Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07247
- Subject:
- XR_387192.1
- Aligned Length:
- 4949
- Identities:
- 1898
- Gaps:
- 2861
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAGAGCTGCAAGGACTCTTGGAGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAAAACTATGAGTTGAGCCAGGCCCGTGAGCGGCTGGTCACCCTGAGTGCCACCGTGACTGAGCTGGAGGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGGGCACGGCCCGCCGAGACCTCATCAAGTCAGAGGAGCTGAGCAGCAAGCATCAGCGGGACCTCCGAGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTCTGGCTCAGAAGGAGGACATGGAAGAGAGAATCACCACACTGGAGAAGCGCTACTTGGCTGCTCAGCGAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCCACATCCATCCATGACCTCAATGACAAACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGCACCGCCAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGCTAGAAGTAGCAGAGCAGAAGTTGCAGCAGACCATGCGCAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAGAGACTCTGCCCGAGGTGGAGGCTGAGCTGTCTCAGAGAATCGCAGCCCTCACCAAGGCTGAGGAACGTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGCAACATTGAGGAACATCTGCGGCAGCTGGAAGGGCAGCTGGAAGAGAAGAACCAGGAGCTGGCAAGGGTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCAGCGGGAGAAGATGAATGAAGACCACAACAAGCGGCTGTCAGACACCGTGGACCGGTTGCTTAGTGAGTCC 666
Query 1 -------------------------------------------------------------ATGGGCAGTGCAG 13
.|||||||.||||
Sbjct 667 AACGAACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTGCCCTGGAGGAGAAGGTCACACGTGGGCAGCGCAG 740
Query 14 CAGACGTGCGGTTCTCCCTGGGCACAACCACACACGCACCCCCAGGCGTGCATCGCCGCTACTCGGCATTGAGG 87
||||.|||.|||||||.|||.|.|||.||||||||||.||||||||..|||||||.|||||.|||||..|||||
Sbjct 741 CAGATGTGAGGTTCTCACTGAGTACAGCCACACACGCGCCCCCAGGTCTGCATCGACGCTATTCGGCGCTGAGG 814
Query 88 GAAGAGTCTGCCAAGGACTGGGAGACTTCTCCACTGCCTGGGATGCTGG------CCCCGGCAGCTGGCCCTGC 155
||.||.|||||||||||||||.||.|.||.||||||||.|||.||.||| ||.|| |||||
Sbjct 815 GATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACG---------CCTGC 879
Query 156 CTTTGACAGTGACCCTGAGATCTCCGACGTGGATGAGGATGAGCCAGGGGGTCTGGTGGGCTCT---GCGGATG 226
||||||||||||||||||||||||.||.|||||||||||||||||.|||||..||||||||.|| |..||||
Sbjct 880 CTTTGACAGTGACCCTGAGATCTCTGATGTGGATGAGGATGAGCCTGGGGGCTTGGTGGGCACTCAGGTCGATG 953
Query 227 TTGTCTCCCCCAGCGGCCACTCAGATGCCCAGACCCTGGCCATGATGCTGCAGGAGCAGCTGGATGCCATCAAT 300
|..||||.|||.|.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.
