Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07792
Subject:
NM_001161521.1
Aligned Length:
1793
Identities:
1770
Gaps:
16

Alignment

Query    1  -----ATGG-----AG-ACGCCGCCGCTGCCTCCC---GCATGCACAAAGCAGGGTCATCAGAAGCCTCTCGAT  60
                 ||||     || |||  |||.|.|..||.|   |.||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGTATGGTTGGAAGCACG--GCCCCAGATTCTCTTTGTATGCACAAAGCAGGGTCATCAGAAGCCTCTCGAT  72

Query   61  TCAAAAGATGATAATACCGAAAAACACTGCCCAGTGACAGTGAATCCTTGGCATATGAAGAAAGCTTTCAAAGT  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   73  TCAAAAGATGATAATACCGAAAAACACTGCCCAGTGACAGTGAATCCTTGGCATATGAAGAAAGCTTTCAAAGT  146

Query  135  CATGAACGAATTAAGAAGTCAAAATTTGCTGTGCGATGTCACAATTGTGGCAGAAGACATGGAAATTTCTGCTC  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  CATGAACGAATTAAGAAGTCAAAATTTGCTGTGCGATGTCACAATTGTGGCAGAAGACATGGAAATTTCTGCTC  220

Query  209  ATAGAGTGGTGCTGGCCGCCTGTAGTCCTTATTTTCATGCCATGTTTACAGGTGAGATGAGTGAGAGCCGAGCA  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  ATAGAGTGGTGCTGGCCGCCTGTAGTCCTTATTTTCATGCCATGTTTACAGGTGAGATGAGTGAGAGCCGAGCA  294

Query  283  AAGAGAGTTAGAATAAAAGAGGTAGATGGCTGGACCCTGAGGATGCTAATTGATTATGTTTACACTGCAGAAAT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  AAGAGAGTTAGAATAAAAGAGGTAGATGGCTGGACCCTGAGGATGCTAATTGATTATGTTTACACTGCAGAAAT  368

Query  357  TCAGGTTACAGAAGAAAATGTACAGGTACTTCTCCCAGCAGCTGGTCTCTTACAGTTACAGGATGTGAAGAAGA  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  TCAGGTTACAGAAGAAAATGTACAGGTACTTCTCCCAGCAGCTGGTCTCTTACAGTTACAGGATGTGAAGAAGA  442

Query  431  CTTGTTGTGAATTTTTGGAATCCCAGCTTCACCCTGTCAACTGCTTAGGAATCCGGGCTTTTGCTGATATGCAT  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  CTTGTTGTGAATTTTTGGAATCCCAGCTTCACCCTGTCAACTGCTTAGGAATCCGGGCTTTTGCTGATATGCAT  516

Query  505  GCATGTACCGACCTTCTGAACAAGGCCAACACCTATGCAGAGCAACATTTTGCAGATGTTGTACTTAGTGAAGA  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  GCATGTACCGACCTTCTGAACAAGGCCAACACCTATGCAGAGCAACATTTTGCAGATGTTGTACTTAGTGAAGA  590

Query  579  ATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAATCTCAAGTGACAAACTTACCATTTCTTCAGAAGAGA  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  ATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAATCTCAAGTGACAAACTTACCATTTCTTCAGAAGAGA  664

Query  653  AGGTATTTGAAGCAGTAATAGCATGGGTGAACCATGACAAGGATGTGAGGCAAGAGTTTATGGCCCGACTGATG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  AGGTATTTGAAGCAGTAATAGCATGGGTGAACCATGACAAGGATGTGAGGCAAGAGTTTATGGCCCGACTGATG  738

Query  727  GAACATGTACGGTTACCTTTGCTTCCTCGGGAATATTTAGTTCAGAGGGTTGAAGAGGAAGCATTGGTCAAGAA  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  GAACATGTACGGTTACCTTTGCTTCCTCGGGAATATTTAGTTCAGAGGGTTGAAGAGGAAGCATTGGTCAAGAA  812

Query  801  TAGCAGTGCTTGCAAAGATTACCTCATTGAAGCAATGAAGTACCATTTGCTGCCAACAGAGCAGCGTATATTAA  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  TAGCAGTGCTTGCAAAGATTACCTCATTGAAGCAATGAAGTACCATTTGCTGCCAACAGAGCAGCGTATATTAA  886

