Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08456
- Subject:
- NR_138092.2
- Aligned Length:
- 4696
- Identities:
- 2038
- Gaps:
- 2656
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACGACGCGCCGTGCGCCTGCGCACGGCTTGCCCATGTGTGCTGCAGCCGTCAGCCGGCCCAGCTGAGCAGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAACGGACCTTGTTAACGGCGCGGCAGCCTCCACCGCCTGCTGTTGCCCTCCTCTCTCGGTGGTCTGTCCGCC 148
Query 1 --------------ATGGGCAAGAGCCGGACGAAGCGCTTCAAGCGACCTCAGTTCTCCCCTACGGGCGACTGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CAGCGCACGTCACCATGGGCAAGAGCCGGACGAAGCGCTTCAAGCGACCTCAGTTCTCCCCTACGGGCGACTGT 222
Query 61 CAGGCCGAGGCGGCTGCGGCGGCGAATGGGACCGGAGGCGAGGAGGACGACGGGCCGGCGGCGGAGCTGCTGGA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGGCCGAGGCGGCTGCGGCGGCGAATGGGACCGGAGGCGAGGAGGACGACGGGCCGGCGGCGGAGCTGCTGGA 296
Query 135 AAAGCTCCAGCACCCGAGCGCCGAGGTCCGCGAGTGCGCCTGCGCAGGGCTGGCCCGGCTGGTGCAGCAGCGGC 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAGCTCCAGCACCCGAGCGCCGAGGTCCGCGAGTGCGCCTGCGCAGGGCTGGCCCGGCTGGTGCAGCAGCGGC 370
Query 209 CGGCACTCCCGGGCCTGGCGCGACGAGACGCCGTGCGCCGCCTCGGGCCGCTGCTGCTAGACCCCAGCCTGGCC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGCACTCCCGGGCCTGGCGCGACGAGACGCCGTGCGCCGCCTCGGGCCGCTGCTGCTAGACCCCAGCCTGGCC 444
Query 283 GTCAGGGAGACTGCAGCCGGCGCGCTGAGAAATCTCAGTGCTTGTGGAGGTTTTGAAGTTTGTGATGACATGGT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTCAGGGAGACTGCAGCCGGCGCGCTGAGAAATCTCAGTGCTTGTGGAGGTTTTGAAGTTTGTGATGACATGGT 518
Query 357 GACTAAGGATATCATGACCCCTCTGGTTGCGCTGCTAAAAGAGTGTAGTGCTGGACTGGATTCAAATGAGATGT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACTAAGGATATCATGACCCCTCTGGTTGCGCTGCTAAAAGAGTGTAGTGCTGGACTGGATTCAAATGAGATGT 592
Query 431 CTCTGCAGGAGAAAAAAGATCAGAACAGAAATTCTATTGAGAACATAGCCAATGAGACTGTGAACGTGCTGTGG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTCTGCAGGAGAAAAAAGATCAGAACAGAAATTCTATTGAGAACATAGCCAATGAGACTGTGAACGTGCTGTGG 666
Query 505 AATATATGTGAATGCAGTAGTAGAGCAGTGTCTATATTCAACAAAGAAGGGTGTTTGGAGATTGTGTTAAAGTA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AATATATGTGAATGCAGTAGTAGAGCAGTGTCTATATTCAACAAAGAAGGGTGTTTGGAGATTGTGTTAAAGTA 740
Query 579 TTTAAGTAGGTTCCCTACCAATGTTGACCTGGCTATTTCAGTAGCATATTGTTTGCAGACAGTGACTGAGGATA 652
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTTAAGTAGGTTTCCTACCAATGTTGACCTGGCTATTTCAGTAGCATATTGTTTGCAGACAGTGACTGAGGATA 814
Query 653 ACCCAGAGCTGCTGAAGTCTTTCAGTGCTACAGCATTGAACATGCTGGAATCAGCACTGCTTTCTCCTGTCAGT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACCCAGAGCTGCTGAAGTCTTTCAGTGCTACAGCATTGAACATGCTGGAATCAGCACTGCTTTCTCCTGTCAGT 888
Query 727 TCCATGGAATCTCTTCTATTGAAGACATTGGTAGCA-------------------------------------- 762
||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCATGGAATCTCTTCTATTGAAGACATTGGTAGCAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCA 962
Query 763 -------------------------------------------------------------------------- 762
