Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07247
- Subject:
- XR_001737497.2
- Aligned Length:
- 4129
- Identities:
- 1950
- Gaps:
- 2177
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTACCTCGGCGCCGGCTCGGCTCTAGGACGTGTCGGGCTGCACGGGTCGGGGGCGGCTCCCTGCTGCTTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTAGCCGCCTGGCCTTCGGCATTTGCAGGCAGACACACTGCCCTCCAGAAACGATGGGTGTCGCTAGATCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGGGACTCTGCCAGCCTCCGGCACTCAGTCTAAGAGAAGGGCCATCTTCCAGCCCTGCTGTCCCTGCCTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CATGGCCACATTCGGCTGCTGTCTGCATGTCTGGGGACACAGGGCACCCAGCCCCAGCCCTGAGAAGTTAAGCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCTTCTGGCTCAGTTCCACAGGGGCACTCCAGACCCCAGGCCCCTTTCAGAGCAAAAGCAACTGATGCTAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGAGAAGCCCCTGCCCACCTGTCCACTCGCCTGGCACTGCCCACTCTGAGACCCATGCACTGGGTTCCCCTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGTGCCAACCCTGTGAGTCCCTCCCTGTCCCCTGACGCTGAGAAGGCCCTGCCAACCCCCACCATGTGTGAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGATGCCCACAATCAATGAGGGGGACCGCCTGGGTCCCCCTCATGGCGCCGATGCTGACGCCAACTTCGAGCAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGATGGTGAACATGCTGGACGAGCGGGAGAAGTTGCTGGAGTCTCTTCGGGAGAGTCAGGAGACCTTGGCGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CACACAGAGCCGGCTCCAGGATGCCATACACGAGCGGGACCAGCTCCAGCGCCACCTTAACTCCGCCCTCCCCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGGAATTTGCCACCTTAACCCGGGAGCTGAGCATGTGTCGGGAGCAGCTTCTAGAGCGGGAGGAAGAGATATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAACTGAAAGCAGAACGGAATAACACACGGCTGCTTCTGGAACATCTGGAGTGCCTGGTGTCCCGCCATGAACG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTCACTGCGGATGACTGTGGTGAAGCGCCAGGCCCAGTCACCTTCGGGGGTCTCCAGTGAGGTGGAGGTGCTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGCCCTCAAGTCACTGTTTGAGCACCACAAGGCCCTGGATGAGAAGGTGCGAGAGCGGCTCCGGGCAGCGCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGCGAGTCACCACCTTGGAGGAGCAGCTGGCAGGTGCCCACCAGCAGGTGTCTGCCCTGCAGCAGGGGGCAGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGTGCGGGATGGAGCGGCAGAAGAGGAGGGGACTGTGGAGCTGGGGCCGAAACGCCTGTGGAAGGAGGATACGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCGGGTAGAGGAGCTGCAGGAGCTCCTGGAGAAGCAGAACTTTGAGTTGAGCCAGGCCCGGGAGCGACTGGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACCCTAACAACAACCGTGACTGAACTCGAGGAGGACCTGGGCACGGCCCGCCGGGACCTCATCAAGTCGGAGGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCTGAGCAGCAAGCATCAGCGGGACCTCCGGGAGGCTCTGGCCCAGAAGGAGGACATGGAAGAGCGGATTACTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CACTGGAGAAGCGCTACCTGGCTGCTCAGCGTGAGGCAACATCCATCCATGACCTCAATGACAAGCTGGAGAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGCTGGCCAACAAGGAGTCCCTGCACCGCCAGTGTGAGGAGAAGGCCCGACACCTGCAGGAGCTGCTGGAGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGCAGAGCAGAAGCTGCAGCAGACGATGCGCAAGGCAGAGACGCTGCCAGAGGTGGAGGCTGAGCTGGCCCAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GAATTGCAGCCCTCACCAAGGCTGAAGAACGGCATGGCAACATTGAGGAGCACCTGCGGCAGCTGGAGGGACAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGGAGGAGAAGAACCAGGAGCTGGCACGGGTGCGCCAGCGGGAAAAGATGAATGAGGACCACAACAAGCGGCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTCGGACACAGTGGACCGGCTGCTCAGCGAGTCCAACGAGCGTCTGCAGCTCCACCTGAAGGAGCGCATGGCTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCTGGAGGAGAAGAACACGTTGATCCAGGAGTTGGAGAGCTCCCAGCGGCAGATTGAGGAGCAGCACCACCAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGGCCGCCTGTCTGAAGAGATTGAGAAGCTGCGCCAAGAGGTGGACCAGCTGAAGGGCCGAGGGGGGCCGTT 1998
