Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07503
Subject:
NM_001252637.1
Aligned Length:
2102
Identities:
1747
Gaps:
31

Alignment

Query    1  ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTGACAATGCCGT  74
            ||||||.|||||||||||||||||.|||||||||||||.||.|||||.||.|||||||||||.|||||.|||||
Sbjct    1  ATGGACTCTGACATGGACTACGAACGACCCAACGTTGAGACCATCAAGTGCGTGGTCGTGGGCGACAACGCCGT  74

Query   75  GGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTGGCCACCCACG  148
            .||||||||||||.|.|||||||||.||||.|||||||||||.||.||.|||||.|||||||||||||||||.|
Sbjct   75  AGGGAAGACGCGCCTCATCTGTGCCCGGGCCTGCAACACCACCCTGACACAGTACCAGCTGCTGGCCACCCATG  148

Query  149  TGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGATGTTGTTGAT  222
            ||||.||.||||||||.|||||.||||||||.||.||||||||||||.|||||||.||..|||||||.||.|||
Sbjct  149  TGCCCACCGTGTGGGCCATTGATCAGTACCGTGTCTGCCAGGAGGTCCTGGAGCGGTCCAGGGATGTCGTCGAT  222

Query  223  GAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTGCATATGGCAG  296
            ||||||||..|.||.||||||||||||||.||.|||||.|||||.|||||||||||.||.||.|||||||||||
Sbjct  223  GAAGTGAGCATCTCCCTCAGGCTTTGGGACACGTTTGGAGATCACCACAAAGACAGGCGGTTCGCATATGGCAG  296

Query  297  GTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGCATGTGGTATC  370
            |||.|||||||||||||||||.|||...||.||.||.|||||.|||||||||||||||||||.|||||||||||
Sbjct  297  GTCCGATGTTGTGGTCCTCTGCTTTAGCATCGCGAACCCCAACTCCCTAAATCATGTGAAAACCATGTGGTATC  370

Query  371  CAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCGCTATGCCGAC  444
            .|||||||||||||||||||||||||||.|||||..||||.|||||.||||||||.||.||||||||.||||||
Sbjct  371  AAGAAATCAAGCACTTTTGCCCTCGAACGCCCGTCGTCCTGGTTGGCTGCCAGCTAGACCTCCGCTACGCCGAC  444

Query  445  CTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGCCCCCAGAAAA  518
            |||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||.||.|||||||||||||||||
Sbjct  445  CTGGAGGCTGTTAACCGGGCCAGACGCCCCTTAGCAAGGCCCATAAAGAGAGGTGACATTTTGCCCCCAGAAAA  518

Query  519  AGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTTGGTATCAAGG  592
            ||||||.|||||.||.||||||||||||.|.||.|||||.||.||.||||||||||||||||||||.|||||||
Sbjct  519  AGGCCGCGAGGTGGCGAAGGAACTTGGCATCCCGTACTACGAGACCAGCGTGTTTGACCAGTTTGGCATCAAGG  592

Query  593  ATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATCCCACCTAAAG  666
            |.|||||.||||||||.|||||||||||.||.||.||||||.||||||||||.|||||||||||||||.|.||.
Sbjct  593  ACGTGTTCGACAATGCCATCCGAGCAGCCCTCATCTCCCGCCGGCACCTGCAGTTCTGGAAATCCCACTTGAAA  666

Query  667  AAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCAAAATTCCAGA  740
            |||||||||||.|||.|.||||||||.||||||||||||||.|||||.|||||.|||||||||||..|.||.||
Sbjct  667  AAAGTCCAGAAGCCTCTGCTTCAGGCGCCCTTCCTACCTCCGAAAGCTCCTCCCCCGGTCATCAAGGTCCCCGA  740

Query  741  GTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTTCTGTTCATCC  814
            ||||||.||...||||||.|..||.||||||||||||||||||||.||.||.||.|||||.||.||.|||.|.|
Sbjct  741  GTGTCCGTCTGCGGGGACCAGCGATGCTGCCTGTTTACTGGACAACCCCCTGTGCGCCGACGTCCTCTTCGTTC  814

Query  815  TTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTATGATCTGTTT  888
            |.||.|||.||||.|||||||||||.||.||.|||||||||||||||||||||||||||||.||.||.||.|||
Sbjct  815  TCCATGACGAGGAGCACATCTTTGCGCACCGCATTTACCTCGCTACCTCTTCTTCCAAATTCTACGACCTTTTT  888

Query  889  TTAATGGAATGTGAAGAATCCCCAAACGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCAGAGATTTCCA  962
            ||||||||.||||||||||||||.....||.|||.||||||..|||||   |||..||.|.||||.|||||.||
Sbjct  889  TTAATGGAGTGTGAAGAATCCCCTTGTTGGGGTGGAGGAGCTGGTGAG---GAGGTGCCGTGCAGGGATTTTCA  959

Query  963  GGGGCGGATATTGAGTGTCG----ACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAGGCCGA-  1031
            ||||||||....||||.|.|    |.|| |||||||   ||.||||||||||.|..||||..||||||||.|| 
Sbjct  960  GGGGCGGACGCAGAGTCTTGGATCAGCC-GAGGAAG---GGAAGGAGGGCCCCCAGAGGACCCCTCAGGCTGAC  1029