Sbjct 963 AGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCATGCCTCAGCCTCCCAAGTAGCTGGG 1036
Query 763 -------------------------------------------------------------------------- 762
Sbjct 1037 ATTACAAGCGCCCACCACCACGCCTGGCTGATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGCCCA 1110
Query 763 --------------------------------------------------------------------GGCACA 768
||||||
Sbjct 1111 GGCTTGTCTCGAACTCCTGACCTCGAGTGATCCTCCCACCTTGGCCTCCCAAAGTGTTGGGATTACAGGGCACA 1184
Query 769 ATTTGGAATCTAAAGGACATTATTCCATGCAAGAGTCAAGCAGAAATCATAAATGCCTTACTAAAGATCTTATC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATTTGGAATCTAAAGGACATTATTCCATGCAAGAGTCAAGCAGAAATCATAAATGCCTTACTAAAGATCTTATC 1258
Query 843 TGAAGTTTTGGGAATGGATGCTGGTGAAATGGTTATTCAAATGAAAGAGGCTGAAACGCAAAGGTTAAAAACTG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGAAGTTTTGGGAATGGATGCTGGTGAAATGGTTATTCAAATGAAAGAGGCTGAAACGCAAAGGTTAAAAACTG 1332
Query 917 CTGCAGAGGCTGAGGAAATATTAGAGAACACTAATGGGGATGATTTGATTGAAGATGATGAAATGGAAGGAATT 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTGCAGAGGCTGAGGAAATATTAGAGAACACTAATGGGGATGATTTGATTGAAGATGATGAAATGGAAGGAATT 1406
Query 991 TCTCATAAAAGAAGAGTCAGAAGGAAAACTTTCGTTTCAGATTTACTTCCGCCCACTGACAAGGAACTGAGAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TCTCATAAAAGAAGAGTCAGAAGGAAAACTTTCGTTTCAGATTTACTTCCGCCCACTGACAAGGAACTGAGAGA 1480
Query 1065 GACTATAGCATTGCTGACAGCCCAACAGACTGCTCTGGAAATTATTGTCAACATGTGCTGCAATGA-------- 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GACTATAGCATTGCTGACAGCCCAACAGACTGCTCTGGAAATTATTGTCAACATGTGCTGCAATGAAGTTCTGC 1554
Query 1131 ------------------AGATCCCTCTGATGACGAATGGGAAGAGCTTTCTAGCAGTGATGAAAGTGACGCAT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGGTTTGCCCGCTTCCCAGATCCCTCTGATGACGAATGGGAAGAGCTTTCTAGCAGTGATGAAAGTGACGCAT 1628
Query 1187 TTATGGAGAATTCCTTCAGTGAGTGCGGGGGACAGCTGTTTTCTCCCCTCTGCCTCTCCCATGAAGTTCACACG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTATGGAGAATTCCTTCAGTGAGTGCGGGGGACAGCTGTTTTCTCCCCTCTGCCTCTCCCATGAAGTTCACACG 1702
Query 1261 GCTCTCACCAACTACCTCATCCCAAAGAAGATTTTTGAGAAAACTGCCTTTCCAAACAGCATTGCAGTTGACCT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GCTCTCACCAACTACCTCATCCCAAAGAAGATTTTTGAGAAAACTGCCTTTCCAAACAGCATTGCAGTTGACCT 1776
Query 1335 ATGTTCTAGGAACCCTACTTGGAAACCTTTGATTAGAAAAATGAACACTATTCAGTGCAGAGCCCTCTTCTGTC 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATGTTCTAGGAACCCTACTTGGAAACCTTTGATTAGAAAAATGAACACTATTCAGTGCAGAGCCCTCTTCTGTC 1850
Query 1409 TCCAGAGTCTTGTGTCCCTCCTGGATGTGGAGCACCTGGGAGGAGCCGCAGCCCTTCAGACGCTTGCACAGCAT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCCAGAGTCTTGTGTCCCTCCTGGATGTGGAGCACCTGGGAGGAGCCGCAGCCCTTCAGACGCTTGCACAGCAT 1924
Query 1483 CTGTCACAGCTGCTTTTTTCTCAACCAGATTTTGCTAAACATGTTGACTTTCTAGAAGCCATAAGTAGTGCTTT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CTGTCACAGCTGCTTTTTTCTCAACCAGATTTTGCTAAACATGTTGACTTTCTAGAAGCCATAAGTAGTGCTTT 1998