Query 1 ----------------------------ATGGGCAGTGCAGCAGACGTGCGGTTCTCCCTGGGCACAACCACAC 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGTGGATGGCGTCCACTCCAGGTCGCACATGGGCAGTGCAGCAGACGTGCGGTTCTCCCTGGGCACAACCACAC 2072
Query 47 ACGCACCCCCAGGCGTGCATCGCCGCTACTCGGCATTGAGGGAAGAGTCTGCCAAGGACTGGGAGACTTCTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ACGCACCCCCAGGCGTGCATCGCCGCTACTCGGCATTGAGGGAAGAGTCTGCCAAGGACTGGGAGACTTCTCCA 2146
Query 121 CTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTGACAGTGACCCTGAGATCTCCGACGTGGATGAGGA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CTGCCTGGGATGCTGGCCCCGGCAGCTGGCCCTGCCTTTGACAGTGACCCTGAGATCTCCGACGTGGATGAGGA 2220
Query 195 TGAGCCAGGGGGTCTGGTGGGCTCTGCGGATGTTGTCTCCCCCAGCGGCCACTCAGATGCCCAGACCCTGGCCA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TGAGCCAGGGGGTCTGGTGGGCTCTGCGGATGTTGTCTCCCCCAGCGGCCACTCAGATGCCCAGACCCTGGCCA 2294
Query 269 TGATGCTGCAGGAGCAGCTGGATGCCATCAATGAGGAAATCAGGATGATTCAGGAAGAGAAGGAGTCCACGGAG 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TGATGCTGCAGGAGCAGCTGGATGCCATCAATGAGGAAATCAGGATGATTCAGGAAGAGAAGGAGTCCACGGAG 2368
Query 343 CTCCGCGCGGAGGAGATTGAGACGCGTGTAACCAGTGGCAGCATGGAAGCCCTAAACCTGAAGCAGCTGCGCAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CTCCGCGCGGAGGAGATTGAGACGCGTGTAACCAGTGGCAGCATGGAAGCCCTAAACCTGAAGCAGCTGCGCAA 2442
Query 417 GCGTGGTTCCATCCCCACCTCTCTGACGGCCCTGTCCCTGGCCAGCGCGTCCCCACCACTCAGCGGCCGCTCCA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GCGTGGTTCCATCCCCACCTCTCTGACGGCCCTGTCCCTGGCCAGCGCGTCCCCACCACTCAGCGGCCGCTCCA 2516
Query 491 CACCTAAGCTCACCTCCCGCAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCCTGCCCAGTGACTTA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CACCTAAGCTCACCTCCCGCAGTGCTGCCCAGGACCTGGACCGAATGGGGGTCATGACCCTGCCCAGTGACTTA 2590
Query 565 AGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATG 638
|||||||||||||||||||||||
Sbjct 2591 AGAAAGCATAGGAGGAAGCTGCT--------------------------------------------------- 2613
Query 639 TGAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAGAGAAGCTTGGCCACCCAGCCCTGAGCCAGGAAG 712
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2614 --------------------------GGACGCTGCGGCTAGAGAAGCTTGGCCACCCAGCCCTGAGCCAGGAAG 2661
Query 713 AAGGCAAGAGTGCCTTGGAGGATCAGGGCAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAAG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2662 AAGGCAAGAGTGCCTTGGAGGATCAGGGCAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAAG 2735
Query 787 GGCGCCAAGCGAAAGGGCATCAAGTCGTCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCA 860
|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 GGCGCCAAGCGCAAGGGCATCAAGTCGTCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCA 2809
Query 861 GCTGAGTCGGGATGGAGCCACAGGCCATGTTCTGCTAACAGACTCCGAATTCAGTATGCAGGAGCCTATGGTGC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 GCTGAGTCGGGATGGAGCCACAGGCCATGTTCTGCTAACAGACTCCGAATTCAGTATGCAGGAGCCTATGGTGC 2883
Query 935 CTGCCAAGCTGGGGACCCAGGCAGAGAAGGACCGGCGGCTAAAGAAGAAACACCAGCTGCTTGAAGATGCCAGC 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2884 CTGCCAAGCTGGGGACCCAGGCAGAGAAGGACCGGCGGCTAAAGAAGAAACACCAGCTGCTTGAAGATGCCCGC 2957
