Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08210
- Subject:
- XR_385390.3
- Aligned Length:
- 3163
- Identities:
- 778
- Gaps:
- 2349
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCTCTGCTGGCGCTAAACCCCGGAGAGCGGAGCGTGCACGCTGAGCCTCCTCGGCGGGCCCGGCCGCGGCGC 74
Query 1 -------------------------------------------------------ATGTCCAACCGAGTGGTCT 19
|||||||||||||||||||
Sbjct 75 TGGGCATGCTCAGTGGGCCGGCCCCGGTAGAGCGGCGAGCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCT 148
Query 20 GCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAGGACCGCATCTGAATGCACAGCTAGAAGGTTGG 93
||||.||||||||.||||||||||||||||||||.|||||||||||.||.|||||.||.|||||.|||||||||
Sbjct 149 GCCGGGAAGCCAGCCACGCCGGGAGCTGGTACACCGCCTCAGGACCTCAGCTGAACGCTCAGCTGGAAGGTTGG 222
Query 94 CTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGCCATTATTGCCCCCCATGCAGGATATACGTACTGTGG 167
||||||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||.||.||||||||
Sbjct 223 CTTTCACAAGTACAGTCTACGAAAAGACCTGCTAGAGCCATTATTGCACCCCATGCGGGATACACATACTGTGG 296
Query 168 GTCTTGTGCTGCCCATGCTTATAAACAAGTGGATCCGTCTATTACCCGGAGAATTTTCATCCTTGGGCCTTCTC 241
|||.|||||||||||||||||.||||||||||||||.|||.|||||||||||||||||||||||||||||||.|
Sbjct 297 GTCCTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTGTTACCCGGAGAATTTTCATCCTTGGGCCTTCCC 370
Query 242 ATCATGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACACCTCTGTATGACCTTCGTATT 315
|||||||||||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||||||
Sbjct 371 ATCATGTGCCCCTGTCTCGATGTGCACTCTCCAGTGTGGATATATATAGGACTCCTCTGTATGATCTTCGTATT 444
Query 316 GACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTGCAGACAGATGAAGATGA 389
||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 445 GACCAAAAGATTTACGGAGAGCTATGGAAGACAGGAATGTTTGAACGAATGTCTCTGCAGACAGATGAAGATGA 518
Query 390 ACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCATTATTC 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 519 ACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAAGATGAGTTTACCATTATTC 592
Query 464 CTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGAT 666
Query 538 CCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGGGGTCAAAGGTTCCGTTACAGTTACTATGATGA 611
||||||||||||||||||||||||||||||||||||||.|||
Sbjct 667 CCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCACTGG-------------------------------- 708
Query 612 ATCCCAGGGGGAGATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAACAATTAGACC 685
|||||||||||||||||||||||||||.|
Sbjct 709 ---------------------------------------------GGGTATGAGTATTATAGAACAATTAGATC 737
Query 686 CTGTATCTTTTAGCAATTACTTGAAGAAATACCATAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTA 759
|||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CTGTATCTTTTAGCAATTATTTGAAGAAATATCATAATACTATATGTGGAAGACATCCCATTGGGGTGTTATTA 811
Query 760 AATGCTATCACAGAGCTCCAGAAGAATGGAATGAATATGAGTTTTTCGTTTTTGAATTATGCCCAGTCGAGCCA 833
|||||||||||||||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 812 AATGCTATCACAGAGCTTCAGAAGAATGGAATGAATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCGAGCCA 885
Query 834 GTGTAGAAACTGGCAAGACAGTTCAGTGAGTTATGCAGCTGGAGCACTCACGGTCCAC---------------- 891
||||||||.||||||||||||||||||.|||||.||||||||||||||||||||||||
Sbjct 886 GTGTAGAAGCTGGCAAGACAGTTCAGTCAGTTACGCAGCTGGAGCACTCACGGTCCACTGAAGCTCCGATCCTC 959
Query 892 -------------------------------------------------------------------------- 891
Sbjct 960 AGGGACACCACCTGCACAGACTCGTACTCTGTCCAGGGTCCAGCCTAGCCTTTACCAAGATGTTGGTTCTGGTG 1033
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1034 TGGGGGGATTCTGAAACCTCAGACTAATAGAACTCTCTTCTTCTTTTCTAGTAGGTGTAGTCCTCCTTAATTTC 1107
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1108 AACTCATTTTAAAAATGCTTTCTAGTTTGAGGCAGTGGAAGGAAGGCTGGAATCAAAATATTTGCCCAAATTGG 1181
