Nucleotide Global Alignment

Description

Query:
ccsbBroad304_07902
Subject:
XR_387174.3
Aligned Length:
3358
Identities:
2309
Gaps:
693

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACCTGGCCAGAGAGTTATCGCGAGAGCAGCGAAGGCCTGGGGCAGGTTGGGGGCGTTCCCTGGAGCAGTAGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGAGGTCGCTGAGGGGTACGATTTGGCTGTGGTTTTTGAGGGTTGAAGGGAACCCTCCCGACATCTTTCACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCTGGGTCCTGCCTTCGTTCTGAGGAGGTCCCGTTCCCAAGACTGGGCCTGAGCCGGATAGTTCTCAGTGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCTGTAAAAAGGTCGTCTTACCCCACAAAGAAATCATGACCCACAAGTTGAGAACTGCTGACTTAGAAGGACA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTCTCCATCCTTATGATAGTTAATTCTTCAGACCAGGAAGAATAAGATATGTCCATAATTCTTATCTTTCATAT  370

Query    1  ----------------------------------------------------------------------ATGC  4
                                                                                  ||||
Sbjct  371  TTTCAAGATCAAGGTCATTATTTGTATCAAATACTGCTTCAACTTCTCTTGCAGGTAGCCCAGTGTGGATATGC  444

Query    5  TGCTGTTCTTTACTTTGGGATTGCTTATACATTTTGTGTTCTTCGCCTCCATCTTTGACATTTATTTTACATCT  78
            |||||||.|||.||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  445  TGCTGTTTTTTGCTTTGGGATTGCTTATCCATTTTGTGTTCTTCGCTTCCATCTTTGACATTTATTTTACATCT  518

Query   79  CCTTTGGTTCATGGAATGACTCCTCAGTTTACACCATTGCCTCCTCCAGCGAGAAGATTAGTGTTGTTTGTTGC  152
            |||||||||||||||||||||||.|||||||||||.||||||||||||||.|.||||||||||.|.||||||||
Sbjct  519  CCTTTGGTTCATGGAATGACTCCCCAGTTTACACCTTTGCCTCCTCCAGCAAAAAGATTAGTGCTATTTGTTGC  592

Query  153  TGATGGCCTTCGAGCAGATGCACTTTACGAATTAGATGAAAATGGAAACTCTAGAGCACCGTTTATTAGGAATA  226
            |||||||||..||||||||.|.|||||.||||||||||||.||||||||||.||||||||.||.|||||||||.
Sbjct  593  TGATGGCCTGAGAGCAGATACTCTTTATGAATTAGATGAAGATGGAAACTCCAGAGCACCTTTCATTAGGAATG  666

Query  227  TCATAATGCATGAAGGCAGCTGGGGCATATCTCATACACGTGTGCCAACAGAATCTCGGCCAGGTCATGTAGCT  300
            |.|||||||||||||||||||||||..|||||||.||||||||||||||||||||||||||.||.||||||||.
Sbjct  667  TTATAATGCATGAAGGCAGCTGGGGAGTATCTCACACACGTGTGCCAACAGAATCTCGGCCTGGCCATGTAGCC  740

Query  301  CTGATAGCTGGGTTTTATGAAGATGTCAGTGCAGTTGCCAAAGGATGGAAGGAAAATCCTGTAGAGTTTGATTC  374
            .||||||||||.||||||||.|||||||||||||||||||||||||||||.||||||||||||||.|||||.||
Sbjct  741  TTGATAGCTGGATTTTATGAGGATGTCAGTGCAGTTGCCAAAGGATGGAAAGAAAATCCTGTAGAATTTGACTC  814

Query  375  TCTTTTTAATGAAAGTAAATACACATGGAGCTGGGGAAGCCCAGATATCCTGCCTATGTTTGCCAAAGGTGCTA  448
            |||||||||||||||.||.|||||.|||||||||||.||.|||||||||.||||.|||||||||||||||||||
Sbjct  815  TCTTTTTAATGAAAGCAAGTACACGTGGAGCTGGGGGAGTCCAGATATCTTGCCCATGTTTGCCAAAGGTGCTA  888

