Construct: ORF ccsbBroad304_08456

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009031.1_s304c1, BRDN0000461956
Derived from:
ccsbBroadEn_08456
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HEATR3 (55027)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08456
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55027 HEATR3 HEAT repeat containing 3 NM_182922.4 99.9% 100% 591T>C;1888C>T
2 human 55027 HEATR3 HEAT repeat containing 3 XM_005256013.2 87.2% 84.9% (many diffs)
3 human 55027 HEATR3 HEAT repeat containing 3 XR_002957828.1 87.2% (many diffs)
4 human 55027 HEATR3 HEAT repeat containing 3 NM_001329729.2 82.6% 82.7% 0_1ins351;240T>C;1537C>T
5 human 55027 HEATR3 HEAT repeat containing 3 NM_001329730.2 82.6% 82.7% 0_1ins351;240T>C;1537C>T
6 human 55027 HEATR3 HEAT repeat containing 3 NM_001329731.2 65.9% 66% 0_1ins693;1195C>T
7 human 55027 HEATR3 HEAT repeat containing 3 XM_017023386.1 65.9% 66% 0_1ins693;1195C>T
8 human 55027 HEATR3 HEAT repeat containing 3 NR_138093.2 43.4% (many diffs)
9 human 55027 HEATR3 HEAT repeat containing 3 NR_138092.2 43.3% (many diffs)
10 mouse 234549 Heatr3 HEAT repeat containing 3 NM_172757.3 84.4% 86.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2109
ORF length:
2040
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggcaagagc cggacgaagc gcttcaagcg acctcagttc tcccctacgg
121gcgactgtca ggccgaggcg gctgcggcgg cgaatgggac cggaggcgag gaggacgacg
181ggccggcggc ggagctgctg gaaaagctcc agcacccgag cgccgaggtc cgcgagtgcg
241cctgcgcagg gctggcccgg ctggtgcagc agcggccggc actcccgggc ctggcgcgac
301gagacgccgt gcgccgcctc gggccgctgc tgctagaccc cagcctggcc gtcagggaga
361ctgcagccgg cgcgctgaga aatctcagtg cttgtggagg ttttgaagtt tgtgatgaca
421tggtgactaa ggatatcatg acccctctgg ttgcgctgct aaaagagtgt agtgctggac
481tggattcaaa tgagatgtct ctgcaggaga aaaaagatca gaacagaaat tctattgaga
541acatagccaa tgagactgtg aacgtgctgt ggaatatatg tgaatgcagt agtagagcag
601tgtctatatt caacaaagaa gggtgtttgg agattgtgtt aaagtattta agtaggttcc
661ctaccaatgt tgacctggct atttcagtag catattgttt gcagacagtg actgaggata
721acccagagct gctgaagtct ttcagtgcta cagcattgaa catgctggaa tcagcactgc
781tttctcctgt cagttccatg gaatctcttc tattgaagac attggtagca ggcacaattt
841ggaatctaaa ggacattatt ccatgcaaga gtcaagcaga aatcataaat gccttactaa
901agatcttatc tgaagttttg ggaatggatg ctggtgaaat ggttattcaa atgaaagagg
961ctgaaacgca aaggttaaaa actgctgcag aggctgagga aatattagag aacactaatg
1021gggatgattt gattgaagat gatgaaatgg aaggaatttc tcataaaaga agagtcagaa
1081ggaaaacttt cgtttcagat ttacttccgc ccactgacaa ggaactgaga gagactatag
1141cattgctgac agcccaacag actgctctgg aaattattgt caacatgtgc tgcaatgaag
1201atccctctga tgacgaatgg gaagagcttt ctagcagtga tgaaagtgac gcatttatgg
1261agaattcctt cagtgagtgc gggggacagc tgttttctcc cctctgcctc tcccatgaag
1321ttcacacggc tctcaccaac tacctcatcc caaagaagat ttttgagaaa actgcctttc
1381caaacagcat tgcagttgac ctatgttcta ggaaccctac ttggaaacct ttgattagaa
1441aaatgaacac tattcagtgc agagccctct tctgtctcca gagtcttgtg tccctcctgg
1501atgtggagca cctgggagga gccgcagccc ttcagacgct tgcacagcat ctgtcacagc
1561tgcttttttc tcaaccagat tttgctaaac atgttgactt tctagaagcc ataagtagtg
1621ctttgagggc ccttttgcaa acaatggcct ccaagaacat ttcccagtgc atgactcctg
1681atcagctgat gacattatgc aaagcaggca ttcatagtag taatgtcggg gttagagtga
1741atgtcgttag cattttagga atcactggca gcgtccttgc caaagaagat ggtacacttg
1801aaactcttaa gaacattggg tgctttctgc ttgaagttac caccaaagat ccttcccttg
1861tggtagcagg agaagctttg gatgccctct ttgatgtttt tgcagatggt aaagaagccg
1921aaagagcctc gattcaaatt aaattattat ctgctttgaa agaattccag ccggtcttta
1981aaatgaagat acgtaaagaa gggagaggta actatagcac agatcagctg tgtgttcttg
2041acaatgtgaa aatgaatttg cgaagattta ttgcttatca agaaactgtt gagaaaagac
2101tgacttcttt gccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
2161tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
2221tcaacctctg gatta

Download FASTA (ORF) (Full)

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