Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07792
Subject:
XM_011531572.2
Aligned Length:
1899
Identities:
1778
Gaps:
120

Alignment

Query    1  ATGGAGACGCCGCCGCTGCCTCCCGCATGCACAAAGCAGGGTCATCAGAAGCCTCTCGATTCAAAAGATGATAA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAGACGCCGCCGCTGCCTCCCGCATGCACAAAGCAGGGTCATCAGAAGCCTCTCGATTCAAAAGATGATAA  74

Query   75  TACCGAAAAACACTGCCCAGTGACAGTGAATCCTTGGCATATGAAGAAAGCTTTCAAAGTCATGAACGAATTAA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TACCGAAAAACACTGCCCAGTGACAGTGAATCCTTGGCATATGAAGAAAGCTTTCAAAGTCATGAACGAATTAA  148

Query  149  GA------------------------------------------------------------------------  150
            ||                                                                        
Sbjct  149  GAAGACAATCTCACTCTGCCACCCAGGCTGGAATGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCGACTCCT  222

Query  151  ------------------------------------------------AGTCAAAATTTGCTGTGCGATGTCAC  176
                                                            ||||||||||||||||||||||||||
Sbjct  223  GGGTTCAAGCGATTGTCCCACCTCAGCCTCCCGAGTAGCTGGGATTACAGTCAAAATTTGCTGTGCGATGTCAC  296

Query  177  AATTGTGGCAGAAGACATGGAAATTTCTGCTCATAGAGTGGTGCTGGCCGCCTGTAGTCCTTATTTTCATGCCA  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AATTGTGGCAGAAGACATGGAAATTTCTGCTCATAGAGTGGTGCTGGCCGCCTGTAGTCCTTATTTTCATGCCA  370

Query  251  TGTTTACAGGTGAGATGAGTGAGAGCCGAGCAAAGAGAGTTAGAATAAAAGAGGTAGATGGCTGGACCCTGAGG  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGTTTACAGGTGAGATGAGTGAGAGCCGAGCAAAGAGAGTTAGAATAAAAGAGGTAGATGGCTGGACCCTGAGG  444

Query  325  ATGCTAATTGATTATGTTTACACTGCAGAAATTCAGGTTACAGAAGAAAATGTACAGGTACTTCTCCCAGCAGC  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATGCTAATTGATTATGTTTACACTGCAGAAATTCAGGTTACAGAAGAAAATGTACAGGTACTTCTCCCAGCAGC  518

Query  399  TGGTCTCTTACAGTTACAGGATGTGAAGAAGACTTGTTGTGAATTTTTGGAATCCCAGCTTCACCCTGTCAACT  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGGTCTCTTACAGTTACAGGATGTGAAGAAGACTTGTTGTGAATTTTTGGAATCCCAGCTTCACCCTGTCAACT  592

Query  473  GCTTAGGAATCCGGGCTTTTGCTGATATGCATGCATGTACCGACCTTCTGAACAAGGCCAACACCTATGCAGAG  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCTTAGGAATCCGGGCTTTTGCTGATATGCATGCATGTACCGACCTTCTGAACAAGGCCAACACCTATGCAGAG  666

Query  547  CAACATTTTGCAGATGTTGTACTTAGTGAAGAATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAATCTC  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAACATTTTGCAGATGTTGTACTTAGTGAAGAATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAATCTC  740

Query  621  AAGTGACAAACTTACCATTTCTTCAGAAGAGAAGGTATTTGAAGCAGTAATAGCATGGGTGAACCATGACAAGG  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAGTGACAAACTTACCATTTCTTCAGAAGAGAAGGTATTTGAAGCAGTAATAGCATGGGTGAACCATGACAAGG  814

Query  695  ATGTGAGGCAAGAGTTTATGGCCCGACTGATGGAACATGTACGGTTACCTTTGCTTCCTCGGGAATATTTAGTT  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATGTGAGGCAAGAGTTTATGGCCCGACTGATGGAACATGTACGGTTACCTTTGCTTCCTCGGGAATATTTAGTT  888

Query  769  CAGAGGGTTGAAGAGGAAGCATTGGTCAAGAATAGCAGTGCTTGCAAAGATTACCTCATTGAAGCAATGAAGTA  842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGAGGGTTGAAGAGGAAGCATTGGTCAAGAATAGCAGTGCTTGCAAAGATTACCTCATTGAAGCAATGAAGTA  962