Query  449  GTGGAGACCACGTTTATACATATAGTTATGATGCTAAAAGAGAGGATTTTGGTGCTCAAGATGCAACAAAACTG  522
            ||||.|||||.||.||||||||||||||.||||||.|||||||.|||||||||||.||.|||||.|||||||||
Sbjct  889  GTGGTGACCATGTCTATACATATAGTTACGATGCTCAAAGAGAAGATTTTGGTGCCCACGATGCCACAAAACTG  962

Query  523  GATACGTGGGTTTTTGATAATGTTAAGGACTTCTTTCATCATGCCAGAAACAACCAGTCTTTGTTTTCTAAAAT  596
            ||||||||||||||||||||.|||||||||||||||.||..|||.|||||||||||.||||||||..|.|||.|
Sbjct  963  GATACGTGGGTTTTTGATAAAGTTAAGGACTTCTTTGATGCTGCAAGAAACAACCAATCTTTGTTCACAAAAGT  1036

Query  597  AAATGAAGAGAAAATAGTTTTTTTCTTACATTTATTAGGAATAGATACAAACGGACATGCTCATCGACCATCCT  670
            |||||||||.|||.||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||.|
Sbjct 1037  AAATGAAGAAAAAGTAGTTTTTTTCTTACATTTATTGGGAATAGATACAAATGGACATGCTCATCGACCATCGT  1110

Query  671  CGAGAGACTACAAGGACAATATTAAAAAAGTTGATGATGGAGTTAAAGAAATCGTGTCTATGTTTAACCATTTC  744
            |.||.||.||.||||||||||||||||||||||||||||||||.||.||||||||.||.||.||.||.|||||.
Sbjct 1111  CAAGGGAATATAAGGACAATATTAAAAAAGTTGATGATGGAGTGAAGGAAATCGTATCAATTTTCAAGCATTTT  1184

Query  745  TATGGAAATGATGGGAAAACAACATTTATCTTTACCTCTGACCATGGAATGACAGACTGGGGTTCCCATGGGGC  818
            ||||||.||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TATGGAGATGATGGGAAAACAGCATTTATCTTTACCTCTGACCATGGAATGACAGACTGGGGTTCCCATGGGGC  1258

Query  819  TGGTCATCCTTCAGAGACTTTAACTCCTTTAGTCACTTGGGGAGCTGGAATCAAGTATCCCCAAAGAGTATCAG  892
            |||||||||.|||||||||||||||||.||.||.||||||||||||||||||||.|.|||.||||..|||||||
Sbjct 1259  TGGTCATCCGTCAGAGACTTTAACTCCGTTCGTTACTTGGGGAGCTGGAATCAAATTTCCTCAAAATGTATCAG  1332

Query  893  CTCAGCAATTTGATGATGCATTTTTGAAAGAGTGGAGATTGGAGAATTGGAAGAGGCTAGATGTCAATCAGGCT  966
            |||||||||.||||||||..|||||.|||||.|||||||||||.||.|||||.|||..||||||||||||||||
Sbjct 1333  CTCAGCAATATGATGATGAGTTTTTAAAAGAATGGAGATTGGAAAACTGGAAAAGGAGAGATGTCAATCAGGCT  1406

Query  967  GATATTGCACCATTGATGACTTCCCTTATTGGAGTTCCCTTTCCTCTTAACTCAGTGGGAATCCTTCCTGTGGA  1040
            |||||||||||..|||||.|.||||||||||||||.||||||||||||||.||.||||||||.||||||||||.
Sbjct 1407  GATATTGCACCTCTGATGGCATCCCTTATTGGAGTCCCCTTTCCTCTTAATTCGGTGGGAATACTTCCTGTGGG  1480