Sbjct 954 TCATCTCACCCGGTGGCCATTCAGATGCCCAGACCCTGGCCATGATGCTACAGGAGCAGCTGGATGCCATCAAC 1027
Query 301 GAGGAAATCAGGATGATTCAGGAAGAGAAGGAGTCCACGGAGCTCCGCGCGGAGGAGATTGAGACGCGTGTAAC 374
.||||.|||||||||||.|||||.||||||||||||||.|||||.||.||.||||||||||||||.|||||.||
Sbjct 1028 CAGGAGATCAGGATGATCCAGGAGGAGAAGGAGTCCACTGAGCTTCGAGCTGAGGAGATTGAGACCCGTGTGAC 1101
Query 375 CAGTGGCAGCATGGAAGCCCTAAACCTGAAGCAGCTGCGCAAGCGTGGTTCCATCCCCACCTCTCTGACGGCCC 448
|||.|||||||||||.|||||.|||||||..|||||||||||||||||.||.|||||||||||||||||.||||
Sbjct 1102 CAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGACCGCCC 1175
Query 449 TGTCCCTGGCCAGCGCGTCCCCACCACTCAGCGGCCGCTCCACACCTAAGCTCACCTCCCGCAGTGCTGCCCAG 522
|.|||||||||||.||.||.|||||.|||||.||||||||||||||.||||||||.|||||.||||||||||||
Sbjct 1176 TTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTGCCCAG 1249
Query 523 GACCTGGACCGAATGGGGGTCATGACCCTGCCCAGTGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGT 596
||.||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GATCTGGACCGAATGGGGGTCATGACCCTGCCCAGCGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGT 1323
Query 597 GTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATGTGAGACTTCTCCTCCTTCCTCACCCAGGACGC 1397
Query 671 TGCGGCTAGAGAAGCTTGGCCACCCAGCCCTGAGCCAGGAAGAAGGCAAGAGTGCCTTGGAGGATCAGGGCAGC 744
|||||||||||||||||||||||||.|.||||||.||.||.||.|||||||||||||||||||.|||||.||||
Sbjct 1398 TGCGGCTAGAGAAGCTTGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGGGTCAGGACAGC 1471
Query 745 AACCCCAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGAAAGGGCATCAAGTCGTCCAT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct 1472 AACCCCAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCATCCAT 1545
Query 819 TGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGATGGAGCCACAGGCCATGTTC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||.||||||||||
Sbjct 1546 TGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGAT---GCCACGGGCCATGTTC 1616
Query 893 TGCTAACAGACTCCGAATTCAGTATGCAGGAGCCTATGGTGCCTGCCAAGCTGGGGACCCAGGCAGAGAAGGAC 966
||||.|||||||||||..|||||.|||||||.||.|||||.|||||.|||.|||||||||||||||||||||||
Sbjct 1617 TGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGAC 1690
Query 967 CGGCGGCTAAAGAAGAAACACCAGCTGCTTGAAGATGCCAGCAGGAAAGGAATGCCCTTTGCCCAGTGGGATGG 1040
|||||.||.||.||||||||||||||||||||||||||..||.|.||||||||||||||||||||.||||||||
Sbjct 1691 CGGCGACTGAAAAAGAAACACCAGCTGCTTGAAGATGCGCGCCGAAAAGGAATGCCCTTTGCCCAATGGGATGG 1764
Query 1041 TCCTACTGTGGTCTCCTGGTTGGAGCTCTGGGTGGGGATGCCTGCCTGGTATGTGGCAGCCTGCCGGGCCAACG 1114
.||.||.||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||||||||.|
Sbjct 1765 CCCCACGGTGGTCTCCTGGCTGGAGCTCTGGGTGGGGATGCCTGCCTGGTATGTGGCGGCCTGCCGGGCCAATG 1838
Query 1115 TCAAGAGTGGTGCCATCATGTCCGCTCTGTCGGACACAGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTG 1188
||||||||||.||||||||||||||..||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1839 TCAAGAGTGGCGCCATCATGTCCGCCTTGTCGGACACGGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTG 1912
Query 1189 CACCGGCTCAAGCTCCGCCTGGCCATTCAGGAGATGGTGTCATTGACCAGCCCCTCTGCCCCACCCACCTCCAG 1262
|||.||||||||||||||||||||||.|||||||||||||||.||||.||||||||.||.|||||.||||||||
Sbjct 1913 CACAGGCTCAAGCTCCGCCTGGCCATCCAGGAGATGGTGTCACTGACGAGCCCCTCAGCTCCACCTACCTCCAG 1986
Query 1263 GACTTCTTCTGGGAATGTCTGGGTCACCCATGAAGAGATGGAAACTCTGGAAACATCTACTAAAACAGACAGTG 1336
|||||||||.||||||||||||||.|||||.|||||||||||||||||||.|||||||||.|||||||||||||