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1182 CACACAGTGACTTGTAAAGCATTTAGCATATCTGAAATTTGCACTCTTTGCAGACTCATGCACATATATTCCGC 1255
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1256 TTTCAGAATAGTTTTGCAAATTGTACACAGACAAAGGGTGGAAGCTTTTTAATAAAAGAAACTGCATTTATAAA 1329
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1330 TGATCTGTATTAGAATATAAGAAATCTCCAGTTATAGACAATTACTACCCATGTTGTACAACAGATACCTTCTA 1403
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1404 TTTTAGTTGCTAATAAAGGGCTACACAACTCAAAATAGTCTGATTTAAACTTATTGCTTTGTGGTATAAATGGA 1477
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1478 AATTGTTTTTTATTAATTCTATCTCAGAATTTTTGTTAAAATGGCAAGCCTCAGCTTCGATGTAATAATGTTAA 1551
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1552 AATTATTTTATTTTTACATTTATGTGATTTTTTTTTAAATCACAGAAATTATAGTCATATTTTAAAGTTAACTT 1625
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1626 TCAAAACTATAGTCATTGCATTTTTGTGTGTGACATACCCTCATGTCATTATTATATTGTACTACAATATAAAT 1699
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1700 TCAAGGATGCTTTAAAAACAAGTAGATTTATTCCTTTCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGA 1773
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1774 TATTGAAGAGTGTCATTAGTTGTGTTTCAAGTTGTTGCAGACCATCACCACTATGGTTTTTTGTTTGTTTGTTT 1847
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1848 GTTTTTATTGCTTTAAGCAATTTAACTCTTTCACTTGAATTTTTAGCAAGAAATCATTAACAATATTAGTAACA 1921
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1922 AGGCCTATTGGACTTCTGATAGTCCTGCAAAAAATTTGTTTGGGGAGGGCATGATTTTTGGTGCGGCTCTTCCA 1995
Query 892 -------------------------------------------------------------------------- 891
Sbjct 1996 ACTAAAATAATGGTATGGTGTTGTATTTCTTTATCATAGATTTATTCTAGTCATTTTGGGGAGGAAAGTGTTAA 2069
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2070 CTCATTAAGCCATCATGCATGTTGTTCATCATCCCTGTTTTACCAACACTGGATGTTTCTATAACATTGGAGAG 2143
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2144 TGTTAGTCTTCAGTGTTATACCCAAGTAGCACAAGCTTTAGATGCCTTGCACCAATTTTCTTTTGGAGATTTAC 2217
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2218 GTTTCTTACTTATTAAATACCAATTTTCTATTCTCAAGAATGGGAGAAAATAATACTACCTTTTAGATTTAAAA 2291
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2292 TTTACCTACTTATACATGTAGGAAATATACTCTTATACATCAGTGTTTTATTTTCCATTATTTAGATACGCTTT 2365
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2366 TGAGTACTATAAATATTTATTTCTTGTTTAATACAGATTATAAAAATTTCTGAATTGACAATAGTGAATTTTTA 2439
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2440 AAATAATGTTTTCTGAGTATAGAATTTGAAAATACTGAAAAGTCAGAAGAAAAAATCTATTACCTACAATCTCA 2513
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2514 CTACTCCAGAGATAACACTGTTAAATGTTTTTCTGTATTTACTTGTAGTCCTTGTGTTTTTTATGAGTGTGTAT 2587
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2588 GTGTGTGTGTGTGTGTGTGCAACAACAGAATTGAGATTATAGTGCCCATACATTTGCGTTATGCCCTGTTATCC 2661
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2662 TAAGTATCTACTACCTGTGTCTCTGAAAGCACTATTTTAAAAATGCCTGCCTAATATGCTATACTGTATGAAAA 2735
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2736 TAGTTCTCTCTTTGGATGTTAGGCTGTTTCTAATTTTCCTCAATTTTATAATGGTACGGACATTCTGTGTAAAT 2809
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2810 TAGACCCAGTCTCTAGGATATAATCATGAAAATGAAATAAATGGTTTACATGATAATTTTGTAGGCCCTTTAAA 2883
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2884 AGTATGCCAAATTATATTTTCAATAGATTGTATCAAATTAACAGCACCCCCACATCAGCATCGTTTCTTTTAAT 2957
Query 892 -------------------------------------------------------------------------- 891
Sbjct 2958 TTTTGAAAAATTGTTAAGCAAGTAATTGTTTCTTTTTTAAAGACTTTCTTTCGAATTAGTCATTTATTGTCTTT 3031
Query 892 ------------------------------------------------------- 891
Sbjct 3032 TATAAATTTAGAATGTTTTTTTTGAAAAACAACATTAAAGAGACGTCTAGTTCTA 3086