Query 1041  TTATCTTAACAACACTGATCTCTTCAAAGCAGAGAGCATGTTTACAAATGCAGTACAGATTCTTGAACAGTTCA  1114
            |||||||||||||||||.|||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1481  TTATCTTAACAACACTGGTCTCTTCAAAGCAGAGAGCATGTTTACCAATGCAGTACAGATTCTTGAACAGTTCA  1554

Query 1115  AGGTGAAAATGACTCAGAAGAAAGAAGTTACTTTACCATTTTTGTTTACACCATTTAAACTGCTTTCTGATTCC  1188
            |||||||||||||||||||.|||||||..||||||||.||||||||||||||||||||..|||||||||||||.
Sbjct 1555  AGGTGAAAATGACTCAGAAAAAAGAAGCCACTTTACCGTTTTTGTTTACACCATTTAAGTTGCTTTCTGATTCT  1628

Query 1189  AAACAGTTCAACATTTTAAGAAAAGCAAGATCTTATATAAAACACAG-AAAGTTTGATGAAGTGGTCTCCCTTT  1261
            .||||..|..|||||||||||||||||||||||||.|||||||| || |||.|||||||||||.||.|||||.|
Sbjct 1629  CAACAACTGGACATTTTAAGAAAAGCAAGATCTTACATAAAACA-AGAAAAATTTGATGAAGTAGTGTCCCTCT  1701

Query 1262  GCAAGGAGCTAATTCATCTTGCATTGAAAGGATTGTCCTATTATCACACATATGACAGATTCTTTTTGGGCGTC  1335
            |..|||||||.|||.|.||.||..|||.||||||||||||||||||.||.|||||||||.|.|||.|||||.||
Sbjct 1702  GTGAGGAGCTGATTGACCTCGCCCTGAGAGGATTGTCCTATTATCATACTTATGACAGACTGTTTCTGGGCATC  1775

Query 1336  AATGTTGTTATTGGTTTTGTGGGATGGATATCTTATGCCTCTTTGTTGATCATCAAGTCTCATTCCAACCTTAT  1409
            |||||||...|||||||||||||||||||.||||||.|.||||||||.|||||||||||.|||||.||   |||
Sbjct 1776  AATGTTGCAGTTGGTTTTGTGGGATGGATGTCTTATACTTCTTTGTTAATCATCAAGTCGCATTCTAA---TAT  1846

Query 1410  ---AAAAGGTGTTAGTAAAGAAGTGAAGAAACCAAGCCATCTCCTGCCTTGTAGTTTTGTAGCTATTGGCATTT  1480
               ||||||...|||.||.||||..|||||.|||..|..||||||||.||.|||.||..||||||.|||..|.|
Sbjct 1847  CCCAAAAGGCACTAGGAAGGAAGGTAAGAAGCCACACTGTCTCCTGCTTTATAGCTTCATAGCTACTGGTGTCT  1920

Query 1481  TAGTAGCATTTTTTCTGCTGATTCAAGCCTGTCCCTGGACATATTATGTATATGGTTTGTTGCCACTGCCAATA  1554
            |||||||||..||.|||.||||.|||||||||||||||||.||.|||||.||..|.|||.|||||.||||.|||
Sbjct 1921  TAGTAGCATGCTTCCTGATGATCCAAGCCTGTCCCTGGACTTACTATGTGTACTGCTTGCTGCCAGTGCCTATA  1994

Query 1555  TGGTATGCGGTTCTAAGAGAATTTCAAGTTATTCAGGACCTTGTTGTATCAGTGTTGACCTATCCTCTGAGCCA  1628
            ||||||||.||||||||||||..|.||||||||||.|||||.||||.||||.|.|||||.|.|||||.||||||
Sbjct 1995  TGGTATGCAGTTCTAAGAGAACATGAAGTTATTCAAGACCTGGTTGAATCACTATTGACTTTTCCTCGGAGCCA  2068