Sbjct 1987 GACTTCTTCAGGGAATGTCTGGGTGACCCACGAAGAGATGGAAACTCTGGCAACATCTACCAAAACAGACAGTG 2060
Query 1337 AGGAGGGCAGCTGGGCTCAGACCCTGGCCTATGGGGACATGAACCATGAGTGGATTGGGAATGAATGGCTACCC 1410
||||||||||||||||.|||||||||||||||||.||||||||.||.|||||||||||.||.||||||||.|||
Sbjct 2061 AGGAGGGCAGCTGGGCCCAGACCCTGGCCTATGGAGACATGAATCACGAGTGGATTGGAAACGAATGGCTGCCC 2134
Query 1411 AGCCTGGGGCTCCCGCAGTACCGCAGCTACTTCATGGAGTGCCTGGTGGACGCCCGCATGCTGGACCACCTCAC 1484
||||||||||||||.||||||||.||.|||||||||||||||||||||||.||||||||||||||.||||||||
Sbjct 2135 AGCCTGGGGCTCCCTCAGTACCGTAGTTACTTCATGGAGTGCCTGGTGGATGCCCGCATGCTGGATCACCTCAC 2208
Query 1485 CAAGAAGGACCTGCGGGTCCACCTGAAGATGGTGGACAGCTTCCATCGAACCAGTCTTCAGTATGGCATCATGT 1558
|||||||||||||||.|||||.||.||||||||||||||.||||||.|||||||||||||||||||||||||||
Sbjct 2209 CAAGAAGGACCTGCGTGTCCATCTCAAGATGGTGGACAGTTTCCATAGAACCAGTCTTCAGTATGGCATCATGT 2282
Query 1559 GTCTGAAGAGGCTGAATTATGACCGGAAGGAGCTGGAGAAGAGGCGAGAGGAGAGCCAGCATGAGATCAAGGAT 1632
|||||||||||||||||||||||||||||||.|||||.||||||||.||.||||||||||||||||||||||||
Sbjct 2283 GTCTGAAGAGGCTGAATTATGACCGGAAGGAACTGGAAAAGAGGCGGGAAGAGAGCCAGCATGAGATCAAGGAT 2356
Query 1633 GTGTTAGTCTGGACCAACGACCAGGTGGTTCATTGGGTCCAGTCTATTGGGCTCCGGGACTACGCAGGAAACCT 1706
|||.|.|||||||||||.||||||||||||||.||||||||||||||.|||||..|||||||.|||||||||||
Sbjct 2357 GTGCTGGTCTGGACCAATGACCAGGTGGTTCACTGGGTCCAGTCTATAGGGCTAAGGGACTATGCAGGAAACCT 2430
Query 1707 GCATGAGAGTGGTGTGCATGGAGCCTTGCTGGCCCTGGACGAGAACTTCGACCACAACACACTGGCCCTGATCC 1780
.||.|||||||||||||||||.|||.|||||||||||||.||.||||||||||||||||||||||||.||.|.|
Sbjct 2431 ACACGAGAGTGGTGTGCATGGCGCCCTGCTGGCCCTGGATGAAAACTTCGACCACAACACACTGGCCTTGGTTC 2504
Query 1781 TCCAGATCCCCACACAGAACACCCAGGCACGCCAAGTGATGGAAAGAGAGTTCAATAACCTGTTGGCCTTGGGC 1854
|.||||||||||||||||.|||||||||.||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 2505 TGCAGATCCCCACACAGAGCACCCAGGCCCGCCAAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTTGGGC 2578
Query 1855 ACAGACCGGAAGCTGGATGACGGGGATGACAAGGTGTTTCGCCGCGCGCCCTCCTGGAGGAAGCGCTTCCGGCC 1928
||||||.||||..||||||||||.||.||.||||||||.|||||.||.||||||||||||||.|||||||||||
Sbjct 2579 ACAGACAGGAAATTGGATGACGGAGAAGAGAAGGTGTTCCGCCGAGCACCCTCCTGGAGGAAACGCTTCCGGCC 2652
Query 1929 GCGGGAGCACCACGGTCGCGGCGGCATGCTCAGCGCTTCCGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCA 2002
.|||||.||||| |.||||.||||||.|..||.|.||.||||||||||||||||||||||||||||||||||
Sbjct 2653 TCGGGATCACCA---TAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCA 2723
Query 2003 CCCTGGGGACCCTGCAGCCCCCACCGGCCCCGCCAAAGAAGATCATGCCTGAA--------------------- 2055
|.|||||..|.||||||||.|||||.||||||||.||||||||||||||.|||
Sbjct 2724 CGCTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAGAAGATCATGCCGGAAGCCGGGACGGCGGGGGCGCAG 2797
Query 2056 -------------------------------------------------------------------------- 2055
Sbjct 2798 AGACTGGAGCCCTCTACGGTCCGGACCTACTCCTGCTGACCCCCCCCACCCTCCCGCCCCGGGTCTGACGGGGG 2871
Query 2056 ----------------GCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGAC---------- 2103
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2872 TGCGCCCCCGGCTCGGGCTCACTCCCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGACTAGCCACGGC 2945
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2946 CCCCAGGGCGGGTGTCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTCCCTTGG 3019
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3020 CTCCCAGTCTCTCCTCTGTGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATCCC 3093
