Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08070
Subject:
NM_001164537.2
Aligned Length:
2658
Identities:
2495
Gaps:
162

Alignment

Query    1  ATGCCAGGCGGGGGTCCTCAGGGCGCCCCAGCCGCCGCCGGCGGCGGCGGCGTGAGCCACCGCGCAGGCAGCCG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCCAGGCGGGGGTCCTCAGGGCGCCCCAGCCGCCGCCGGCGGCGGCGGCGTGAGCCACCGCGCAGGCAGCCG  74

Query   75  GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA  148

Query  149  CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG  222

Query  223  GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT  296

Query  297  TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG  370

Query  371  GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA  444

Query  445  GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC  518

Query  519  AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA  592

Query  593  CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA  666

Query  667  CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC  740

Query  741  CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACAC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  741  CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACAC  814

Query  815  GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC  888

Query  889  ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG  962

Query  963  GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA  1036

Query 1037  GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT  1110

Query 1111  GATAA---------------------------------------------------------------------  1115
            |||||                                                                     
Sbjct 1111  GATAAAGTAGAGACGGGGTTTCACTATGTTGGTCAAGCTGGTCTTGAACTCCTGACCTCAAGCAATCCACCTGC  1184

Query 1116  ---------------------------AGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAA  1162
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTCGGCCTCCCAAAGTGCTGGGATTACAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAA  1258

Query 1163  TCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTC  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTC  1332

Query 1237  CAGGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCC  1310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAGGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCC  1406

Query 1311  GAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAA  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAA  1480

Query 1385  AGCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTG  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTG  1554

Query 1459  AGAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCT  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCT  1628

Query 1533  GTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCC  1606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCC  1702

Query 1607  ATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATC  1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATC  1776

Query 1681  ACTACTAAGGTGTGTATGAGTGAGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACT  1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  ACTACTAAGGTGTGTATGAGTGAGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACT  1850

Query 1755  ACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGG  1828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGG  1924

Query 1829  AGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGG  1902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGG  1998

Query 1903  AATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGC  1976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  AATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGC  2072

Query 1977  CTATGAAACAAGTGTGAAGGAAAATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGT  2050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CTATGAAACAAGTGTGAAGGAAAATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGT  2146

Query 2051  GTCCACTGCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAG  2124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GTCCACTGCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAG  2220

Query 2125  GAAGCCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCC  2198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GAAGCCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCC  2294

Query 2199  CCCCAGGCTCCACTCCGAGGATAAAAGGAAGACCCCTTTGA---------------------------------  2239
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct 2295  CCCCAGGCTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGTATTGGAAGAATGGAAGACTCACCTCATCC  2368

Query 2240  ---------------------------------AGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTGT  2280
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCTCTCTGCACTGTGCTGGAGGTGAACAGAAAGAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTGT  2442

Query 2281  GAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATCT  2354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATCT  2516

Query 2355  CATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCAG  2428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  CATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCAG  2590

Query 2429  CAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC  2496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC  2658

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