Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07353
- Subject:
- NR_136685.2
- Aligned Length:
- 4391
- Identities:
- 1349
- Gaps:
- 2994
Alignment
Query 1 ATGGCGGATTTCGAAGATTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCA 148
||| |||| ||||.|.||..| ||||||.||.
Sbjct 1 ---------------------ACG------TGAC----------GGGCCCGGCTGT--------AGCGGCGGCG 29
Query 149 GCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTGAAGGACTTTCTGAT 222
||| |||| || |||| |||
Sbjct 30 GCC--GCGG--------------CG------------------------------TCTT-AAG----------- 45
Query 223 TTATCCACAATCAAATCATCGGTTTTCAGT-TTGGATGGTGGCTCATCACCTGTAGAACCTGACTTGGCCGTGG 295
|||....|||| ..|||||||| ||| ||..|.|....||||||||
Sbjct 46 -------------------CGGCGCCCAGTGCAGGATGGTG---------CTG--GAGGCGGCGGCGGCCGTGG 89
Query 296 CTGGAATCCAC-TCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCTGTGCTGCT 368
|||...|..| ||||||.|..|..|...|| ||| ||||.||
Sbjct 90 -TGGCGGCAGCGTCGTTGGCGGCAGCGGGAG----------------------------TGG----GTGCGGC- 129
Query 369 TCAAGATACTAAGCCCACATTTGAGATGCAGCAGC--CATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCA 440
.|||||.|| |..|.|||.| |.|..
Sbjct 130 --------------------------GGCAGCGGCGGCGGCGCCCGC----------------------GGGTG 155
Query 441 GT-TAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTA-GTTCAAAGCAGTAT 512
|| ||||| ||.| .|||.| |.|.|||||.| ||||||||||||||
Sbjct 156 GTATAAAA----TGGC------GGATTT--------------------CGAAGAGTTGAGGTTCAAAGCAGTAT 199
Query 513 TCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGG 273
Query 587 ATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGC 347
Query 661 CCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGC 421
Query 735 ACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTAT 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTAT 495
Query 809 CTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATAT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATAT 569
Query 883 CTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTC 643
Query 957 CAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCT 717
Query 1031 TGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTT 791
Query 1105 GATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGC 865
Query 1179 CTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAAT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAAT 939
Query 1253 TCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACA 1013
Query 1327 AAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGT 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGT 1087
Query 1401 AGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCT 1161
Query 1475 TTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGT 1235
Query 1549 GTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCATACGCCAAT 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCATACGCCAAT 1309
Query 1623 ATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCTTGGAACAT 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 ATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCTTGGAACAT 1383
Query 1697 CTTCTGATACTGTGCAACAG------------------------------------------------------ 1716
||||||||||||||||||||
Sbjct 1384 CTTCTGATACTGTGCAACAGTGAATACAAAATAAAACAAATAATTTGTATTTATGGAGTGGAAAACAGCTTATT 1457
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1458 TCAAGGAAAAATATGACTGCCTTATTATTGCTAGTGCCATATTGTCAGGTGCGAATGGTGCTCAAAAGTTGTAT 1531
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1532 CATTAAAATTTGAAAGTGCTAAACATTTACATATTTAATCATGTAGCAGTTATGTTTTGTTAAAAGTTTATGAC 1605
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1606 TCAAATAAGGAAAATGTGTTGTCATCAATGAGAAAAAATCTAATGAGTCAATTTCACAGTGAAGCACTTAAAAT 1679
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1680 TTTTAAATTAAAATTTTATCAGTGTTAATAAAATAATGTTAACACTACCTGCTTTTTAGTTAAAAGTAATTGAG 1753
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1754 CATTTTCAACCATGAAATACTTCGGAGGGCATAAAAATATATCAGTATGACACGCTGCAGTTGAAACTTATGGT 1827
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1828 GAAATAAGAAACAGCATTTTGCTAAACTTACGAAACAAGGCAGTAAAATTTTAATCACTACTGATGAAACTTGA 1901
