Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07247
- Subject:
- NM_001304332.2
- Aligned Length:
- 3621
- Identities:
- 2074
- Gaps:
- 1545
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTGTGAGGTGATGCCCACAATCAATGAGGGGGACCGCCTGGGTCCCCCTCATGGCGCCGATGCTGACGCCAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTCGAGCAGCTGATGGTGAACATGCTGGACGAGCGGGAGAAGTTGCTGGAGTCTCTTCGGGAGAGTCAGGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTTGGCGGCCACACAGAGCCGGCTCCAGGATGCCATACACGAGCGGGACCAGCTCCAGCGCCACCTTAACTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCCTCCCCCAGGAATTTGCCACCTTAACCCGGGAGCTGAGCATGTGTCGGGAGCAGCTTCTAGAGCGGGAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAGATATCAGAACTGAAAGCAGAACGGAATAACACACGGCTGCTTCTGGAACATCTGGAGTGCCTGGTGTCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATGAACGGTCACTGCGGATGACTGTGGTGAAGCGCCAGGCCCAGTCACCTTCGGGGGTCTCCAGTGAGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGGTGCTGAAGGCCCTCAAGTCACTGTTTGAGCACCACAAGGCCCTGGATGAGAAGGTGCGAGAGCGGCTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCAGCGCTGGAGCGAGTCACCACCTTGGAGGAGCAGCTGGCAGGTGCCCACCAGCAGGTGTCTGCCCTGCAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGGGGCAGGGGTGCGGGATGGAGCGGCAGAAGAGGAGGGGACTGTGGAGCTGGGGCCGAAACGCCTGTGGAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGGATACGGGCCGGGTAGAGGAGCTGCAGGAGCTCCTGGAGAAGCAGAACTTTGAGTTGAGCCAGGCCCGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCGACTGGTCACCCTAACAACAACCGTGACTGAACTCGAGGAGGACCTGGGCACGGCCCGCCGGGACCTCATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTCGGAGGAGCTGAGCAGCAAGCATCAGCGGGACCTCCGGGAGGCTCTGGCCCAGAAGGAGGACATGGAAGAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGATTACTACACTGGAGAAGCGCTACCTGGCTGCTCAGCGTGAGGCAACATCCATCCATGACCTCAATGACAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCTGGAGAATGAGCTGGCCAACAAGGAGTCCCTGCACCGCCAGTGTGAGGAGAAGGCCCGACACCTGCAGGAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTGGAGGTGGCAGAGCAGAAGCTGCAGCAGACGATGCGCAAGGCAGAGACGCTGCCAGAGGTGGAGGCTGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTGGCCCAGAGAATTGCAGCCCTCACCAAGGCTGAAGAACGGCATGGCAACATTGAGGAGCACCTGCGGCAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGAGGGACAGCTGGAGGAGAAGAACCAGGAGCTGGCACGGGTGCGCCAGCGGGAAAAGATGAATGAGGACCACA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAAGCGGCTGTCGGACACAGTGGACCGGCTGCTCAGCGAGTCCAACGAGCGTCTGCAGCTCCACCTGAAGGAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CGCATGGCTGCCCTGGAGGAGAAGAACACGTTGATCCAGGAGTTGGAGAGCTCCCAGCGGCAGATTGAGGAGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCACCACCACAAGGGCCGCCTGTCTGAAGAGATTGAGAAGCTGCGCCAAGAGGTGGACCAGCTGAAGGGCCGAG 1480
Query 1 --------------------------------------ATGGGCAGTGCAGCAGACGTGCGGTTCTCCCTGGGC 36
||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGGGGCCGTTTGTGGATGGCGTCCACTCCAGGTCGCACATGGGCAGTGCAGCAGACGTGCGGTTCTCCCTGGGC 1554
Query 37 ACAACCACACACGCACCCCCAGGCGTGCATCGCCGCTACTCGGCATTGAGGGAAGAGTCTGCCAAGGACTGGGA 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACAACCACACACGCACCCCCAGGCGTGCATCGCCGCTACTCGGCATTGAGGGAAGAGTCTGCCAAGGACTGGGA 1628
Query 111 GACTTCTCCACTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTGACAGTGACCCTGAGATCTCCGACG 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GACTTCTCCACTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTGACAGTGACCCTGAGATCTCCGACG 1702
Query 185 TGGATGAGGATGAGCCAGGGGGTCTGGTGGGCTCTGCGGATGTTGTCTCCCCCAGCGGCCACTCAGATGCCCAG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGGATGAGGATGAGCCAGGGGGTCTGGTGGGCTCTGCGGATGTTGTCTCCCCCAGCGGCCACTCAGATGCCCAG 1776
Query 259 ACCCTGGCCATGATGCTGCAGGAGCAGCTGGATGCCATCAATGAGGAAATCAGGATGATTCAGGAAGAGAAGGA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ACCCTGGCCATGATGCTGCAGGAGCAGCTGGATGCCATCAATGAGGAAATCAGGATGATTCAGGAAGAGAAGGA 1850
Query 333 GTCCACGGAGCTCCGCGCGGAGGAGATTGAGACGCGTGTAACCAGTGGCAGCATGGAAGCCCTAAACCTGAAGC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTCCACGGAGCTCCGCGCGGAGGAGATTGAGACGCGTGTAACCAGTGGCAGCATGGAAGCCCTAAACCTGAAGC 1924
Query 407 AGCTGCGCAAGCGTGGTTCCATCCCCACCTCTCTGACGGCCCTGTCCCTGGCCAGCGCGTCCCCACCACTCAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGCTGCGCAAGCGTGGTTCCATCCCCACCTCTCTGACGGCCCTGTCCCTGGCCAGCGCGTCCCCACCACTCAGC 1998
Query 481 GGCCGCTCCACACCTAAGCTCACCTCCCGCAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCCTGCC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GGCCGCTCCACACCTAAGCTCACCTCCCGCAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCCTGCC 2072
Query 555 CAGTGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CAGTGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCA 2146
