Nucleotide Global Alignment

Description

• Query: ccsbBroad304_08004
• Subject: NR_036464.1
• Aligned Length: 3644
• Identities: 2070
• Gaps: 1571

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCGGGCGCGCGCGCCGACGGGGCGGGCGCATGCGCAAGGGGGCGCGCCGCCTCTGCCCCGCGGCGAGGGTGTC  74

Query    1  ---------------------------------------------------ATGGCGCCCTTTCCTGAAGAAGT  23
                                                               |||||||||||||||||||||||
Sbjct   75  TATGGAGAGGCGGCGGCCGCGGCTGCTGAGGCGGAGGCTGAGGCAGTGGCGATGGCGCCCTTTCCTGAAGAAGT  148

Query   24  GGACGTCTTCACCGCCCCACACTGGCGGATGAAGCAGCTGGTGGGGCTCTACTGCGACAAGCTTTCTAAAACCA  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGACGTCTTCACCGCCCCACACTGGCGGATGAAGCAGCTGGTGGGGCTCTACTGCGACAAGCTTTCTAAAACCA  222

Query   98  ATTTTTCCAACAACAACGATTTCCGTGCTCTTCTGCAGTCTTTGTATGCTACTTTCACGGAGTTCAAAATGCAT  171
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  223  ATTTTTCCAACAACAACGATTTCCGTGCTCTTCTGCAGTCTTTGTATGCTACTTTCAAGGAGTTCAAAATGCAT  296

Query  172  GAGCAGATTGAAAATGAATACATTATTGGTTTGCTTCAACAACGCAGCCAGACCATTTATAATGTACATTCTGA  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGCAGATTGAAAATGAATACATTATTGGTTTGCTTCAACAACGCAGCCAGACCATTTATAATGTACATTCTGA  370

Query  246  CAATAAACTCTCCGAGATGCTTAGCCTCTTTGAAAAGGGACTGAAGAATGT-----------------------  296
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct  371  CAATAAACTCTCCGAGATGCTTAGCCTCTTTGAAAAGGGACTGAAGAATGTTAAGCCTACTACTGTTGACTGGA  444

Query  297  --------------------------------------------------------------------------  296
                                                                                      
Sbjct  445  AGCCTTACCAATAACATAAAACAATCGAATAACAATTATTTCATGTATTATATGTAAAATATATATACTGGATT  518

Query  297  -------TAAGAATGAATATGAGCAGTTAAATTATGCAAAACAACTGAAAGAGAGATTGGAGGCTTTTACAAGA  363
                   |||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTTACAGTAAGAATGAATATGAACAGTTAAATTATGCAAAACAACTGAAAGAGAGATTGGAGGCTTTTACAAGA  592

Query  364  GATTTTCTTCCTCACATGAAAGAGGAAGAGGAGGTTTTTCAGCCCATGTTAATGGAATATTTTACCTATGAAGA  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GATTTTCTTCCTCACATGAAAGAGGAAGAGGAGGTTTTTCAGCCCATGTTAATGGAATATTTTACCTATGAAGA  666

Query  438  GCTTAAGGATATTAAAAAGAAAGTGATTGCACAACACTGCTCTCAGAAGGATACTGCAGAACTCCTTAGAGGTC  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTTAAGGATATTAAAAAGAAAGTGATTGCACAACACTGCTCTCAGAAGGATACTGCAGAACTCCTTAGAGGTC  740

Query  512  TTAGCCTATGGAATCATGCTGAAGAGCGACAGAAGTTTTTTAAATATTCCGTGGATGAAAAGTCAGATAAAGAA  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTAGCCTATGGAATCATGCTGAAGAGCGACAGAAGTTTTTTAAATATTCCGTGGATGAAAAGTCAGATAAAGAA  814

Query  586  GCAGAAGTGTCAGAACACTCCACAGGTATAACCCATCTTCCTCCTGAGGTAATGCTGTCAATTTTCAGCTATCT  659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCAGAAGTGTCAGAACACTCCACAGGTATAACCCATCTTCCTCCTGAGGTAATGCTGTCAATTTTCAGCTATCT  888

Query  660  TAATCCTCAAGAGTTATGTCGATGCAGTCAAGTAAGCATGAAATGGTCTCAGCTGACAAAAACGAGATCGCTTT  733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  889  TAATCCTCAAGAGTTATGTCGATGCAGTCAAGTAAGCATGAAATGGTCTCAGCTGACAAAAACGGGATCGCTTT  962

Query  734  GGAAACATCTTTACCCTGTTCATTGGGCCAGAGGTGACTGGTATAGTGGTCCCGCAACTGAACTTGATACTGAA  807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAAACATCTTTACCCTGTTCATTGGGCCAGAGGTGACTGGTATAGTGGTCCCGCAACTGAACTTGATACTGAA  1036