Query 1629  TTTTGTTGGGTACCTGTTAGCCTTTACCCTGGGAATTGAAGTATTAGTTCTCAGTTTTTTCTACCGCTATATGC  1702
            ||||||||..|||.||.|.|.|||||||.||||.|||||||||.|.||.||||||||.|||||||||||.|||.
Sbjct 2069  TTTTGTTGCCTACTTGCTTGTCTTTACCTTGGGTATTGAAGTACTGGTGCTCAGTTTCTTCTACCGCTACATGT  2142

Query 1703  TTACCGCTGGACTTACTGCCTTTGCAGCTTGGCCATTTCTCACTCGGCTGTGGACTCGAGCAAAGATGACCTCA  1776
            |.||.||.|||||.|.||..|||||||..|||||.||||||||||.|||||||||.|||||||||||.||||..
Sbjct 2143  TGACAGCGGGACTGATTGTGTTTGCAGGCTGGCCGTTTCTCACTCAGCTGTGGACCCGAGCAAAGATCACCTTC  2216

Query 1777  CTGAGTTGGACTTTCTTCTCTTTGCTCCTGGCAGTGTTCCCACTGATGCCGGTTGTAGGTCGAAAGCCAGACAT  1850
            |||||||||.||||||||||||||||.|||||||||||||||||||||||.||.||.|||.||||||||.||.|
Sbjct 2217  CTGAGTTGGGCTTTCTTCTCTTTGCTTCTGGCAGTGTTCCCACTGATGCCTGTCGTGGGTAGAAAGCCAAACCT  2290

Query 1851  CTCTCTAGTGATGGGTGCAGGCTTGCTGGTTCTTCTGTTATCCCTGTGTGTTGTAACATCTCTCATGAAAAGAA  1924
            .||||||||.||||||||.||.||.||||||||||||.|.||.|||..||||||||||.|||||...|||||||
Sbjct 2291  TTCTCTAGTAATGGGTGCTGGATTCCTGGTTCTTCTGCTGTCGCTGGCTGTTGTAACAACTCTCGGAAAAAGAA  2364

Query 1925  AAGATAGCTTTATAAAGGAAGAGCTATTGGTACATCTGTTACAGGTGCTGAGCACAGTGCTCTCCATGTATGTT  1998
            |...||..||..||||||..|||||.|||||||.||||||||||.|||||||.|||||||||||.||||||||.
Sbjct 2365  ACATTAAATTGGTAAAGGGCGAGCTGTTGGTACTTCTGTTACAGATGCTGAGTACAGTGCTCTCTATGTATGTG  2438

Query 1999  GTGTATAGCACTCAGAGTAGTCTACTCAGGAAGCAAGGACTGCCTCTCATGAATCAAATTATTAGCTGGGCAAC  2072
            |||||||||||.||....|||||..|.|.|||..||||.||||||||.||||||||.|||.|.|||||||||||
Sbjct 2439  GTGTATAGCACCCACCACAGTCTGTTAAAGAAAGAAGGCCTGCCTCTTATGAATCAGATTGTGAGCTGGGCAAC  2512

Query 2073  ATTAGCCTCTTCCTTGGTTGTGCCACTACTGAGTTCTCCAGTTCTCTTTCAGCGATTGTTCAGCATACTTCTTT  2146
            ||||||||||||..||||.|..|||||.|||||.||..|||.|||||.|||||||.||..|||||||||.||.|
Sbjct 2513  ATTAGCCTCTTCTCTGGTGGCACCACTCCTGAGCTCCACAGCTCTCTCTCAGCGACTGGCCAGCATACTCCTCT  2586

Query 2147  CATTGATGTCAACCTACCTACTTCTAAGCACAGGGTATGAAGCTCTCTTTCCACTAGTGTTGTCTTGTTTGATG  2220
            |.||||||||.||||||||.||.||||||||.||||||||||||||||||||..|||||.||||.|||||||||
Sbjct 2587  CCTTGATGTCCACCTACCTGCTCCTAAGCACTGGGTATGAAGCTCTCTTTCCTTTAGTGCTGTCCTGTTTGATG  2660

