Nucleotide Global Alignment

Description

Query:
ccsbBroad304_08516
Subject:
XR_002957559.1
Aligned Length:
4584
Identities:
2565
Gaps:
2017

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTTTTGTGTGTTAGAGAACGTCGCGGAGGAGGTAAGCGTCGCTTGGCGCCTGGCCGCCGCGGGCAGGATACA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGTGGGCCTGAGGCGCGAGCCCGGCGGCGTGCGGCCCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATCCCTTCTGAAGTTCTATCTGAAAATTGCGCTTAAG  222

Query    1  --------------------------------------------ATGATTGCAACACCTTTGAAACATTCAAGA  30
                                                        ||||||||||||||||||||||||||||||
Sbjct  223  TGAATTTTCTGTTAGAAGAACTTGGTTGCTACTTTCTTGTCAAGATGATTGCAACACCTTTGAAACATTCAAGA  296

Query   31  ATTTACTTACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACCCATGGATGCAATCTTTTTTGACAGCATTCC  104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATTTACTTACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACCCATGGATGCAATCTTTTTTGACAGCATTCC  370

Query  105  TTCAGGCACACTTACTCCTGTAAAAGATTTGGTGAAATATCAGAACTCCTCCTTAAAATTGAATGACCATAAAA  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTCAGGCACACTTACTCCTGTAAAAGATTTGGTGAAATATCAGAACTCCTCCTTAAAATTGAATGACCATAAAA  444

Query  179  AGAATCAGTTCCTAAAAATGACAACTTTTAACAATAAAAATATATTTCAATCAACTATGCTAACAGAGGCTACT  252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGAATCAGTTCCTAAAAATGACAACTTTTAACAATAAAAATATATTTCAATCAACTATGCTAACAGAGGCTACT  518

Query  253  ACCTCTAACAGTTTTCTTGATATCAGTGCTATAAAGCCCAACAAGGATGGATTAAAAAATAAAGCAAACTATGA  326
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACCTCTAACAGTTCTCTTGATATCAGTGCTATAAAGCCCAACAAGGATGGATTAAAAAATAAAGCAAACTATGA  592

Query  327  ATCACCAGGAAAAATATTTCTAAGAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACA  400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATCACCAGGAAAAATATTTCTAAGAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACA  666

Query  401  GTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAACCTTCACTCCTAACAGAGTTGAAAAAAAAAAATTG  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAACCTTCACTCCTAACAGAGTTGAAAAAAAAAAATTG  740

Query  475  CAGCATACCTACCTATGTGAAGAAAAGGAAAACAACAAATCATTCCAGTCAGATGACAGTTCACTAAGAGCCTC  548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGCATACCTACCTATGTGAAGAAAAGGAAAACAACAAATCATTCCAGTCAGATGACAGTTCACTAAGAGCCTC  814

Query  549  AGTCCAAGGAGTTCCTCTAGAATCATCAAATAATGATATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAGC  622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGTCCAAGGAGTTCCTCTAGAATCATCAAATAATGATATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAGC  888

Query  623  AGGAAAAGAAAGCACCACTGCACAATTTAACTTACGAACTTCCAACTCTGAACCAAGAACAGGAAAATTTTTTG  696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGAAAAGAAAGCACCACTGCACAATTTAACTTACGAACTTCCAACTCTGAACCAAGAACAGGAAAATTTTTTG  962

Query  697  GCTGTAGAAGCCCGAAACAAGACATTAACTAGAGCTCAGTTGGCTAAACAAATTTTTCACTCAAAGGAGAGTAT  770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTGTAGAAGCCCGAAACAAGACATTAACTAGAGCTCAGTTGGCTAAACAAATTTTTCACTCAAAGGAGAGTAT  1036

Query  771  AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAAGCGTTGATTCTGCTGATGAACAATTTCAAA  844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAAGCGTTGATTCTGCTGATGAACAATTTCAAA  1110

Query  845  ATACTAATGCTGAGACTCTCAGTACTAATTGTATTCCTATTAAAAATGGCAGCCTGTTAATGGTTTCTGATAGT  918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATACTAATGCTGAGACTCTCAGTACTAATTGTATTCCTATTAAAAATGGCAGCCTGTTAATGGTTTCTGATAGT  1184

Query  919  GAGAGGACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAAGGAAATGGAAAAACAGTGCCTGGAGAGACAGG  992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAGAGGACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAAGGAAATGGAAAAACAGTGCCTGGAGAGACAGG  1258

Query  993  TCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGACTTCATATAACAATACCTCGGA  1066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGACTTCATATAACAATACCTCGGA  1332

Query 1067  GGTCAAAAAGAAATATTTCAAAGCTTTCTCCTCCAAGAATATTTCAAACTGTTACAAATGGACTTAAAAAAAAT  1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGTCAAAAAGAAATATTTCAAAGCTTTCTCCTCCAAGAATATTTCAAACTGTTACAAATGGACTTAAAAAAAAT  1406

Query 1141  CAGGTAGTTCAGCTACAGGAATGGATGATTAAAAGCATCAATAATAATACTGCTATATGTGTAGAAGGAAAATT  1214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGGTAGTTCAGCTACAGGAATGGATGATTAAAAGCATCAATAATAATACTGCTATATGTGTAGAAGGAAAATT  1480

Query 1215  GATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAGAGCGGATTGAGCACAACAAACTTAGGACTA  1288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAGAGCGGATTGAGCACAACAAACTTAGGACTA  1554

Query 1289  TATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATTTCCATGAAAGAAGCAGGATATCCAAATTAT  1362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATTTCCATGAAAGAAGCAGGATATCCAAATTAT  1628