Query  808  CCTGATGATGAATGGGTGAAAAATAGGAAAGATGAAAGTCGTGCTTTTCATGAGTGGGATGAAGATGCTGACAT  881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCTGATGATGAATGGGTGAAAAATAGGAAAGATGAAAGTCGTGCTTTTCATGAGTGGGATGAAGATGCTGACAT  1110

Query  882  TGATGAATCTGAAGAGTCTGCGGAGGAATCAATTGCTATCAGCATTGCACAAATGGAAAAACGTTTACTCCATG  955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGATGAATCTGAAGAGTCTGCGGAGGAATCAATTGCTATCAGCATTGCACAAATGGAAAAACGTTTACTCCATG  1184

Query  956  GCTTAATTCATAACGTTCTACCATATGTTGGTACTTCTGTAAAAACCTTAGTATTAGCATACAGCTCTGCAGTT  1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCTTAATTCATAACGTTCTACCATATGTTGGTACTTCTGTAAAAACCTTAGTATTAGCATACAGCTCTGCAGTT  1258

Query 1030  TCCAGCAAAATGGTTAGGCAGATTTTAGAGCTTTGTCCTAACCTGGAGCATCTGGATCTTACCCAGACTGACAT  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCCAGCAAAATGGTTAGGCAGATTTTAGAGCTTTGTCCTAACCTGGAGCATCTGGATCTTACCCAGACTGACAT  1332

Query 1104  TTCAGATTCTGCATTTGACAGTTGGTCTTGGCTTGGTTGCTGCCAGAGTCTTCGGCATCTTGATCTGTCTGGTT  1177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTCAGATTCTGCATTTGACAGTTGGTCTTGGCTTGGTTGCTGCCAGAGTCTTCGGCATCTTGATCTGTCTGGTT  1406

Query 1178  GTGAGAAAATCACAGATGTGGCCCTAGAGAAGATTTCCAGAGCTCTTGGAATTCTGACATCTCATCAAAGTGGC  1251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GTGAGAAAATCACAGATGTGGCCCTAGAGAAGATTTCCAGAGCTCTTGGAATTCTGACATCTCATCAAAGTGGC  1480

Query 1252  TTTTTGAAAACATCTACAAGCAAAATTACTTCAACTGCGTGGAAAAATAAAGACATTACCATGCAGTCCACCAA  1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTTTTGAAAACATCTACAAGCAAAATTACTTCAACTGCGTGGAAAAATAAAGACATTACCATGCAGTCCACCAA  1554

Query 1326  GCAGTATGCCTGTTTGCACGATTTAACTAACAAGGGCATTGGAGAAGAAATAGATAATGAACACCCCTGGACTA  1399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCAGTATGCCTGTTTGCACGATTTAACTAACAAGGGCATTGGAGAAGAAATAGATAATGAACACCCCTGGACTA  1628

Query 1400  AGCCTGTTTCTTCTGAGAATTTCACTTCTCCTTATGTGTGGATGTTAGATGCTGAAGATTTGGCTGATATTGAA  1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGCCTGTTTCTTCTGAGAATTTCACTTCTCCTTATGTGTGGATGTTAGATGCTGAAGATTTGGCTGATATTGAA  1702

Query 1474  GATACTGTGGAATGGAGACATAGAAATGTTGAAAGTCTTTGTGTAATGGAAACAGCATCCAACTTTAGTTGTTC  1547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GATACTGTGGAATGGAGACATAGAAATGTTGAAAGTCTTTGTGTAATGGAAACAGCATCCAACTTTAGTTGTTC  1776

Query 1548  CACCTCTGGTTGTTTTAGTAAGGACATTGTTGGACTAAGGACTAGTGTCTGTTGGCAGCAGCATTGTGCTTCTC  1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CACCTCTGGTTGTTTTAGTAAGGACATTGTTGGACTAAGGACTAGTGTCTGTTGGCAGCAGCATTGTGCTTCTC  1850

Query 1622  CAGCCTTTGCGTATTGTGGTCACTCATTTTGTTGTACAGGAACAGCTTTAAGAACTATGTCATCACTCCCAGAA  1695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGCCTTTGCGTATTGTGGTCACTCATTTTGTTGTACAGGAACAGCTTTAAGAACTATGTCATCACTCCCAGAA  1924

Query 1696  TCTTCTGCAATGTGTAGAAAAGCAGCAAGGACTAGATTGCCTAGGGGAAAAGACTTAATTTACTTTGGGAGTGA  1769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TCTTCTGCAATGTGTAGAAAAGCAGCAAGGACTAGATTGCCTAGGGGAAAAGACTTAATTTACTTTGGGAGTGA  1998

Query 1770  AAAATCTGATCAAGAGACTGGACGTGTACTTCTGTTTCTCAGTTTATCTGGATGTTATCAGATCACAGACCATG  1843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AAAATCTGATCAAGAGACTGGACGTGTACTTCTGTTTCTCAGTTTATCTGGATGTTATCAGATCACAGACCATG  2072