Query 2221  TTTGTCTGGATAAACATAGAACAAGAAACTCTACAACAATCTGGTGTTTGCTGTAAACAAAAGCTCACCAGTAT  2294
            |||||||||||..|..|.||||||||.||.||.|||||..|||||||||..||||||||.|||||||||||.||
Sbjct 2661  TTTGTCTGGATCCAAGTGGAACAAGAGACCCTTCAACAGCCTGGTGTTTCTTGTAAACAGAAGCTCACCAGCAT  2734

Query 2295  CCAGTTCTCTTATAATACTGATATAACTCAGTTTCGACAGCTATATCTGGATGACATCCGTAGGGCCTTTTTCC  2368
            |||||||.|.|.|.|.|||||||||.|||||||.||||||||.|.||.||||||||||||||||||||||||||
Sbjct 2735  CCAGTTCACCTGTGACACTGATATAGCTCAGTTCCGACAGCTCTGTCCGGATGACATCCGTAGGGCCTTTTTCC  2808

Query 2369  TTGTTTTCTTCTTAGTGACAGCATTTTTTGGAACTGGAAATATAGCTTCTATTAACAGCTTTGATCTTGCCTCT  2442
            |.||||||||.|||.|.||.|||||||||||||||||||||||||||||||||||||||||.||.|||||||||
Sbjct 2809  TAGTTTTCTTTTTATTAACTGCATTTTTTGGAACTGGAAATATAGCTTCTATTAACAGCTTCGACCTTGCCTCT  2882

Query 2443  GTCTATTGCTTTCTGACTGTGTTCAGTCCTTTTATGATGGGAGCCCTGATGATGTGGAAGATTTTAATCCCCTT  2516
            ||.||||||||||||||||||||.||||||||.|||||||||||.||.||||||||||||||||||||.||.||
Sbjct 2883  GTGTATTGCTTTCTGACTGTGTTTAGTCCTTTCATGATGGGAGCGCTCATGATGTGGAAGATTTTAATTCCTTT  2956

Query 2517  TGTTCTTGTTATGTGTGCTTTTGAAGCAGTTCAGTTGACTACTCAGTTATCGTCAAAA----------------  2574
            |||||||||.||||||||||||||||||||||||.|.|||||.|||.|.||.||||||                
Sbjct 2957  TGTTCTTGTGATGTGTGCTTTTGAAGCAGTTCAGATAACTACACAGCTGTCCTCAAAAGGCCCACAGGGAACAG  3030

Query 2575  --------------------------------------------------------------------------  2574
                                                                                      
Sbjct 3031  GTTACATTCGTTTAAGAAATGGTGTATGTATTAAGATGATCTGTCCATGAAGTCATTCATCAACTGTTTCAATT  3104

Query 2575  -------------------------------AGCCTTTTTCTCATTGTTCTCGTCATATCAGACATTATGGCTT  2617
                                           ||.||||||||..||||||||.|||||||||||||.|||||||
Sbjct 3105  AACAATGGCTCTGCTTGGAGACACAGACATTAGTCTTTTTCTTGTTGTTCTCATCATATCAGACATCATGGCTT  3178

Query 2618  TGCATTTTTTCTTCTTGGTCAAGGATTATGGCAGCTGGCTTGATATTGGGACAAGCATCAGCCACTATGTGATT  2691
            ||||||||||||||.||||||||||||.|||||||||||||||||||||.||                      
Sbjct 3179  TGCATTTTTTCTTCCTGGTCAAGGATTCTGGCAGCTGGCTTGATATTGGAAC----------------------  3230

Query 2692  GTCATGTCCATGACCATCTTTTTGGTGTTCCTCAATGGCCTGGCCCAGCTGCTCACAACGAAGAAACTCAGACT  2765
                                                                                      
Sbjct 3231  --------------------------------------------------------------------------  3230

Query 2766  ATGTGGCAAACCCAAAAGTCACTTCATG  2793
                                        
Sbjct 3231  ----------------------------  3230

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.