Nucleotide Global Alignment

Description

• Query: ccsbBroad304_07836
• Subject: XR_944312.2
• Aligned Length: 3547
• Identities: 2261
• Gaps: 1274

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGGCCCAGACACCGGCGGGGCGGCCGAGGCTGCTGTGAGAGGGCGCTCGAGGCTGCCGAGAGCTAGCTAGCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGAGGCGGGGAGGCGGCGTCTGCACTCGCTCGCCCGCTCGCTCGCTTCCCGGCGCCGCTGCGGGTCCGCGCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGTTTCCTGCTCGCGATCCGCTCCGTTGCCCGCGCCCGGAACAGCAGCACCTCGGCCGGGTCCGAGCTCGGTTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGAGTCTTGCGCGCCGGCGGACACCGCGCGCGGAGTGAGCCAGCGCCACACCTGTGGAGCCGGCGGCCGTCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGGAGCCGGCCGGGGTCCCGCCGCGTGAGTGCTCTGGGCGGCGGGCGGCCCGGGCCCCGGCGGAGGCGCGCCCC  370

Query    1  ----------------------ATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACT  52
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCGGCTGGGCGCCGCGCGCACCATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACT  444

Query   53  TCCGAGAGACGCTCAAGTCGCACGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGAC  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCGAGAGACGCTCAAGTCGCACGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGAC  518

Query  127  GGGAAGTCACTCATAAGCGCGCTCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGGAAGTCACTCATAAGCGCGCTCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATT  592

Query  201  TAAATTTCAGTGCATAGGAGATGCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  593  TAAATTTCAGTGCATAGGAGATGCAGAAACAGATGATGAGATGTGTATAGCAAGATCTTTGCAGGAGTTTGCCA  666

Query  275  CTGTCCTCAGGAATCTTGAAGATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTG  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTGTCCTCAGGAATCTTGAAGATGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTG  740

Query  349  GAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTA  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTA  814

Query  423  TTGTGGCATCTTAGAAAAACACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCC  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTGTGGCATCTTAGAAAAACACTTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCC  888

Query  497  AAGTGGACCTGGTCCGGCAGCATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAG  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGTGGACCTGGTCCGGCAGCATTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAG  962

Query  571  AGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGAAAGATGTTTGAGTTTGTGGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTA  1036

Query  645  CGAACTGGCCAAGGATTTCGGGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTG  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGAACTGGCCAAGGATTTCGGGGACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTG  1110

Query  719  AAGGCACTAGATCAGAAGTGGAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGT  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AAGGCACTAGATCAGAAGTGGAATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGT  1184

Query  793  CCCTACACCATGGAGGGATACCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTG  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCCTACACCATGGAGGGATACCTCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTG  1258

Query  867  TACATATCAACGGGATTCCAAACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAG  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TACATATCAACGGGATTCCAAACAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAG  1332

Query  941  ATGAATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTG  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATGAATCAGTTATCCTCAAATCCTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTG  1406

Query 1015  GAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGC  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGC  1480

Query 1089  CATGGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCA  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CATGGATGGCCGGGAACCTGTCTACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCA  1554

Query 1163  TTGGCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGA  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TTGGCTTCAGCATAATCAGGAAATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGA  1628

Query 1237  ATTGTGGGGGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGA  1310
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ATTGTGGGTGTCAACTCCAGAGTGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGA  1702

Query 1311  AACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAG  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAG  1776

Query 1385  GACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTC  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTC  1850

Query 1459  TCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTT  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTT  1924

Query 1533  GGCAAATGTTGCTAACAACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTC  1606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GGCAAATGTTGCTAACAACCACAAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTC  1998

Query 1607  TGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTA  1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGCTGAGGCCTCAGGAAGAAACAGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTA  2072

Query 1681  ATAGAAAACCACGAAAAGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCG  1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  ATAGAAAACCACGAAAAGATATTTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCG  2146

Query 1755  GAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAA  1828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GAAGAAGAGCAGTGACTCCAAGCCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAA  2220

Query 1829  CAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATC  1902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CAGAGAAACAGGAACAAAGGAACAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATC  2294

Query 1903  CTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCG  1976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTTAATTCCAGCAGCAGCTTACAGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCG  2368

Query 1977  GCCCAACTCAC---------------------------------------------------------------  1987
            |||||||||||                                                               
Sbjct 2369  GCCCAACTCACTGGTTCATGCGAGTTCAGCAAGCAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAG  2442

Query 1988  -----------TCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCAT  2050
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GTAGTATTCCGTCCCCCCGAATCCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCAT  2516

Query 2051  CCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGT----------------------------  2096
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 2517  CCAGCCCTATGCCCACCTCATCCACGTCCAGCGACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTT  2590

Query 2097  --------------------------------------------------------------------------  2096
                                                                                      
Sbjct 2591  TCTGTTGCTGCCGTTGTTCTCTCATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGT  2664

Query 2097  ---------------------------------------------------------------CAGCACACCGT  2107
                                                                           |||||||||||
Sbjct 2665  TCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGT  2738

Query 2108  TCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTC  2181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  TCCGGAAGGCAAAAGCCTTGTATGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTC  2812

Query 2182  TTCGATA-----------------------------ATGTTCAC--CCA-------------------------  2199
            |||||||                             ||.|||||  |||                         
Sbjct 2813  TTCGATAACGCAGAGTGTCCTTCAGCTTCCACAGCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACC  2886

Query 2200  TCTCAGGAGCCTGG---------CTGG-----------------------------TTG---------------  2220
            |||||    |||||         ||||                             |||               
Sbjct 2887  TCTCA----CCTGGGCACTTCCACTGGCCGCCTGACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCT  2956

Query 2221  ----------------GAGGGGACTCTG---AACGGAAA----------------GACTGGCCT--CAT--CCC  2255
                            |||.|..||.||   ||||||||                .|.||||||  |||  |.|
Sbjct 2957  CTTTACAGAGCAGCGAGAGTGATCTTTGAAAAACGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTC  3030

Query 2256  TGAGAATTACGT----GG-------------AGTTCCTC-----------------------------------  2277
            ||||||||||.|    ||             |||||||.                                   
Sbjct 3031  TGAGAATTACTTACAAGGCCCTCCAGGGCCCAGTTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTAC  3104

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 3105  AGCCTCATGCCTTCTTCATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACC  3178

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 3179  TGTCACCTAACAATTCTGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAG  3252

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 3253  AGCAGGAGGAAAGTTTGGTTGAGTGAGTGAGAGACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCA  3326

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 3327  GAGTTCGCTGACACTGGTCTGCTTTTAACCAGCCTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCC  3400

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 3401  AAATTGAACCTGAAAGAAAACACCTCTCAGTGTTGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCAC  3474

Query 2278  ---------------------------------------------------------------------  2277
                                                                                 
Sbjct 3475  CCATCTCAGGAGCCTGGCTGGTTGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTAC  3543