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3094 ACTATCCGAGTCCTACTTCGTTCCCCCTTTGTAAGTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTG 3167
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3168 TCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGCACCTGTGGCCACCTTCCCT 3241
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3242 CTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGGCCCAGGATCCCGGACCAAAGACTGAGATGACCCT 3315
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3316 TCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGACCCCTCCACTCTGGCCGTA 3389
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3390 CCCGATGGTCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCCCAATCTCCAGTG 3463
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3464 TCTGTAGCTCTTGCCTGCAAGTCTTGCTTGTGGGGTGACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGA 3537
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3538 CAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGCCCAAGCTGACACAGAACCCCAAATGTG 3611
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3612 TGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAGAGAG 3685
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3686 ATGGCCTGATGGCCTTTTGTGCTTCCCCCCAGAGGGCAGTGGGGATGCCTCCAGCCCCAGCCCCAAATGGTGCT 3759
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3760 GCTACTGGATCAGATTGTGAACGGTTAACTCTGCCCTGAAGTGGGGGTGCGGGAATGGGGAGGCTTCCCCTTTA 3833
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3834 GTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCCA 3907
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3908 GCCCTCCTTTAGGGTTCTTTTGGGGGTAAGGGGCTAACTGCTCAAGAAAATCTTGATCCCCTCTCTTGTCTCCA 3981
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3982 TTATTTTAATTGCTTTTTCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCT 4055
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4056 TCTGGACCAATTCCTTAACCTTGGGAAAGCTCAGGGCCTAGTATCAGGGTGGGTGATAGAACCCGAAATGGAAG 4129
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4130 AGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGC 4203
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4204 TTTGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTC 4277
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4278 TGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAATGGGCTGATCGAATGAGCTAACATGGG 4351
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4352 CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGA 4425
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4426 GAGAAGCAGCTGAGTAGAACATGAACTAGTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGA 4499
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4500 AGGGCCAGTCCTAAGATGGAAGGAGCCCTACAATCTGACTCCTTCTAGGGACTCTGGGGCTAGCTTTGTGGGAG 4573
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4574 AGTCAGCCCTGCCCCTCCTCTCCCATGTGACCCTGTCATAGTTTGCAGTGTCCTAGGTAGCACTTGGGGAGCCA 4647
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4648 GGTGCATTCAGGGTCAGTAGGGAGGACAAAATAGGGGGCTCTACGTGCAGTGAGGAAAGGCTGCTGTCATGGTG 4721
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4722 TGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCTGCCAGCCTC 4795
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 4796 CTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAGTGCTTTCAGGAGTGAGTGTGTGAGTGAGTGTG 4869
Query 2104 ----------------------------------------------------------------- 2103
Sbjct 4870 TGAGTGTGTGTGGGCGTGAGCGGGTGTGTACGTACCAATAAACATCCTGGTTTTAAGACAATGTA 4934