Query 629 CCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAGAGAAGCTTGGCCACCCAGCCCTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAGAGAAGCTTGGCCACCCAGCCCTG 2220
Query 703 AGCCAGGAAGAAGGCAAGAGTGCCTTGGAGGATCAGGGCAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACTC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGCCAGGAAGAAGGCAAGAGTGCCTTGGAGGATCAGGGCAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACTC 2294
Query 777 CCTGCACAAGGGCGCCAAGCGAAAGGGCATCAAGTCGTCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCA 850
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CCTGCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCGTCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCA 2368
Query 851 GGCTGATCCAGCTGAGTCGGGATGGAGCCACAGGCCATGTTCTGCTAACAGACTCCGAATTCAGTATGCAGGAG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GGCTGATCCAGCTGAGTCGGGATGGAGCCACAGGCCATGTTCTGCTAACAGACTCCGAATTCAGTATGCAGGAG 2442
Query 925 CCTATGGTGCCTGCCAAGCTGGGGACCCAGGCAGAGAAGGACCGGCGGCTAAAGAAGAAACACCAGCTGCTTGA 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CCTATGGTGCCTGCCAAGCTGGGGACCCAGGCAGAGAAGGACCGGCGGCTAAAGAAGAAACACCAGCTGCTTGA 2516
Query 999 AGATGCCAGCAGGAAAGGAATGCCCTTTGCCCAGTGGGATGGTCCTACTGTGGTCTCCTGGTTGGAGCTCTGGG 1072
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AGATGCCCGCAGGAAAGGAATGCCCTTTGCCCAGTGGGATGGTCCTACTGTGGTCTCCTGGTTGGAGCTCTGGG 2590
Query 1073 TGGGGATGCCTGCCTGGTATGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCCGCTCTGTCG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TGGGGATGCCTGCCTGGTATGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCCGCTCTGTCG 2664
Query 1147 GACACAGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACCGGCTCAAGCTCCGCCTGGCCATTCAGGA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GACACAGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACCGGCTCAAGCTCCGCCTGGCCATTCAGGA 2738
Query 1221 GATGGTGTCATTGACCAGCCCCTCTGCCCCACCCACCTCCAGGACTTCTTCTGGGAATGTCTGGGTCACCCATG 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GATGGTGTCATTGACCAGCCCCTCTGCCCCACCCACCTCCAGGACTTCTTCTGGGAATGTCTGGGTCACCCATG 2812
Query 1295 AAGAGATGGAAACTCTGGAAACATCTACTAAAACAGACAGTGAGGAGGGCAGCTGGGCTCAGACCCTGGCCTAT 1368
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2813 AAGAGATGGAAACTCTGGAAACATCTACTAAAACA---------------------------ACCCTGGCCTAT 2859
Query 1369 GGGGACATGAACCATGAGTGGATTGGGAATGAATGGCTACCCAGCCTGGGGCTCCCGCAGTACCGCAGCTACTT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2860 GGGGACATGAACCATGAGTGGATTGGGAATGAATGGCTACCCAGCCTGGGGCTCCCGCAGTACCGCAGCTACTT 2933
Query 1443 CATGGAGTGCCTGGTGGACGCCCGCATGCTGGACCACCTCACCAAGAAGGACCTGCGGGTCCACCTGAAGATGG 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2934 CATGGAGTGCCTGGTGGACGCCCGCATGCTGGACCACCTCACCAAGAAGGACCTGCGGGTCCACCTGAAGATGG 3007
Query 1517 TGGACAGCTTCCATCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGAG 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3008 TGGACAGCTTCCATCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGAG 3081
Query 1591 CTGGAGAAGAGGCGAGAGGAGAGCCAGCATGAGATCAAGGATGTGTTAGTCTGGACCAACGACCAGGTGGTTCA 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3082 CTGGAGAAGAGGCGAGAGGAGAGCCAGCATGAGATCAAGGATGTGTTAGTCTGGACCAACGACCAGGTGGTTCA 3155
Query 1665 TTGGGTCCAGTCTATTGGGCTCCGGGACTACGCAGGAAACCTGCATGAGAGTGGTGTGCATGGAGCCTTGCTGG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3156 TTGGGTCCAGTCTATTGGGCTCCGGGACTACGCAGGAAACCTGCATGAGAGTGGTGTGCATGGAGCCTTGCTGG 3229
Query 1739 CCCTGGACGAGAACTTCGACCACAACACACTGGCCCTGATCCTCCAGATCCCCACACAGAACACCCAGGCACGC 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3230 CCCTGGACGAGAACTTCGACCACAACACACTGGCCCTGATCCTCCAGATCCCCACACAGAACACCCAGGCACGC 3303
Query 1813 CAAGTGATGGAAAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGGGGATGACAA 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3304 CAAGTGATGGAAAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGGGGATGACAA 3377
Query 1887 GGTGTTTCGCCGCGCGCCCTCCTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGCGGCGGCATGCTCA 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3378 GGTGTTTCGCCGCGCGCCCTCCTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGCGGCGGCATGCTCA 3451
Query 1961 GCGCTTCCGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACCCTGGGGACCCTGCAGCCCCCACCGGCCCCG 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3452 GCGCTTCCGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACCCTGGGGACCCTGCAGCCCCCACCGGCCCCG 3525
Query 2035 CCAAAGAAGATCATGCCTGAAGCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGAC 2103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3526 CCAAAGAAGATCATGCCTGAAGCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGAC 3594