Query  843  CCATTTGCTGCCAACAGAGCAGCGTATATTAATGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGAACCTTC  916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCATTTGCTGCCAACAGAGCAGCGTATATTAATGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGAACCTTC  1036

Query  917  CCAAATTGATGGTGGTGGTTGGGGGCCAAGCACCAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAA  990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCAAATTGATGGTGGTGGTTGGGGGCCAAGCACCAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAA  1110

Query  991  GAAAGGTGGCACCAAGTAGCAGAGTTGCCTTCCGGGAGGTGCAGGGCAGGCATGGTCTACATGGCTGGACTTGT  1064
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAAAGGTGGCACCAAGTAGCAGAGTTGCCTTCCAGGAGGTGCAGGGCAGGCATGGTCTACATGGCTGGACTTGT  1184

Query 1065  TTTTGCTGTTGGTGGCTTTAATGGCTCATTAAGAGTTCGCACTGTAGATTCCTACGACCCTGTGAAGGACCAGT  1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTTTGCTGTTGGTGGCTTTAATGGCTCATTAAGAGTTCGCACTGTAGATTCCTACGACCCTGTGAAGGACCAGT  1258

Query 1139  GGACCAGCGTTGCTAACATGAGAGACCGGAGAAGCACTTTGGGAGCTGCTGTGTTAAATGGATTATTATACGCT  1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGACCAGCGTTGCTAACATGAGAGACCGGAGAAGCACTTTGGGAGCTGCTGTGTTAAATGGATTATTATACGCT  1332

Query 1213  GTGGGAGGCTTTGATGGGAGTACAGGTTTGTCATCTGTGGAAGCATACAACATAAAGTCTAATGAGTGGTTTCA  1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GTGGGAGGCTTTGATGGGAGTACAGGTTTGTCATCTGTGGAAGCATACAACATAAAGTCTAATGAGTGGTTTCA  1406

Query 1287  TGTAGCTCCCATGAATACAAGGAGGAGCAGTGTTGGTGTGGGTGTTGTTGGAGGTTTGCTCTATGCTGTAGGAG  1360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGTAGCTCCCATGAATACAAGGAGGAGCAGTGTTGGTGTGGGTGTTGTTGGAGGTTTGCTCTATGCTGTAGGAG  1480

Query 1361  GTTATGATGGAGCATCACGTCAGTGTCTTAGCACAGTAGAATGCTATAATGCTACAACAAATGAGTGGACCTAT  1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTTATGATGGAGCATCACGTCAGTGTCTTAGCACAGTAGAATGCTATAATGCTACAACAAATGAGTGGACCTAT  1554

Query 1435  ATAGCAGAAATGAGCACCAGGCGGAGTGGAGCAGGTGTTGGTGTGTTAAACAATTTATTGTATGCTGTAGGAGG  1508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ATAGCAGAAATGAGCACCAGGCGGAGTGGAGCAGGTGTTGGTGTGTTAAACAATTTATTGTATGCTGTAGGAGG  1628

Query 1509  TCATGATGGCCCTTTAGTACGAAAAAGTGTTGAAGTATATGATCCCACCACTAACGCATGGAGACAGGTTGCAG  1582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCATGATGGCCCTTTAGTACGAAAAAGTGTTGAAGTATATGATCCCACCACTAACGCATGGAGACAGGTTGCAG  1702

Query 1583  ATATGAACATGTGCAGAAGAAATGCAGGAGTTTGTGCAGTTAATGGTCTGTTATATGTTGTTGGAGGGGATGAT  1656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATATGAACATGTGCAGAAGAAATGCAGGAGTTTGTGCAGTTAATGGTCTGTTATATGTTGTTGGAGGGGATGAT  1776

Query 1657  GGTTCCTGTAACTTGGCGTCAGTAGAATATTATAACCCAACAACCGATAAATGGACAGTTGTGTCATCGTGTAT  1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGTTCCTGTAACTTGGCGTCAGTAGAATATTATAACCCAACAACCGATAAATGGACAGTTGTGTCATCGTGTAT  1850

Query 1731  GAGCACAGGGAGAAGTTATGCAGGGGTCACAGTTATTGATAAACCATTA  1779
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GAGCACAGGGAGAAGTTATGCAGGGGTCACAGTTATTGATAAACCATTA  1899

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.