Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08344
- Subject:
- XR_002956793.1
- Aligned Length:
- 4651
- Identities:
- 962
- Gaps:
- 3648
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACATCGGCCCCAGCCCCTGCCTGGGTCCCCATCCAGGACCCCCTTCCAGTCTCTGCCCCTGGCCTGGCCCCCAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGGCCTCGGCCCTCGTTCCACCCCCTGTCACAAATCCCAGCCCAGGCCCTGTCCCAGCCCCATTCCCAGTGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCTTAAGGCCCTGGCTCAACCCCGTCCCTTGCTGCAGTCCCCATCACAGCCCTTCCTTCCATCCCACTCCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCCTTGTTCAAGCCCCAGTGTCCAGCCCAGCCCAACCCATTATCTCAGCCTTTGCCCTCATCTCTGTGTTTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCAAGTCTCTCCCTCTAGTCCCCCCTATCTCTCATACTCTGCCCCTCTCCCAGCCTAGACTCAAGTCTGGGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGCTGCCGCCAGCCCTATTGCTGCTGTTGCTGTTCTCTGTCCTTGGCCCAGGGGCTGGAGGCCTTTTCCTGAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGATTACTCCACCTGCTCACCCCGCAAGCTGAGTCCTTTCCGCTCCTTTGCCAGCACCGAGCTCTTCCACTTCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGTTCCTGAGGACACATTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAAGGGGGAACTTTTGGGGAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CACTGCCCAGACCAAAGTGTGACTGTGTATTTCCGGTCCGGGGCACCCCCTGTCATCAATCCCCTGCATACACA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTCCCAGGGGACACAGCTGTGCCTGGGGTTTTCTCACTGACCCTCAGCTGGACACTGCCCAACCGCACCTCAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCATCTTTAACGTCAGCAGCCCCTTACCTGGGGACTGGTTCTTGGCTGCCCACCTTCCCCAGGCCCACGGCCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATCTCTGTCAAGGGTCTCCAGGATGAGTGTCAGTACCTCCTTCAGCCGCAGCTGATTGTCCGGCGTTTGCTGGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGTCGCTGTGCTGGTTCCTGGCCGGCCCTCAGAGCAAACCCTCTCCCCACACAATCGCTCAGCCCTGTACAAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCTTTGTGCCCAGCTTCACTTACAGGGTTTCAGCACAGCTGGTGTGTGTGGGGGGCCGTGGGGTATCTGCCTGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCCCTGTCACTGCGTCTGCGTCCCAAAGCCCCACCCCTGCACAACTCAAGCTCTGTGGCCTGTGGAGGTGCCTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGATGCCAGCTGGAGCTGGCACTGCCCCCCTGGGGGCACTGGGTCTACGTGCGTGTGGAAACATCATCCCGGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCCTGGTAGGACCATCCGCTTCCAGCTGTGTGTGCGGTTGCAAGAGTGCCCACAGCCCGGCCTGCTCCGAGCC 1258
Query 1 ------------------ATGAACATGCCCCAGTCCCTGGGCAACCAGCCACTGCCCCCAGAACCGCCATCCCT 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGGTCCCTGGAGCTGCCATGAACATGCCCCAGTCCCTGGGCAACCAGCCACTGCCCCCAGAACCGCCATCCCT 1332
Query 57 TGGAACCCCTGCGGAGGGGCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGCGCCCGACTCTGCGCA 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGAACCCCTGCGGAGGGGCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGCGCCCGACTCTGCGCA 1406
Query 131 ACGAGCTGGACACCTTCTCTGTCCACTTCTACATCTTCTTTGGCCCAAGTGTGGCCCTTCCCCCTGAGCGCCCA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ACGAGCTGGACACCTTCTCTGTCCACTTCTACATCTTCTTTGGCCCAAGTGTGGCCCTTCCCCCTGAGCGCCCA 1480
Query 205 GCCGTGTTCGCCATGAGGCTGTTGCCAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAGCTCAATGC 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GCCGTGTTCGCCATGAGGCTGTTGCCAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAGCTCAATGC 1554
Query 279 ----------------------GAGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTTGACTCACGAG 330
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTTTTTCTGTTCTGAGAATGGAGAGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTTGACTCACGAG 1628