Query 1032  CCAGTGGA-AGTCTTCAAACAAGAGCCTGGTGGA------GGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCT  1098
            |||  ||| .|||||||..|.||..||||...||      ||||.||..|.||||||||..||     ||||| 
Sbjct 1030  CCA--GGAGCGTCTTCAGGCCAGGACCTGCCTGAGAGTTTGGCTTTGCAGATGGAAGCCTCGG-----GTTCC-  1095

Query 1099  GAGACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTC  1172
            |||..|||..|..||.||||.|||||.||||||||..|..|||||||||||||..|||..||||||||||||||
Sbjct 1096  GAGGGACACGCCCTGTCCGGCTGGAGCAAGGGGTTTGTCAGCATGCACAGGGAGGTGCGGGTCAACCCCATTTC  1169

Query 1173  AAAGCGGATGGGGCCCA-TGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTC  1245
            .||||||.| ||||||| ||||.|||||||||.|||||.|.||..|.|||.||||||||||.||||||||||| 
Sbjct 1170  CAAGCGGGT-GGGCCCAGTGACCGTGGTCAGGCTGGACCCATCGATGCAGTCAGGCCCTTTCCGGACCCTGCT-  1241

Query 1246  CAG-TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCC  1318
            .|| ||.||.||..|.||.||.|||||.|||||||||||.|||.||.||||.|||||||||||.||.|||||||
Sbjct 1242  GAGATTCCTCTACTCTGGGCAGCTGGACGAAAAGGAAAAAGATCTGCTGGGGCTGGCTCAGATGGCCGAGGTCC  1315

Query 1319  TCGAGATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACG  1392
            |.||||||||.|||.|||||||||||||.||.||.||||||||||||||.||.||.||||||||||||||.|||
Sbjct 1316  TGGAGATGTTTGATCTGAGGATGATGGTAGAGAATATCATGAACAAGGAGGCTTTTATGAACCAGGAGATCACG  1389

Query 1393  AAAGCCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATT  1466
            ||||||||.|||||..||||||||||||||||.|||||.||||||||||||||.||.|||||.|||||||||||
Sbjct 1390  AAAGCCTTCCACGTCCGGAAAGCCAATCGGATCAAAGAATGTCTCAGCAAGGGCACCTTCTCAGACGTGACATT  1463

Query 1467  TAAATTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGT  1540
            ||..|||||.||.|||||||||||.|||||||||||||||||||||||||||||.||.||||||||.|||||||
Sbjct 1464  TACCTTGGATGACGGAGCCATCAGCGCCCACAAGCCGCTGCTGATCTGTAGCTGCGAATGGATGGCGGCCATGT  1537

Query 1541  TCGGGGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCA  1614
            |||||||.||.|||||||||||.||||||.|||||||..|.|||||.||.|||||||||||.||.|||||.||.
Sbjct 1538  TCGGGGGTTCCTTTGTGGAAAGCGCCAACCGTGAGGTTCACCTCCCAAATATAAACAAGATGTCGATGCAGGCG  1611

Query 1615  GTATTGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGC  1688
            ||.|||||.||.|||||.||||||||||||||.||.||||||||.||||||||.|||||.||||||||||||||
Sbjct 1612  GTGTTGGAATACCTCTACACCAAGCAGTTGTCACCCAACTTGGACCTGGACCCCCTGGAGTTAATTGCCTTGGC  1685

Query 1689  AAACAGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCA  1762
            ||||||||||||||||.|||||||||||||.||.|.|||.||||||||.||.||||||.|.|||||.|||||..
Sbjct 1686  AAACAGATTTTGCCTGACACACTTGGTTGCTCTCGTAGAGCAGCATGCTGTCCAGGAGCTCACCAAGGCCGCTG  1759

Query 1763  CGAGTGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTG  1836
            ..|||||.|||.||||.||.||.|||||.|||||.||||||||..||||.|||||||||||||||.|.|||.|.
Sbjct 1760  TCAGTGGTGTGAGCATCGATGGTGAAGTTCTCTCCTACTTGGAGCTGGCACAGTTTCACAATGCCAATCAGCTA  1833

Query 1837  GCCGCCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATC  1910
            ||.||||||||||||||.|||||||||||||||||||||||.||.||.|||||||||||.||||||||||||||
Sbjct 1834  GCTGCCTGGTGTTTGCATCACATCTGCACCAACTACAACAGCGTCTGTTCCAAGTTCCGCAAGGAAATCAAATC  1907

Query 1911  AAAATCTGCAGACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATC  1984
            .||.||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||.|
Sbjct 1908  CAAGTCAGCAGACAACCAGGAGTACTTTGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAGGAAGACC  1981

Query 1985  ACTACCAGCGTGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGG  2058
            ||||||||||||||||.||||||||||||||.||.||..|.||.||.||.|||||.|..|||||..||||||||
Sbjct 1982  ACTACCAGCGTGTGAAGAGGGAACGAGAGAAAGAGGACCTGGCGCTGAACAAGCACCATTCAAGGAGAAAGTGG  2055

Query 2059  TGCTTCTGGAATTCATCTCCAGCAGTGGCC  2088
            ||.||||||.||||.||.|||||.||.|||
Sbjct 2056  TGTTTCTGGCATTCGTCCCCAGCTGTCGCC  2085

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