Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_07836
- Subject:
- XR_001742045.2
- Aligned Length:
- 3292
- Identities:
- 2133
- Gaps:
- 1119
Alignment
Query 1 --------------------------------------------------------------------ATGGG- 5
.||||
Sbjct 1 CTTTTGCGTTCAGGGATGGTCGGGAGGTGACCCAGCGCGGGTGGTGCTCTGGGGCAGCGCGGGTGGGCGTGGGC 74
Query 6 --GC--------------TCCCAGC------GCTCGAGTTC--AGCG-ACTGCTGCCTCGATAGTCCGCACTTC 54
|| ||||||| ||..||||.| |||| .|.||.||| ||...|||..||
Sbjct 75 GTGCGCGGCACGCAGGTGTCCCAGCAGTGGGGCCAGAGTGCCGAGCGCGCCGCAGCC-----AGCGGGCAGATC 143
Query 55 CGA--GAGAC----GCTCAAGTCGCAC---GAAGCAGAGCTGGACA--------AGACCAAC-----AAATTCA 106
|.| |.|.| ||||.|| |.|.| |..||||||.||..|| .|.||||| .|||
Sbjct 144 CCATCGTGTCCACAGCTCCAG-CTCCCTTAGGGGCAGAGTTGCTCAGCCTTGAGTGCCCAACCGTGAGAAT--- 213
Query 107 TCAAGGAGCTCATCAAG---------GACGGGAAGTCACTCATAAGCGC--GCTC----------AAGAATTTG 159
||||| | ||.||| |||| .||| ||| |||||
Sbjct 214 ----GGAGC-------GTGCCCTGCCGAGGGG-------------GCGCTGCCTCCCCTTGGGAAAAG-ATTTG 262
Query 160 TCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGATGCAGAAACAGA 336
Query 234 TGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATAC 307
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TGATGAGATGTGTATAGCAAGATCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGATGAACGGATAC 410
Query 308 GGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCC 484
Query 382 AAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTTGTC 558
Query 456 TTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCATTTCTATGAAG 632
Query 530 TATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTG 706
Query 604 GCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGAC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGGGACTTCAAGAC 780
Query 678 ACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGAATCACTGATGA 854
Query 752 AAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACCTCTACGTGCAG 928
Query 826 GAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAACAAATCACCAT 1002
Query 900 GGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATCCTGCACACGGC 1076
Query 974 GGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATG 1150
Query 1048 CAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAA 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTCTACAACTCGAA 1224
Query 1122 CAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAAATGCATCCATG 1195
|||||||||||||||||||||||
Sbjct 1225 CAAAGACAGCCAGAGTGAAGGGA--------------------------------------------------- 1247
Query 1196 CTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTG 1269
||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1248 ---------------GGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACTCCAGAGTGCAGAAGTTG 1306
Query 1270 CTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGAC 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGAC 1380
Query 1344 CATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTT 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTT 1454
Query 1418 TCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCA 1528
Query 1492 GAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTT 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 GAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCACAAGCAGAATTT 1602
Query 1566 GATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCA 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCA 1676
Query 1640 TCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTG 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATATTTAACACCGTG 1750
Query 1714 CCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTG 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 CCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTG 1824
Query 1788 CAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 CAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAACAGCATCATCA 1898
Query 1862 ACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATG 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 ACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTACAGCCCAACATG 1972
Query 1936 AACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCAC---------------------- 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 AACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTGGTTCATGCGAGTTCAGCAAG 2046
Query 1988 ----------------------------------------------------TCCCCCCGAATCCAAGCCCAAC 2009
||||||||||||||||||||||
Sbjct 2047 CAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAGGTAGTATTCCGTCCCCCCGAATCCAAGCCCAAC 2120
Query 2010 TTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCG 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 TTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATCCACGTCCAGCG 2194
Query 2084 ACTCATCCCCCGT------------------------------------------------------------- 2096
|||||||||||||
Sbjct 2195 ACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTTTCTGTTGCTGCCGTTGTTCTCTCATTGGCTCGG 2268
Query 2097 -------------------------------------------------------------------------- 2096
Sbjct 2269 TCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGA 2342
Query 2097 ------------------------------CAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAG 2140
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 CAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAG 2416
Query 2141 CTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATA-------------------------- 2188
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417 CTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAACGCAGAGTGTCCTTCAGCTTCCACA 2490
Query 2189 ---ATGTTCAC--CCA-------------------------TCTCAGGAGCCTGG---------CTGG------ 2217
||.||||| ||| ||||| ||||| ||||
Sbjct 2491 GCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACCTCTCA----CCTGGGCACTTCCACTGGCCGCCT 2560
Query 2218 -----------------------TTG-------------------------------GAGGGGACTCTG---AA 2234
||| |||.|..||.|| ||
Sbjct 2561 GACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCTCTTTACAGAGCAGCGAGAGTGATCTTTGAAAAA 2634
Query 2235 CGGAAA----------------GACTGGCCT--CAT--CCCTGAGAATTACGT----GG-------------AG 2271
|||||| .|.|||||| ||| |.|||||||||||.| || ||
Sbjct 2635 CGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTCTGAGAATTACTTACAAGGCCCTCCAGGGCCCAG 2708
Query 2272 TTCCTC-------------------------------------------------------------------- 2277
|||||.
Sbjct 2709 TTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTACAGCCTCATGCCTTCTTCATGTTCTCAAGCAAGG 2782
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 2783 TCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTCTGTAACTGCTCCCACAT 2856
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 2857 ACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTTGGTTGAGTGAGTGAGAG 2930
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 2931 ACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCAGAGTTCGCTGACACTGGTCTGCTTTTAACCAGC 3004
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 3005 CTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCCAAATTGAACCTGAAAGAAAACACCTCTCAGTGT 3078
Query 2278 -------------------------------------------------------------------------- 2277
Sbjct 3079 TGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCACCCATCTCAGGAGCCTGGCTGGTTGGAGGGGACT 3152
Query 2278 ------------------------------------ 2277
Sbjct 3153 CTGAACGGAAAGACTGGCCTCATCCCTGAGAATTAC 3188