Query 1557 GAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTTCCCAGTGCATGACTCCTGATCAGCTGATGACATTAT 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTTCCCAGTGCATGACTCCTGATCAGCTGATGACATTAT 2072
Query 1631 GCAAAGCAGGCATTCATAGTAGTAATGTCGGGGTTAGAGTGAATGTCGTTAGCATTTTAGGAATCACTGGCAGC 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GCAAAGCAGGCATTCATAGTAGTAATGTCGGGGTTAGAGTGAATGTCGTTAGCATTTTAGGAATCACTGGCAGC 2146
Query 1705 GTCCTTGCCAAAGAAGATGGTACACTTGAAACTCTTAAGAACATTGGGTGCTTTCTGCTTGAAGTTACCACCAA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GTCCTTGCCAAAGAAGATGGTACACTTGAAACTCTTAAGAACATTGGGTGCTTTCTGCTTGAAGTTACCACCAA 2220
Query 1779 AGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCCCTCTTTGATGTTTTTGCAGATGGTAAAGAAGCCG 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCCCTCTTTGATGTTTTTGCAGATGGTAAAGAAGCCG 2294
Query 1853 AAAGAGCCTCGATTCAAATTAAATTATTATCTGCTTTGAAAGAATTCCAGCCGGTCTTTAAAATGAAGATACGT 1926
|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AAAGAGCCTCGATTCAAATTAAATTATTATCTGCTCTGAAAGAATTCCAGCCGGTCTTTAAAATGAAGATACGT 2368
Query 1927 AAAGAAGGGAGAGGTAACTATAGCACAGATCAGCTGTGTGTTCTTGACAATGTGAAAATGAATTTGCGAAGATT 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAAGAAGGGAGAGGTAACTATAGCACAGATCAGCTGTGTGTTCTTGACAATGTGAAAATGAATTTGCGAAGATT 2442
Query 2001 TATTGCTTATCAAGAAACTGTTGAGAAAAGACTGACTTCT---------------------------------- 2040
||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TATTGCTTATCAAGAAACTGTTGAGAAAAGACTGACTTCTTAAACAATCCAAAAAAGAAACCAGTTCTTCCCCC 2516
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2517 AAAGTATTCAATGCTTAGAATACTAAAAGGTTTTCTTTGAATGTATATGTTTCTGAAAGTCATTTTTTAATGAT 2590
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2591 TACATTCTGTACATTCTGTAAAAACTTCAAAACCTGGCCAGGCATGGTGGCTCACGCCTATAATCCCAGCACCT 2664
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2665 TGGGAGACCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTTGAGGCCAGCCTGGCCAACATGGTGAAACCGCAT 2738
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2739 GCATAAGCATGGTGGCACATGCCTGTGATCCCAGCTACTCGGGAGGCTGAGGGAGGAGAGTCGGTTGAACCTGG 2812
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2813 GAGACAGAGGTTGCAGTGAGCTGAGATCACGCTACTGCACTCCAGCCTGGGTGACAGAGGGAGACCCTGTCTCC 2886
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2887 AAAAAAAAAAAAAAAAAAAAACTTCAAAACCTGTCAGAAACTCTGTTGCTGGTTTTTTTGTGTGTGTGTTTTGT 2960
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 2961 TTGTTTGTTTTGTTTTGTTGTTTTTTTCTTTTTTGAGATGGAGTCTCACTGCTGCCCAGGCTGTATTACAGTGC 3034
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3035 TGCGATCTTGGCTTACTGCAACCTCTGCCATTCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCT 3108
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3109 GGAATTACAGGCACCCACCACCACACCTTGTTTTTGTTTTTGGTTTTTTGGTTTGTTTTTTTTTTTCAGTAGAG 3182