Query  875  TGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGAACCTTCCCAAATTGATGGTGGTGGTTGGGGGCCAAGCA  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  TGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGAACCTTCCCAAATTGATGGTGGTGGTTGGGGGCCAAGCA  960

Query  949  CCAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAAGAAAGGTGGCACCAAGTAGCAGAGTTGCCTTC  1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961  CCAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAAGAAAGGTGGCACCAAGTAGCAGAGTTGCCTTC  1034

Query 1023  CGGGAGGTGCAGGGCAGGCATGGTCTACATGGCTGGACTTGTTTTTGCTGTTGGTGGCTTTAATGGCTCATTAA  1096
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035  CAGGAGGTGCAGGGCAGGCATGGTCTACATGGCTGGACTTGTTTTTGCTGTTGGTGGCTTTAATGGCTCATTAA  1108

Query 1097  GAGTTCGCACTGTAGATTCCTACGACCCTGTGAAGGACCAGTGGACCAGCGTTGCTAACATGAGAGACCGGAGA  1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  GAGTTCGCACTGTAGATTCCTACGACCCTGTGAAGGACCAGTGGACCAGCGTTGCTAACATGAGAGACCGGAGA  1182

Query 1171  AGCACTTTGGGAGCTGCTGTGTTAAATGGATTATTATACGCTGTGGGAGGCTTTGATGGGAGTACAGGTTTGTC  1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183  AGCACTTTGGGAGCTGCTGTGTTAAATGGATTATTATACGCTGTGGGAGGCTTTGATGGGAGTACAGGTTTGTC  1256

Query 1245  ATCTGTGGAAGCATACAACATAAAGTCTAATGAGTGGTTTCATGTAGCTCCCATGAATACAAGGAGGAGCAGTG  1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257  ATCTGTGGAAGCATACAACATAAAGTCTAATGAGTGGTTTCATGTAGCTCCCATGAATACAAGGAGGAGCAGTG  1330

Query 1319  TTGGTGTGGGTGTTGTTGGAGGTTTGCTCTATGCTGTAGGAGGTTATGATGGAGCATCACGTCAGTGTCTTAGC  1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331  TTGGTGTGGGTGTTGTTGGAGGTTTGCTCTATGCTGTAGGAGGTTATGATGGAGCATCACGTCAGTGTCTTAGC  1404

Query 1393  ACAGTAGAATGCTATAATGCTACAACAAATGAGTGGACCTATATAGCAGAAATGAGCACCAGGCGGAGTGGAGC  1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405  ACAGTAGAATGCTATAATGCTACAACAAATGAGTGGACCTATATAGCAGAAATGAGCACCAGGCGGAGTGGAGC  1478

Query 1467  AGGTGTTGGTGTGTTAAACAATTTATTGTATGCTGTAGGAGGTCATGATGGCCCTTTAGTACGAAAAAGTGTTG  1540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  AGGTGTTGGTGTGTTAAACAATTTATTGTATGCTGTAGGAGGTCATGATGGCCCTTTAGTACGAAAAAGTGTTG  1552

Query 1541  AAGTATATGATCCCACCACTAACGCATGGAGACAGGTTGCAGATATGAACATGTGCAGAAGAAATGCAGGAGTT  1614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  AAGTATATGATCCCACCACTAACGCATGGAGACAGGTTGCAGATATGAACATGTGCAGAAGAAATGCAGGAGTT  1626

Query 1615  TGTGCAGTTAATGGTCTGTTATATGTTGTTGGAGGGGATGATGGTTCCTGTAACTTGGCGTCAGTAGAATATTA  1688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  TGTGCAGTTAATGGTCTGTTATATGTTGTTGGAGGGGATGATGGTTCCTGTAACTTGGCGTCAGTAGAATATTA  1700

Query 1689  TAACCCAACAACCGATAAATGGACAGTTGTGTCATCGTGTATGAGCACAGGGAGAAGTTATGCAGGGGTCACAG  1762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701  TAACCCAACAACCGATAAATGGACAGTTGTGTCATCGTGTATGAGCACAGGGAGAAGTTATGCAGGGGTCACAG  1774

Query 1763  TTATTGATAAACCATTA  1779
            |||||||||||||||||
Sbjct 1775  TTATTGATAAACCATTA  1791

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