Construct: ORF ccsbBroad304_07902

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003385.1_s304c1, BRDN0000403761
Derived from:
ccsbBroadEn_07902
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIGN (23556)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07902
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23556 PIGN phosphatidylinositol glycan... NM_012327.6 99.9% 99.8% 685C>G;741C>T
2 human 23556 PIGN phosphatidylinositol glycan... NM_176787.5 99.9% 99.8% 685C>G;741C>T
3 human 23556 PIGN phosphatidylinositol glycan... XM_011525896.1 97.8% 97.6% 685C>G;741C>T;2672_2731del
4 human 23556 PIGN phosphatidylinositol glycan... XM_011525898.1 97% 94.3% (many diffs)
5 human 23556 PIGN phosphatidylinositol glycan... XM_011525889.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
6 human 23556 PIGN phosphatidylinositol glycan... XM_011525890.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
7 human 23556 PIGN phosphatidylinositol glycan... XM_011525891.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
8 human 23556 PIGN phosphatidylinositol glycan... XM_011525892.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
9 human 23556 PIGN phosphatidylinositol glycan... XM_011525893.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
10 human 23556 PIGN phosphatidylinositol glycan... XM_011525894.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
11 human 23556 PIGN phosphatidylinositol glycan... XM_011525895.1 95.9% 95.7% 685C>G;741C>T;2672_2788del
12 human 23556 PIGN phosphatidylinositol glycan... XM_017025686.1 85.5% 85.4% 685C>G;741C>T;1171_1172ins402
13 human 23556 PIGN phosphatidylinositol glycan... XM_017025685.1 82% 81.9% (many diffs)
14 mouse 27392 Pign phosphatidylinositol glycan... NM_013784.3 86.4% 87.5% (many diffs)
15 mouse 27392 Pign phosphatidylinositol glycan... XM_017321076.1 86.4% 87.5% (many diffs)
16 mouse 27392 Pign phosphatidylinositol glycan... XM_006529676.3 75.7% 72.9% (many diffs)
17 mouse 27392 Pign phosphatidylinositol glycan... XM_006529677.3 73.7% 73.4% (many diffs)
18 mouse 27392 Pign phosphatidylinositol glycan... XR_387174.3 68.7% (many diffs)
19 mouse 27392 Pign phosphatidylinositol glycan... XM_006529678.3 46% 46.2% (many diffs)
20 mouse 27392 Pign phosphatidylinositol glycan... XR_387175.3 34.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2859
ORF length:
2793
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gctgttcttt actttgggat tgcttataca ttttgtgttc ttcgcctcca
121tctttgacat ttattttaca tctcctttgg ttcatggaat gactcctcag tttacaccat
181tgcctcctcc agcgagaaga ttagtgttgt ttgttgctga tggccttcga gcagatgcac
241tttacgaatt agatgaaaat ggaaactcta gagcaccgtt tattaggaat atcataatgc
301atgaaggcag ctggggcata tctcatacac gtgtgccaac agaatctcgg ccaggtcatg
361tagctctgat agctgggttt tatgaagatg tcagtgcagt tgccaaagga tggaaggaaa
421atcctgtaga gtttgattct ctttttaatg aaagtaaata cacatggagc tggggaagcc
481cagatatcct gcctatgttt gccaaaggtg ctagtggaga ccacgtttat acatatagtt
541atgatgctaa aagagaggat tttggtgctc aagatgcaac aaaactggat acgtgggttt
601ttgataatgt taaggacttc tttcatcatg ccagaaacaa ccagtctttg ttttctaaaa
661taaatgaaga gaaaatagtt tttttcttac atttattagg aatagataca aacggacatg
721ctcatcgacc atcctcgaga gactacaagg acaatattaa aaaagttgat gatggagtta
781aagaaatcgt gtctatgttt aaccatttct atggaaatga tgggaaaaca acatttatct
841ttacctctga ccatggaatg acagactggg gttcccatgg ggctggtcat ccttcagaga
901ctttaactcc tttagtcact tggggagctg gaatcaagta tccccaaaga gtatcagctc
961agcaatttga tgatgcattt ttgaaagagt ggagattgga gaattggaag aggctagatg
1021tcaatcaggc tgatattgca ccattgatga cttcccttat tggagttccc tttcctctta
1081actcagtggg aatccttcct gtggattatc ttaacaacac tgatctcttc aaagcagaga
1141gcatgtttac aaatgcagta cagattcttg aacagttcaa ggtgaaaatg actcagaaga
1201aagaagttac tttaccattt ttgtttacac catttaaact gctttctgat tccaaacagt
1261tcaacatttt aagaaaagca agatcttata taaaacacag aaagtttgat gaagtggtct
1321ccctttgcaa ggagctaatt catcttgcat tgaaaggatt gtcctattat cacacatatg
1381acagattctt tttgggcgtc aatgttgtta ttggttttgt gggatggata tcttatgcct
1441ctttgttgat catcaagtct cattccaacc ttataaaagg tgttagtaaa gaagtgaaga
1501aaccaagcca tctcctgcct tgtagttttg tagctattgg cattttagta gcattttttc
1561tgctgattca agcctgtccc tggacatatt atgtatatgg tttgttgcca ctgccaatat
1621ggtatgcggt tctaagagaa tttcaagtta ttcaggacct tgttgtatca gtgttgacct
1681atcctctgag ccattttgtt gggtacctgt tagcctttac cctgggaatt gaagtattag
1741ttctcagttt tttctaccgc tatatgctta ccgctggact tactgccttt gcagcttggc
1801catttctcac tcggctgtgg actcgagcaa agatgacctc actgagttgg actttcttct
1861ctttgctcct ggcagtgttc ccactgatgc cggttgtagg tcgaaagcca gacatctctc
1921tagtgatggg tgcaggcttg ctggttcttc tgttatccct gtgtgttgta acatctctca
1981tgaaaagaaa agatagcttt ataaaggaag agctattggt acatctgtta caggtgctga
2041gcacagtgct ctccatgtat gttgtgtata gcactcagag tagtctactc aggaagcaag
2101gactgcctct catgaatcaa attattagct gggcaacatt agcctcttcc ttggttgtgc
2161cactactgag ttctccagtt ctctttcagc gattgttcag catacttctt tcattgatgt
2221caacctacct acttctaagc acagggtatg aagctctctt tccactagtg ttgtcttgtt
2281tgatgtttgt ctggataaac atagaacaag aaactctaca acaatctggt gtttgctgta
2341aacaaaagct caccagtatc cagttctctt ataatactga tataactcag tttcgacagc
2401tatatctgga tgacatccgt agggcctttt tccttgtttt cttcttagtg acagcatttt
2461ttggaactgg aaatatagct tctattaaca gctttgatct tgcctctgtc tattgctttc
2521tgactgtgtt cagtcctttt atgatgggag ccctgatgat gtggaagatt ttaatcccct
2581ttgttcttgt tatgtgtgct tttgaagcag ttcagttgac tactcagtta tcgtcaaaaa
2641gcctttttct cattgttctc gtcatatcag acattatggc tttgcatttt ttcttcttgg
2701tcaaggatta tggcagctgg cttgatattg ggacaagcat cagccactat gtgattgtca
2761tgtccatgac catctttttg gtgttcctca atggcctggc ccagctgctc acaacgaaga
2821aactcagact atgtggcaaa cccaaaagtc acttcatgtg cccaactttc ttgtacaaag
2881tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2941gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)