCGTGGGCAGC----CAGCTGGCCCCCCAGCAGCAGGCAGAGCA--------------GCCCCGAAGG-GC 2011
Query 797 TGGACGAGCTGATGGCTTCGCTGTCGGATTTCAAGTTCATGGCCCAGGGGAAGACAGGGAGCAGCTCACCCCCT 870
.||||||| ||| ..||||||||||||||||||.||.||||||||||||||||||
Sbjct 2012 AGGACGAG-----------------GGA----GGGTTCATGGCCCAGGGGAAAACTGGGAGCAGCTCACCCCCT 2064
Query 871 GGGGGGCCCCCGAAGCCCGGGAGCCAGCTGGACAGCATGCTGGGGAGCCTGCAGTCTGACCTGAACAAGCTGGG 944
|||||.|.|.|.|||||||||||||||||||||||||||.|||||||.||||||||.||||||||||||||.||
Sbjct 2065 GGGGGACTCTCCAAGCCCGGGAGCCAGCTGGACAGCATGTTGGGGAGTCTGCAGTCCGACCTGAACAAGCTAGG 2138
Query 945 GGTCGCCACAGTCGCCAAAGGAGTCTGCGGGGCCTGCAAGAAGCCCATCGCCGGGCAGGTTGTGACCGCCATGG 1018
|||||||||.||.||||||||.|||||.||.|||||||||||||||||||||||||||||.|||||||||||||
Sbjct 2139 GGTCGCCACCGTTGCCAAAGGGGTCTGTGGAGCCTGCAAGAAGCCCATCGCCGGGCAGGTCGTGACCGCCATGG 2212
Query 1019 GGAAGACGTGGCACCCCGAGCACTTCGTCTGCACCCACTGCCAGGAGGAGATCGGATCCCGGAACTTCTTCGAG 1092
|||||||.|||||||||||||||||.||.|||||||||||||||||||||||.||||||||.|||||.||.|||
Sbjct 2213 GGAAGACATGGCACCCCGAGCACTTTGTGTGCACCCACTGCCAGGAGGAGATTGGATCCCGAAACTTTTTTGAG 2286
Query 1093 CGGGATGGACAGCCCTACTGTGAAAAGGACTACCACAACCTCTTCTCCCCGCGCTGCTACTACTGCAACGGCCC 1166
|||||.|||||||||||||||||.|||||||||||||.||||||||||||.||||||||||||||||||||.||
Sbjct 2287 CGGGACGGACAGCCCTACTGTGAGAAGGACTACCACAGCCTCTTCTCCCCACGCTGCTACTACTGCAACGGACC 2360
Query 1167 CATCCTGGATAAAGTGGTGACAGCCCTTGACCGGACGTGGCACCCTGAACACTTCTTCTGTGCACAGTGTGGAG 1240
||||||||||||||||||||||||.||.|||||.||.||||||||.|||||||||||||||||.||||||||||
Sbjct 2361 CATCCTGGATAAAGTGGTGACAGCGCTGGACCGCACATGGCACCCGGAACACTTCTTCTGTGCCCAGTGTGGAG 2434
Query 1241 CCTTCTTTGGTCCCGAAGGGTTCCACGAGAAGGACGGCAAGGCCTACTGTCGCAAGGACTACTTCGACATGTTC 1314
|||||||||||||.|||||.||||||||||||||||||||.||.||||||||.||.||.||||||||||||||.
Sbjct 2435 CCTTCTTTGGTCCAGAAGGCTTCCACGAGAAGGACGGCAAAGCGTACTGTCGTAAAGATTACTTCGACATGTTT 2508
Query 1315 GCACCCAAGTGTGGCGGCTGCGCCCGGGCCATCCTGGAGAACTATATCTCAGCCCTCAACACGCTGTGGCATCC 1388
||.||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.||.|||||.||
Sbjct 2509 GCTCCCAAGTGCGGCGGCTGCGCCCGTGCCATCCTGGAGAACTACATTTCAGCCCTCAACACCCTCTGGCACCC 2582
Query 1389 TGAGTGCTTTGTGTGCCGGGAATGCTTCACGCCATTCGTGAACGGCAGCTTCTTCGAGCACGACGGGCAGCCCT 1462
.||.||||||||||||.||||.||||||||.||.|||||.||||||||||||||.|||||||||||||||||.|
Sbjct 2583 CGAATGCTTTGTGTGCAGGGAGTGCTTCACACCCTTCGTCAACGGCAGCTTCTTTGAGCACGACGGGCAGCCGT 2656
Query 1463 ACTGTGAGGTGCACTACCACGAGCGGCGCGGCTCGCTGTGTTCTGGCTGCCAGAAGCCCATCACCGGCCGCTGC 1536
||||||||||.|||||||||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||
Sbjct 2657 ACTGTGAGGTCCACTACCACGAGCGGCGCGGCTCGCTGTGCTCCGGCTGCCAGAAGCCCATCACGGGCCGCTGC 2730
Query 1537 ATCACCGCCATGGCCAAGAAGTTCCACCCCGAGCACTTCGTCTGTGCCTTCTGCCTCAAGCAGCTCAACAAGGG 1610
|||||||||||||||||||||||||||||||||||.|||||.||.|||||.|||||.|||||||||||||||||
Sbjct 2731 ATCACCGCCATGGCCAAGAAGTTCCACCCCGAGCATTTCGTGTGCGCCTTTTGCCTGAAGCAGCTCAACAAGGG 2804
Query 1611 CACCTTCAAGGAGCAGAACGACAAGCCTTACTGTCAGAACTGCTTCCTCAGGCTCTTCTGC 1671
||||||||||||||||||||||||.||.|||||.||||.|||||||.|.|.||||||||||
Sbjct 2805 CACCTTCAAGGAGCAGAACGACAAACCCTACTGCCAGAGCTGCTTCGTGAAGCTCTTCTGC 2865
