Construct: ORF ccsbBroad304_07503

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014567.1_s304c1, BRDN0000409659
Derived from:
ccsbBroadEn_07503
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RHOBTB1 (9886)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07503
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001242359.2 99.9% 100% 915T>C
2 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350902.2 99.9% 100% 915T>C
3 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350903.2 99.9% 100% 915T>C
4 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350904.2 99.9% 100% 915T>C
5 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350905.2 99.9% 100% 915T>C
6 human 9886 RHOBTB1 Rho related BTB domain cont... NM_014836.5 99.9% 100% 915T>C
7 human 9886 RHOBTB1 Rho related BTB domain cont... XM_006718085.1 99.9% 100% 915T>C
8 human 9886 RHOBTB1 Rho related BTB domain cont... XM_011540424.1 99.9% 100% 915T>C
9 human 9886 RHOBTB1 Rho related BTB domain cont... XM_017017000.2 99.9% 100% 915T>C
10 human 9886 RHOBTB1 Rho related BTB domain cont... XM_024448270.1 99.9% 100% 915T>C
11 human 9886 RHOBTB1 Rho related BTB domain cont... XM_024448271.1 99.9% 100% 915T>C
12 human 9886 RHOBTB1 Rho related BTB domain cont... XM_024448272.1 99.9% 100% 915T>C
13 human 9886 RHOBTB1 Rho related BTB domain cont... XM_024448273.1 99.9% 100% 915T>C
14 human 9886 RHOBTB1 Rho related BTB domain cont... XM_011540425.1 89.1% 87% 915T>C;1812_1813ins106;1863_1864ins119
15 human 9886 RHOBTB1 Rho related BTB domain cont... XM_017017002.2 89.1% 87% 915T>C;1812_1813ins106;1863_1864ins119
16 human 9886 RHOBTB1 Rho related BTB domain cont... XM_011540426.1 84.9% 82.6% (many diffs)
17 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350906.2 82.7% 82.7% 0_1ins360;555T>C
18 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350907.2 82.7% 82.7% 0_1ins360;555T>C
19 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350908.2 82.7% 82.7% 0_1ins360;555T>C
20 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350909.2 82.7% 82.7% 0_1ins360;555T>C
21 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350910.2 82.7% 82.7% 0_1ins360;555T>C
22 human 9886 RHOBTB1 Rho related BTB domain cont... NM_001350911.2 82.7% 82.7% 0_1ins360;555T>C
23 human 9886 RHOBTB1 Rho related BTB domain cont... XM_011540428.1 75.8% 75.5% (many diffs)
24 human 9886 RHOBTB1 Rho related BTB domain cont... XR_945895.1 46.6% (many diffs)
25 human 9886 RHOBTB1 Rho related BTB domain cont... XR_945894.2 46.2% (many diffs)
26 human 9886 RHOBTB1 Rho related BTB domain cont... XR_001747268.1 30.6% (many diffs)
27 mouse 69288 Rhobtb1 Rho-related BTB domain cont... NM_001081347.1 83.1% 88.7% (many diffs)
28 mouse 69288 Rhobtb1 Rho-related BTB domain cont... NM_001252636.1 83.1% 88.7% (many diffs)
29 mouse 69288 Rhobtb1 Rho-related BTB domain cont... NM_001252637.1 83.1% 88.7% (many diffs)
30 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514048.3 83.1% 88.7% (many diffs)
31 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514049.3 83.1% 88.7% (many diffs)
32 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514051.3 83.1% 88.7% (many diffs)