Query 331 GTGCCCTTGAGCCTGGGGGATGCAGCAGTGACCTGTTCCAAAGAGTCCCTGGCCGGCTTCCTCCTCTCTGTCAG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTGCCCTTGAGCCTGGGGGATGCAGCAGTGACCTGTTCCAAAGAGTCCCTGGCCGGCTTCCTCCTCTCTGTCAG 1702
Query 405 TGCCACCACCAGGGTTGCCAGGCTGCGAATCCCATTCCCGCAGACGGGGACCTGGTTCCTGGCCCTCCGCTCCC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGCCACCACCAGGGTTGCCAGGCTGCGAATCCCATTCCCGCAGACGGGGACCTGGTTCCTGGCCCTCCGCTCCC 1776
Query 479 TGTGCGGGGTGGGGCCTCGGTTCGTGCGGTGCCGCAACGCGACGGCCGAGGTGTGGATGCGCACCTTCCTGTCC 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1777 TGTGCGGGGTGGGGCCTCGGTTCGTGCGGTGCCGCAACGCGACGGCCGAGGTGCGGATGCGCACCTTCCTGTCC 1850
Query 553 CCATGCGTGGACGACTGCGGGCCCTACGGCCAGTGCAAGCTGCTGCGCACACACAATTATCTGTACGCAGCCTG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CCATGCGTGGACGACTGCGGGCCCTACGGCCAGTGCAAGCTGCTGCGCACACACAATTATCTGTACGCAGCCTG 1924
Query 627 CGAGTGCAAGGCCGGGTGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCACCTATGGATTCCAGCTGC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CGAGTGCAAGGCCGGGTGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCACCTATGGATTCCAGCTGC 1998
Query 701 TGTCCACACTCCTGCTCTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGTCCTGGCCATTCGGAGTCGATAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGTCCACACTCCTGCTCTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGTCCTGGCCATTCGGAGTCGATAT 2072
Query 775 GTGCTGGAAGCTGCAGTCTACACCTTCACCATGTTCTTCTCCACGGT-----ATGC------------------ 825
|||||||||||||||||||||||||||||||||||||||||||||.| ||||
Sbjct 2073 GTGCTGGAAGCTGCAGTCTACACCTTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAGCCAGGCAT 2146
Query 826 GGTGG-TGTCTGCATCTT--ATCACTGGGTGCT-------TGTG----CATGG---------TG-----GTGGG 871
.|||| |.||||||||.| |..||...||||| |||| |.||| || |||||
Sbjct 2147 CGTGGTTTTCTGCATCATGGACTACGATGTGCTGCAGTTCTGTGATTTCCTGGGCTCCTTAATGTCCGTGTGGG 2220
Query 872 TCACAGTCTGTATTTCCA--CCACGTTCT-----CCGAG--------GGT----------TTGGGA-------- 912
||||.||| |||.||| .|.|||| | |||.| ||| .|||||
Sbjct 2221 TCACTGTC---ATTGCCATGGCTCGTT-TACAGCCCGTGGTCAAGCAGGTGCTGTATTTGCTGGGAGCTATGCT 2290
Query 913 -------ATGTCTGTGC--CTT------------------------------CACTGTGTCTT----------- 936
|||.||.||| ||| |.|.||.||||
Sbjct 2291 GCTGTCCATGGCTCTGCAGCTTGACCGACATGGACTCTGGAACCTGCTTGGACCCAGTCTCTTCGCCCTGGGGA 2364
Query 937 ------CTACAGACAGAG--ACAGCAGTGCTTCCCA----------AACTGTCATG---------------CAT 977
|.||||.|.|.| .|.|.||..||||||| |||| ||.|| |.|
Sbjct 2365 TCTTGGCCACAGCCTGGGGACCTGGAGCCCTTCCCAGGACATGGAGAACT-TCCTGAGGGCCTGGAGTCCCCCT 2437
Query 978 AGATAATG--GTCATTTTTGTAA-GACACATTGGAGTAAA---------------------------------- 1014
..||.||| |||.||.| ||| ||| |||||...|
Sbjct 2438 GCATCATGGAGTCCTTCT--TAAGGAC----TGGAGCCTATGCAGGCACAGAGTCCCTCAGGACCAAGGAGTCC 2505
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2506 CTCCTGCAGGTGTGGAGCCTTTCCTGGGATGCAGAGCCTTCCCAAGACATGGATTCCTTCCCAGGGAGACAAAG 2579
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2580 CCCTGTCAGGAGCACAGCATCTTTCCAGAGGAGGTGGAGTCTATCTTGGGGAAACCAAATTTCCAGATTTTCCC 2653
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2654 AGAGGCTCAGCAACTCTGGCCTCAGGCTTCCTTCCCAGAGGCAGCGTCTGGGCTGTGCTGTGCTGTGGAGGAGG 2727
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2728 GATTGCAGGATGGATGGAGCTGGGACTGGGGCTGTCTGGGTGGCTGGTATCCTCGTTTGATACAGGTGGAGTCT 2801
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2802 GTGTGTCTCCAGTGATTGATTGGTTCAGAATGGTTCTGTGATGCCTTTTTTCCCCCTGGGGTCAGGGGTGTGGG 2875