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1902 TTTTATATAAGAGTTTTAATATTCTGCTTAAAATGTAAAATGCAAGAAGACTTTGATGGTTTCGTTTTTTGTTA 1975
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1976 GAAAGAATAACATCTAAAATACCATATCAAACTTCACTGTTAGTACTTGAGAAAAAAATGGTTTCAGTGAGAGA 2049
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2050 AATATTTACATTAAACAGGTTTTATATAGACAGCACCCTTGTAATGCTTGGTAAACAATCTAGAATTCCAACCA 2123
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2124 ATATTTTAGAAAAATTTCTAGGTATTTTATTATGGTGTTGTATAAGTCACCACATTCAATTTTCCGTGGATGAG 2197
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2198 GTATCAATATACAGATAAGTAAATCTCTTAATTGTTTTCTAAATAAACTTTATATTTACCACACACATGAAATC 2271
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2272 ATCAAAGAGAATTACAGTACATCTGAAGAACTGGAATTGAAATAACAAAAATAGGATCCTCAGTGGGTATTCTC 2345
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2346 TGGTGATAGAGCTTCAATTTTTAATTTCAATTAAAATAAATAGGCTTGATATAATTTTCAAACTGTTTTATATC 2419
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2420 AAGCTTGCGTATTTTAATTGAAATTCTGAAATTGAAATAGTTGAACATTTAGAAAATGAGCATTTTTGAGTGGC 2493
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2494 TTGGCTTCAGTACACAATATTCCAACACCATTGTCAATACTTAGCGTTATAAAAAGGTTTCAGTTACTAACATG 2567
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2568 AACTGAGAGATACAGCAAATATTAAAGATGATTGAACATATGAAACTGAAAAACTATAAAAAGGTAGAAGCTAT 2641
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2642 TGTAAAAATGAAGAAAACTGAAAAACTGAAAAGATAAGAAGTTACTGTAAAAAGAAAACGGTTATACCATTTGA 2715
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2716 AGCAGAACAAAATGTTCCAATAAACTTTTTTTACTTAATAATAGAAATATTGAAAATGCAAAACTCTGAAGGTA 2789
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2790 TTACAAGGGCTAGACAAATTTTGAATTGTTTGGCATAAGAAGGGAGAGGATTTATTGAATATTATTAATATGAA 2863
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2864 GACAAAATCTGCTTATTGAGATATCTCACCTATTATCATTTTAATAGAGAAGTCATTGGAAAAGTTTGTTGTAA 2937
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2938 TTCTCTTTGGTTTAGTATTGGCTCAAACCACTGTGTCATATAGCTAGTGACAGACATATGAAATGAAAAATTAC 3011
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3012 AGCAAGCTGGGTGCGGTGGCTTATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGGATCACTTGAGC 3085
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3086 TCTGGAGTTCAAAACCAACCTAGGCAACATAGCGAGACCCTCTCTCTACAAAAAAAAAATAATAATAATAATTA 3159
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3160 GCTGGGCATAGTGACACACACCTGTAGCTCCTGCTTCTTGCGAAGCTGAGGCCAGAAGGTAAAGGCTACAGTTA 3233
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3234 CCTATGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGCAGACTCAGTGTCTCCCAAAAAAAGGAAAAAAAA 3307
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3308 AAAATCTGTAGCAACAATTTTCAAAAAGGCTTTAGAAATCGTTGGAATGATTTCTTTCAAATGATTGGTGCTAT 3381
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3382 AGCTTGTATCACTTGATAAGCATTTTTGTAATACCCTTATTTGGAGATTATAAGAGAATAAATATACTTAAATT 3455
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3456 TTTTGAGTTATAAATTCATACTGGTTAGTAGATATTTTAAATGTACCCACTGATATTCTCTATTTTGCATAAAA 3529
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3530 GCATAATGTCAGACTTTCTCTGTGTGGTGGTTATATTCGGGGTGTCTCTGAATGCCAGCATAAAAATTCACGGA 3603
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3604 ATTGAATAGAAATTGGCCTGTCTTAATGACCTATGGTTTCTTTTTTAATGTTTTGAAATAATTAAAGAGAGTTT 3677
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3678 AGTCACACAGGGAGGTCTAGGTGAACTGATGTTGAAGTTTATTACTAGACTTTTCAGACCTAAAAATTTTATTT 3751
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3752 ATTGTTATTACTTGAATATGTCAAAAGTATATTACTGGACAACCTTTTACACATTCCTCTTTCTAAAATCGAAT 3825
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3826 TGGACAATTACAGTTCTCTGGTTCAGAAAATTACATTAGCTCAGAACCCAGTAACCCTTGATAACCCTGTTAGC 3899
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3900 GCAGCAATTCCCGAGTGTGTGCTTTGTGCAGAGCGTTGGACTATGTACTGCTCTTGATGTGGGGACAGCGGGGA 3973
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 3974 CAGAGAGCTGTCATTGAAATAGACATCTGTTTAAGAAGCGATACTTAGATGAACCTCTGTATTTCTGAAAAATA 4047
Query 1717 ------------------------- 1716
Sbjct 4048 AATGTGAAATATCTTAAGAGCTTAA 4072