33 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_011243553.2 83.1% 88.7% (many diffs)
34 mouse 69288 Rhobtb1 Rho-related BTB domain cont... NM_001252638.1 68.4% 71.9% (many diffs)
35 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514052.3 68.4% 71.9% (many diffs)
36 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514053.3 68.4% 71.9% (many diffs)
37 mouse 69288 Rhobtb1 Rho-related BTB domain cont... XM_006514054.1 68.4% 71.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2154
ORF length:
2088
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cgctgacatg gactacgaaa gacccaacgt tgaaactatc aaatgtgtgg
121tcgtgggtga caatgccgtg gggaagacgc gcttgatctg tgccagggcg tgcaacacca
181cactcacgca gtatcagctg ctggccaccc acgtgccaac agtgtgggcg attgaccagt
241accgcgtgtg ccaggaggtc ttggagcgtt ctcgggatgt tgttgatgaa gtgagtgttt
301ctctcaggct ttgggatact tttggtgatc atcacaaaga cagacgcttt gcatatggca
361ggtctgatgt tgtggtcctc tgtttttcga ttgctaatcc caattcccta aatcatgtga
421aaagcatgtg gtatccagaa atcaagcact tttgccctcg aacacccgtt atccttgttg
481ggtgccagct tgatctccgc tatgccgacc tggaagctgt taatcgagcc aggcgcccgt
541tagcaaggcc cataaagaga ggggatattt tgcccccaga aaaaggccga gaggtagcaa
601aggaacttgg cttaccatac tatgaaacaa gcgtgtttga ccagtttggt atcaaggatg
661tgtttgacaa tgcaatccga gcagcgctga tttcccgcag gcacctgcaa ttctggaaat
721cccacctaaa gaaagtccag aaacctttac ttcaggcacc cttcctacct ccaaaagccc
781ctccaccggt catcaaaatt ccagagtgtc cttccatggg gacaaatgaa gctgcctgtt
841tactggacaa tcctctatgt gccgatgttc tgttcatcct tcaggaccag gaacacatct
901ttgcacatcg aatttacctc gctacctctt cttccaaatt ttatgatctg tttttaatgg
961aatgtgaaga atccccaaac gggagtgaag gagcctgtga gaaagagaag cagagcagag
1021atttccaggg gcggatattg agtgtcgacc cagaggaaga aagggaggag ggcccgccta
1081ggattcctca ggccgaccag tggaagtctt caaacaagag cctggtggag gctctggggc
1141tggaagccga gggtgcagtt cctgagacac agactttgac cggatggagt aaggggttca
1201ttggcatgca cagggaaatg caagtcaacc ccatttcaaa gcggatgggg cccatgactg
1261tggtcaggat ggacgcttca gtccagccag gcccttttcg gaccctgctc cagtttcttt
1321atacgggaca actggatgaa aaggaaaagg atttggtggg cctggctcag atcgcagagg
1381tcctcgagat gttcgatttg aggatgatgg tggaaaacat catgaacaag gaagccttca
1441tgaaccagga gattacgaaa gcctttcacg taaggaaagc caatcggata aaagagtgtc
1501tcagcaaggg aacgttctcg gacgtgacat ttaaattgga cgatggagcc atcagtgccc
1561acaagccgct gctgatctgt agctgtgagt ggatggcagc catgttcggg gggtcatttg
1621tggaaagtgc caacagtgag gtgtatctcc cgaacataaa caagatatca atgcaagcag
1681tattggatta tctctatacc aagcagttgt ctcctaactt ggatctggac ccgctggaat
1741taattgcctt ggcaaacaga ttttgcctgc cacacttggt tgcacttgca gaacagcatg
1801ccgttcagga gttgaccaaa gccgccacga gtggcgtggg cattgacgga gaagtgctct
1861cttacttgga attggctcag tttcacaatg cccaccagtt ggccgcctgg tgtttgcacc
1921acatctgcac caactacaac agtgtatgct ccaagttccg taaggaaatc aaatcaaaat
1981ctgcagacaa ccaggaatac ttcgagcggc accgctggcc ccctgtgtgg tacctgaagg
2041aagaagatca ctaccagcgt gtgaaaaggg aacgagagaa ggaagatatt gcactaaata
2101agcatcgctc aagacgaaag tggtgcttct ggaattcatc tccagcagtg gcctgcccaa
2161ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2221cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)