Query 1009 AGGAAAGGAATGCCCTTTGCCCAGTGGGATGGTCCTACTGTGGTCTCCTGGTTGGAGCTCTGGGTGGGGATGCC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2958 AGGAAAGGAATGCCCTTTGCCCAGTGGGATGGTCCTACTGTGGTCTCCTGGTTGGAGCTCTGGGTGGGGATGCC 3031
Query 1083 TGCCTGGTATGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCCGCTCTGTCGGACACAGAGA 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3032 TGCCTGGTATGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCCGCTCTGTCGGACACAGAGA 3105
Query 1157 TCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACCGGCTCAAGCTCCGCCTGGCCATTCAGGAGATGGTGTCA 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3106 TCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACCGGCTCAAGCTCCGCCTGGCCATTCAGGAGATGGTGTCA 3179
Query 1231 TTGACCAGCCCCTCTGCCCCACCCACCTCCAGGACTTCTTCTGGGAATGTCTGGGTCACCCATGAAGAGATGGA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3180 TTGACCAGCCCCTCTGCCCCACCCACCTCCAGGACTTCTTCTGGGAATGTCTGGGTCACCCATGAAGAGATGGA 3253
Query 1305 AACTCTGGAAACATCTACTAAAACAGACAGTGAGGAGGGCAGCTGGGCTCAGACCCTGGCCTATGGGGACATGA 1378
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3254 AACTCTGGAAACATCTACTAAAACA---------------------------ACCCTGGCCTATGGGGACATGA 3300
Query 1379 ACCATGAGTGGATTGGGAATGAATGGCTACCCAGCCTGGGGCTCCCGCAGTACCGCAGCTACTTCATGGAGTGC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3301 ACCATGAGTGGATTGGGAATGAATGGCTACCCAGCCTGGGGCTCCCGCAGTACCGCAGCTACTTCATGGAGTGC 3374
Query 1453 CTGGTGGACGCCCGCATGCTGGACCACCTCACCAAGAAGGACCTGCGGGTCCACCTGAAGATGGTGGACAGCTT 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3375 CTGGTGGACGCCCGCATGCTGGACCACCTCACCAAGAAGGACCTGCGGGTCCACCTGAAGATGGTGGACAGCTT 3448
Query 1527 CCATCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGAGCTGGAGAAGA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3449 CCATCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGAGCTGGAGAAGA 3522
Query 1601 GGCGAGAGGAGAGCCAGCATGAGATCAAGGATGTGTTAGTCTGGACCAACGACCAGGTGGTTCATTGGGTCCAG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3523 GGCGAGAGGAGAGCCAGCATGAGATCAAGGATGTGTTAGTCTGGACCAACGACCAGGTGGTTCATTGGGTCCAG 3596
Query 1675 TCTATTGGGCTCCGGGACTACGCAGGAAACCTGCATGAGAGTGGTGTGCATGGAGCCTTGCTGGCCCTGGACGA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3597 TCTATTGGGCTCCGGGACTACGCAGGAAACCTGCATGAGAGTGGTGTGCATGGAGCCTTGCTGGCCCTGGACGA 3670
Query 1749 GAACTTCGACCACAACACACTGGCCCTGATCCTCCAGATCCCCACACAGAACACCCAGGCACGCCAAGTGATGG 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3671 GAACTTCGACCACAACACACTGGCCCTGATCCTCCAGATCCCCACACAGAACACCCAGGCACGCCAAGTGATGG 3744
Query 1823 AAAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGGGGATGACAAGGTGTTTCGC 1896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3745 AAAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGACGGGGATGACAAGGTGTTTCGC 3818
Query 1897 CGCGCGCCCTCCTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGCGGCGGCATGCTCAGCGCTTCCGC 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3819 CGCGCGCCCTCCTGGAGGAAGCGCTTCCGGCCGCGGGAGCACCACGGTCGCGGCGGCATGCTCAGCGCTTCCGC 3892
Query 1971 GGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACCCTGGGGACCCTGCAGCCCCCACCGGCCCCGCCAAAGAAGA 2044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3893 GGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACCCTGGGGACCCTGCAGCCCCCACCGGCCCCGCCAAAGAAGA 3966
Query 2045 TCATGCCTGAAGCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGAC 2103
||||||||||||
Sbjct 3967 TCATGCCTGAAG----------------------------------------------- 3978