Query 1844  GTCTCAGGGTTTTGACTCTGGGAGGAGGGCTGCCTTATTTGGAGCACCTTAATCTCTCTGGTTGTCTTACTATA  1917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GTCTCAGGGTTTTGACTCTGGGAGGAGGGCTGCCTTATTTGGAGCACCTTAATCTCTCTGGTTGTCTTACTATA  2146

Query 1918  ACTGGTGCAGGCCTGCAGGATTTGGTTTCAGCATGTCCTTCTCTGAATGATGAATACTTTTACTACTGTGACAA  1991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  ACTGGTGCAGGCCTGCAGGATTTGGTTTCAGCATGTCCTTCTCTGAATGATGAATACTTTTACTACTGTGACAA  2220

Query 1992  CATTAACGGTCCTCATGCTGATACCGCCAGTGGATGCCAGAATTTGCAGTGTGGTTTTCGAGCCTGCTGCCGCT  2065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CATTAACGGTCCTCATGCTGATACCGCCAGTGGATGCCAGAATTTGCAGTGTGGTTTTCGAGCCTGCTGCCGCT  2294

Query 2066  CTGGCGAA------------------------------------------------------------------  2073
            ||||||||                                                                  
Sbjct 2295  CTGGCGAATGACCCTTGACTTCTGATCTTTGTCTACTTCATTTAGCTGAGCAGGCTTTCTTTCATGCACTTTAC  2368

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2369  TCATAGCACATTTCTTGTGTTAACCATCCCTTTTTGAGCGTGACTTGTTTTGGCCCCATTTCTTACAACTTCAG  2442

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2443  AAATCTTAATTTACCAGTGAATTGTAATGTTGTTTCTCTTGCAAATTATACTTTTGGTTTAGAAAGGGATTAGG  2516

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2517  TCTTTTCAAAAGGGTGAGAACAGTCTTACATTTTTCTTTTAAATGAAATGCTTTAAAGAATGTTGGTAATGCCA  2590

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2591  TGTCATTTAAAGTATTTCATAGATAATTTTGAGTTTTAAAGTCCATGGAGGTGATTGGTTCTCTTTACACATTA  2664

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2665  ACACTGTACCAAGCTTTGCAGATCTTTTCCGACACACATGTCTGAAGACTTATTTTCAAAGACAGCACATTTTT  2738

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2739  GGAAACTAATCTCTTTTCCGTAATATTTCCTTTATTTCAATGATTCTCAGAAGGCCAATTCAAACAAACCCACA  2812

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2813  TTTAAGGTTCTTTAGGATTATAGAATAAATTGGCTTCTGAGTGTTAGCTCAGTGAGCTAGGAAAGCACCAATCG  2886

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2887  ATATTTGTTTCCTTTAGGGATACTTTGTTCTCACCACTGTCCCTATGTCATCAAATTTGGGAGAGATTTTTTAA  2960

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 2961  AATACCACAATCATTTGAAGAAATGTATAAATAAAATCTACTTTGAGGACTTTACCAAGTAATACTGTTGTGTT  3034

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3035  GTGATTTTTATTATAAATCTCAATCCAGGTTTACTTTAGTATAGAATAGGACTACATACTTTGTCTTTGGACCT  3108

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3109  CCCATGAACTTATTACCCTGACAAATAGTTTTAGACAGATACTGAATTTTATTGAGCTGAATTTTCTTTTTGAA  3182

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3183  ATGAGTTATTCAGTAGTCAAAATTTGAATCCGTAAGTATATCTACTTTGCTTTGTTAAAACATCATGAGAGTGG  3256

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3257  AGGCCTGCCACCCAGAAAGGCACATACTAGTGCCTTTTAGTACAATTTTATGTCATGTAGAAGAAAATGGCAAT  3330

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3331  GTTCCTCCTATTGATACAGATACAGGCATATGTCATCTTATTGCGTTTTGCTTTATTGCACTTTGCAAATAATG  3404

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3405  CATTTTTTACAAATGGAAGGTTTATGGCAACTCTGCGTTGAGCCAGTCTATTGGTGCCATGTTTCCAATAAAAC  3478

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3479  TTCTCCTTTCATGTCTCGTATATTGTGATAATTCTTGGAGTATTTCATAGTTTTTCACTATTATTAAATCTGTT  3552

Query 2074  --------------------------------------------------------------------------  2073
                                                                                      
Sbjct 3553  GTGGTGATCTGTGGCCAGTGATTGTTGTTACTATTGTAATTGCTTTGGAATGCCATGAACTGTGCCCTAATAAG  3626

Query 2074  ------------------  2073
                              
Sbjct 3627  ACAGAGAACTTAATTGAT  3644