Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07353
- Subject:
- XR_001753300.1
- Aligned Length:
- 2899
- Identities:
- 1712
- Gaps:
- 1183
Alignment
Query 1 ----------------------------------------------------ATGGCG-GA-----TTTCGAAG 16
||||.| || ||||..||
Sbjct 1 CTTTCAAAGTTTCACAAGTGGCTGTACCATTTTACATCCCTACCAGCAATGTATGGAGTGATCCAGTTTCTCAG 74
Query 17 ------------------------------------ATTTGAG-------GAATATGGTTTCTAGTTTTAGGGT 47
||||.|| ||||||||||||||||||||||||
Sbjct 75 CATCCTCGCCAGCATTTGGTGTTATCAGTGTTTTTCATTTTAGCCATTCTGAATATGGTTTCTAGTTTTAGGGT 148
Query 48 TTCTGAACTACAAGTATTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGG 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTCTGAACTACAAGTATTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGG 222
Query 122 CGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATAT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATAT 296
Query 196 CCACGAACTCTTGAAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATC 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCACGAACTCTTGAAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATC 370
Query 270 ACCTGTAGAACCTGACTTGGCCGTGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCAT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACCTGTAGAACCTGACTTGGCCGTGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCAT 444
Query 344 CCTCTCCTGTTGGTTCTGTGCTGCTTCAAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCTCTCCTGTTGGTTCTGTGCTGCTTCAAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATT 518
Query 418 CCTCCTGTCCATCCTGATGTGCAGTTAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCAC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCTCCTGTCCATCCTGATGTGCAGTTAAAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCAC 592
Query 492 GAGTTTAGTTCAAAGCAGTATTCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGTTTAGTTCAAAGCAGTATTCAGCGATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTA 666
Query 566 GAGAGATATGCATATCCAGGGATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGAGATATGCATATCCAGGGATTTTTTGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTT 740
Query 640 TGCCTGGCAGAGACAAGTTGCCCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCCTGGCAGAGACAAGTTGCCCTCAAGAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCT 814
Query 714 ATTTCCTTTGCCTGGCTATGCACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATTTCCTTTGCCTGGCTATGCACCACCGCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATA 888
Query 788 TTACATCTTTAGTTAGGTTATCTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTACATCTTTAGTTAGGTTATCTTCAGCTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAG 962
Query 862 AATTACTCTATGTCTGTATATCTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AATTACTCTATGTCTGTATATCTTGTACGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGG 1036
Query 936 TATTAGAAACCCTGATCATTCCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TATTAGAAACCCTGATCATTCCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTA 1110
Query 1010 CAACTAGCCTTCGGGTATCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAACTAGCCTTCGGGTATCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACT 1184
Query 1084 TGTACACATCTGCAGTGTTTTGATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTACACATCTGCAGTGTTTTGATGCTGCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCC 1258
Query 1158 TGTGTGTGACAAAAAAGCTGCCTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTGTGTGACAAAAAAGCTGCCTATGAAAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTT 1332
Query 1232 CTGATGTAGATGAGATCAAATTCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTGATGTAGATGAGATCAAATTCCAAGAAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAA 1406
Query 1306 GTATCCAGCCAACCGTGTACAAAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTATCCAGCCAACCGTGTACAAAAATAGAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAG 1480
Query 1380 TGAGGCAAGCAAGAAGAAAGTAGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTC 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGAGGCAAGCAAGAAGAAAGTAGATGTTATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTC 1554
Query 1454 CTGCCAAAAGGAAATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCA 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTGCCAAAAGGAAATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTCATGTATCAGCCA 1628
Query 1528 TCTTCTGTAAGGGTGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCTTCTGTAAGGGTGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGT 1702
Query 1602 ACCATTCCACCATACGCCAATATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACCATTCCACCATACGCCAATATCAAGCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATA 1776
Query 1676 ATGAACTGAAGCTTGGAACATCTTCTGATACTGTGCAACAG--------------------------------- 1716
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATGAACTGAAGCTTGGAACATCTTCTGATACTGTGCAACAGTGAATACAAAATAAAACAAATAATTTGTATTTA 1850
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1851 TGGAGTGGAAAACAGCTTATTTCAAGGAAAAATATGACTGCCTTATTATTGCTAGTGCCATATTGTCAGGTTTG 1924
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1925 GATTTTCTTTCCCTTATTCCAGTTGATCCCCAGTACTGTCCTCCTATGTTTTTGGATAGTCTCACCTCACCCTT 1998
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 1999 AACAGCAAGCAGTACGTCTGTCACCACCACCAGCTCCCATGAAAGCAGTACTCATGTTAGTTCATCCAGCAGCA 2072
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2073 GGAGTGAGACAGGGGTCATAACCAGCAGTGGAAGTAACATTCCTGACATCATCTCATTGGACTAAAGGAGGACT 2146
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2147 CACTTGATTCTGGGAATCATTCATCAGAACTGCTTTTTCTTGGATCTCTAGTCTGTGGAAACGTTCTTTTTTTT 2220
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2221 TTTTTTTTAATAATTTGGTATTTATTGAAAGTCAGATGGATTCTTTTGCTTTCTGAGGGGTGAACACAGAAGAC 2294
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2295 TGCAACAAGAACCAAATGACATGCAAGGATTTTTCTTAATTATGCTGTACTCTCAGCATCAGATACATTCAACC 2368
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2369 ATAACTGTATCTTCCTGAGAGATGGATTTCACTTTCATACGTTAATGGATGGAGTCTACAAATCAGTGAAAAAA 2442
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2443 GTTTTTGTTAAAATAAAGAGCAATAAAATTATGTAAATATTCAAGTAACCTTTTTTCTAATTAAAAAAAAAATT 2516
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2517 GTAATCACTGATTCTAGAATGACAGCAACTTCTGTTTAACCTTACGTGAAGGAAAAAAAATATATGGAAAGAAC 2590
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2591 TTAATGTTTGCTGAATGAGTCCTTTCCATGGAGATTTGCTCTGTTTCATTGAAGTAATGAAGTTTCAGTACGTG 2664
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2665 GCCAAAGCTTGGATTCCACTTTTCGTCCTGCATTTCCACTTTTCTTCGTGATTGCATCAAAGAAAAATGGCATT 2738
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2739 CGTGTTACTTGGTTTTTTTCCTGCTTATCATTTACACTTTGACGTTGTTTGCTAATGAGTGCTGTGTGAAGTTC 2812
Query 1717 -------------------------------------------------------------------------- 1716
Sbjct 2813 TGGGATTTGGCTACTCTTCATTGGTGATTATGTTTAAAAGCACTATGCAGATTCTGCCCTGACATAAAGTGTGT 2886
Query 1717 ------------- 1716
Sbjct 2887 TATTATGTTTTTA 2899