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2876 GAAGTGGGGAAAGAGGGCCCCTCAGGGAATCAGCAGGGCTGATGGGAGCTACTGCCGGAGGCTTTTGTCACACC 2949
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2950 CTGTACACAGTCTGATCCCGCTCATCTGGGCCCTGCATTCATTTCTAAACAGTTTCTAATGCCTATTCCCCAAT 3023
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3024 TCCTATTGAGCCCGATTTGCAGTATCTGAGGGGTGTGTGTGTGTGTGTGTGTGTTTATGTATGTATACGTATGC 3097
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3098 TGAGATGATTTAAATCAGTGAGACAGACTTTCCTTATGATGCCCACACCCAACACAGAAGGAAGCCGAGGTCCC 3171
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3172 AGGAAATTGGAATAGCAGGTACACGTCTCAGGTGTGCAAGAAATATCACAAGAATGTAACTTCTGTTTTGAGCC 3245
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3246 CCCATTTTTCCTGAGTGCCAGAAAAGATCATTTGTCCATTTGGGATTCCTTCTCTTTCCATGAGGGTCATAGCT 3319
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3320 GAGTTCTGAGGGTCTTACATAATGCCAAGAAGTTGGGAGAGCATTCTCACTGATCACCAGTGTCCATACTTCAT 3393
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3394 CCATCCCCGGGATTTCCATCATTCCATCTGGTCCCCAGTCAGAGGTCCAGACAGTTCATCTGGGATGCAGAGAG 3467
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3468 ATTTCTTGTTCCCATTTGCATTACTCTCTCAGTCCTAAGGTTCTCTCTGCCACTTCTGGGCCATATGTGGAGAC 3541
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3542 CCGTAAAGTTGTCTAAGGCCTTGGCTATGCAGACACACCTTGAAGCTGTTTCTGCTCTGGGTTTTGACAGACAA 3615
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3616 GGCATGAGTTGCTGCATCTGTTAAAACTGCAAATCTATCTTGGCCTGGGGTGTGGAGCTCAGGGACTCTTCCTT 3689
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3690 TTGGGACCCTCTGTGTCAGTATTCTCACTACATCCTCTCCTCCTCTCTCTTCTTTCCCCCTTTCGTTAATATTG 3763
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3764 GAGGTGAGGAAGCCTTACTTAATGTTTTCTCCTGAATCTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCC 3837
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3838 CAGGCTGGAATGCAATGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGTCT 3911
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3912 CAGCCTCCCGAGTAGCTGGGATTAGAGGTGTGCACCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATG 3985
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3986 GGGTTTCTCCATGTTGGTCAGGCTGCTCTCAAACTCCCGGCCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAG 4059
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4060 TGCTGGGATTACAGTTGTGAGCCACCGCGCCTGGCCTCTCCTGAATCTTTTATCTATGCCTTAAGCCTTTTCTG 4133
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4134 TTCCCTTCAGGACCTAGGCTTTTGAAACCCAAAAGCCAGGAAAACATGCCTTTGTTATCTGCTTTCTGCAATCA 4207
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4208 CGTCTCTTCCATGGGGCACTGAGCAGAGAATGGTGTGGCCAAGTGAGTAGTGAGAAGCAGTGAGGAGGTGTGAG 4281
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4282 CTAGGTGTCTGTTCCCATTTTAGAAAATACTGTTCCTACATCAGAAATACCACATTAAGACGTATAGAGCCAGG 4355
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4356 TCACTGGGATGCTTGAACCCAAATAGCTGGGATTCTGGACAGAGTCAGCAGAGTACAGAAGGCTCTGAAGTGGG 4429
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4430 AGACGGAGCTGGGGTGCATCCCTCCCAGTGAGGAGGGGTCATGAGGGGCGTCTGGGAAGAGGGACATTTGAACT 4503
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 4504 AGGATTAGCTGAGTTGCCATGATGCTAAGATAATGGGAGAGTGTTCTTTGTGGTCACCAGTGTCCACATGGCAT 4577
Query 1015 --------------------------------------------------------------- 1014
Sbjct 4578 CCCTTCCCTGAGATTTTCATCACTCCCTGTGGTCTTCAGTCAGTAAAGCTCTTAGAACACTTG 4640