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3183 ACGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAATTCCTGACCTCAAGTGATCCGCCTGCCCTGGCCTCCCAA 3256
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3257 AGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCAGAAACTCTTTTTTAAGTGATGAGATCTGTGTGGCA 3330
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3331 TTTCTAGCGCTCTCTAAATTATGTCTCTGGCATATTTTAATCACTGGAAACTCAAAGAGTGGAAGAGTGGAAGT 3404
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3405 GCGAAGGAATCTCAGGTAGCTCTTAACTAATTCGCCAGCAGTGAAGAAACTTCAACCAATCATGTTTTCCTTGA 3478
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3479 ATTTTGCAAAGAAAGAAAATCCAAAGCATTGCTTGGATGTTCTTTTAAGGCATTTTATATCAGTTGAACCTTAA 3552
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3553 ACTGAAATATGAAGACAAGCTTTATAAACTAGTTTTTTGATATGAAGTATATCAATTATGTTTGCCTTTTGTGA 3626
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3627 AGAAGTAAATGAGTTGAATTTCTATTTCACTTACTAGATTATACTAATGAGCTAATGGGGTCATTGCCATCCTC 3700
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3701 CCTACTCATGACTTTGATGAGTTATTGCTGTAACATCACTTCTTGATTTAATTTGATATGGAATCAGAATTGGG 3774
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3775 AGAAGGTATTTTTAAATAAACAACTTTTTAATGGAAAGTTTTGTGTCTTACAAAATCTTTTTTAAGATACCAAA 3848
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3849 TAAAGGGTTATTAGTAGAAAATGAGATGATACTATTCGTGGATATTTGTTTGCTAATGCATATTGCTTGGAATA 3922
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3923 TATGTGAGACATTAAAAAAATGACAGCACGACTTTGCAGCATTACCTCTCAGTGTCTTCGAAGTACTAGGTGAC 3996
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 3997 AGCTGGGGCTCGAGGGAGTTTCCCTGTGCATCATTGTCTCGGCTGGGCCTCTGAACCGGCTTCATTGTCCATCC 4070
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4071 GTTTGCCTGATGAGAAGGGAAATTTGAAAATTTCTGTACAGTTGATCTCAGTTGCCCTGACAAAAGGCCCAATC 4144
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4145 CCCAGTACAGGACTTAATTTTAATTCACTGCTTCCACAGCAGCACAAAATGAGCTAGTAGTGTTAGATTTCATC 4218
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4219 TGCACTGTGATGTATTTTACAGTTTTCACCTATATGATATAGACTGTTGGGAAACCAAGATTGTTTCCCAGCCC 4292
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4293 TAAGAGTTCCTAGCCCATGGCACCAAGTAAAATAACCCAAATTGTGTATATGGTGGGAAAACAGAAATGTATAC 4366
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4367 CATATACAACACCTCGCTTTATTATGGTCCTTGCTCATGAATTTTAAGGTATATATGTATGTTTAGTGATCATT 4440
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4441 TCAGCTAAATGATTGGCCCAAGCATGTCTCCTTGGAGAACGACTCTTCCAAAAAAGAAAGTATTAGAGTTCTCT 4514
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4515 CTGCCTCAATTATTTATAAAATATAATTATTTTCAAGGAGAAAAAAGTTCCTCATTCTGTTTATTCTTCCCCAC 4588
Query 2041 -------------------------------------------------------------------------- 2040
Sbjct 4589 AGTTTCTGACCTATAAACAATATCCAGGATATTTAGCACAGGACCTAGTATATAGTCGACTCTTCATAAATATT 4662
Query 2041 ---------------------------------- 2040
Sbjct 4663 TGTTGAGTAAATAAATGCTGGTGATTTTCTCGTT 4696