Query 1363  CTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGAGCACATTGATAATTTTCTGGAACAATTAAG  1436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGAGCACATTGATAATTTTCTGGAACAATTAAG  1702

Query 1437  GGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAACTGGAAGATCTGTCCGTGACATAAGGAAAT  1510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAACTGGAAGATCTGTCCGTGACATAAGGAAAT  1776

Query 1511  CAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGT  1584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGT  1850

Query 1585  GATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATTAAACATGTGCCACAGTAA  1658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATTAAACATGTGCCACAGTAA  1924

Query 1659  TTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATG  1732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATG  1998

Query 1733  ACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATGTCTTCAAAGAAACTAAAAATTGGTGAAAGA  1806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATGTCTTCAAAGAAACTAAAAATTGGTGAAAGA  2072

Query 1807  ACAAATGAAAGGATAATAAAAAGTCAGAAGCAAGAGACAACTGAAGAATTGGATGTATCCATTGATATTCTAAC  1880
            |||||||||||||||||||||||||||||||||                                         
Sbjct 2073  ACAAATGAAAGGATAATAAAAAGTCAGAAGCAA-----------------------------------------  2105

Query 1881  CTCAAGGGAACAGTTTTTCTCAGATGAAGAAAGAAAATACATGGCCATCAATCAGAAGAAAGCTTATATTTTAG  1954
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 1955  TAACACCACTTAAATCTAGAAAAGTGATAGAGCAAAGATGCATGAGGTATAATCTGTCCGCTGGCACCATCAAA  2028
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2029  GCAGTAACAGATTTTGTAATACCAGAGTGTCAAAAAAAAAGTCCCATCAGCAAGTCCATGGGGACTTTAGAAAA  2102
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2103  TACATTTGAAGGTCATAAAAGTAAAAACAAGGAAGATTGCGATGAACGTGACTTACTTACTGTCAACCGGAAAA  2176
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2177  TAAAAATATCTAACCTTGAAAAGGAACAAATGCTCACCTCTGACTTTAAGAAAAATACCAGACTATTACCAAAA  2250
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2251  TTGAAGAAAATAGAAAATCAGGTAGCTATGTCATTTTATAAGCATCAGTCCTCACCAGATTTGTCAAGTGAAGA  2324
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2325  AAGTGAAACAGAAAAGGAAATTAAAAGGAAAGCTGAAGTTAAGAAAACCAAAGCAGGAAACACCAAAGAAGCAG  2398
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2399  TGGTTCACCTGAGAAAGAGCACAAGAAACACAAGTAATATTCCAGTGATTTTGGAACCTGAAACTGAAGAAAGT  2472
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2473  GAAAATGAATTTTATATCAAACAAAAGAAAGCTAGACCTTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAG  2546
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2547  GAAAGAGTTTCCAATTACTGAGGCAGTAGGATCTGATAAGACAAATAGGCATCCCTTAGAATGCTTACCTGGTT  2620
                                                                                      
Sbjct 2106  --------------------------------------------------------------------------  2105

Query 2621  TAATTCAGGATAAGGAATGGAATGAGAAGGAGTTACAGAAACTTCATTGTGCTTTTGCATCTCTTCCAAAGCAC  2694
                                                            ||||||||||||||||||||||||||
Sbjct 2106  ------------------------------------------------GTGCTTTTGCATCTCTTCCAAAGCAC  2131

Query 2695  AAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCGATCTCCTGAAGAATGCCAGAAGAAATACAT  2768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2132  AAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCGATCTCCTGAAGAATGCCAGAGGAAATACAT  2205

Query 2769  GGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAATG  2842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206  GGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAATG  2279

Query 2843  GCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAAAGGAAGCAA  2916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280  GCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAAAGGAAGCAA  2353

Query 2917  CAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGATGATTTTTTCAGTACAACACCTTTACAGCA  2990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354  CAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGATGATTTTTTCAGTACAACACCTTTACAGCA  2427

Query 2991  TCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATGATGATATTCTGCCAAATATGGACAAAAATC  3064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428  TCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATGATGATATTCTGCCAAATATGGACAAAAATC  2501

Query 3065  CAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCTCAATGTCAGCATGTCAGTCCTGGCATGCTA  3138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502  CAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCTCAATGTCAGCATGTCAGTCCTGGCATGCTA  2575

Query 3139  GGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTATGCAAAAATATCATAAAAGTAATGGTGGTAT  3212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576  GGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTATGCAAAAATATCATAAAAGTAATGGTGGTAT  2649

Query 3213  TGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCTCAACTCCAACACCAAGAAGGAAAACCCCAT  3286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650  TGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCTCAACTCCAACACCAAGAAGGAAAACCCCAT  2723

Query 3287  TTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTCACTAATGCTGTGGAATCTTTAGATGAAGAA  3360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724  TTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTCACTAATGCTGTGGAATCTTTAGATGAAGAA  2797

Query 3361  GAGAAAGATTATTATTTTTCGAACTCTGATTCTGCA--------------------------------------  3396
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 2798  GAGAAAGATTATTATTTTTCGAACTCTGATTCTGCATAGTAAAATGAGAAAATATGATTCCTGGGATTTTTACC  2871

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 2872  ATAAAGCAGACAGTGTTTGTATTTTCAACTGGAGTACATGTATTTTCTTTGTAAAGTAGCTTCCTATGAAAATG  2945

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 2946  TGGACTTTTTTGAAGGTTTCATATGTTTGTGTTCAAAGTAAAATATCCTCATTGCTGCAGCTTACTAAAAATGT  3019

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3020  AAAGAAAATTGTTTTTGCTCGTGTAGATATCTGTAAATTTGTTTTTGCATATTAAAATATATATAGATAATTTT  3093

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3094  TTAATAAGCATCCAAGTCTGTTTACTTTAAGAAAACCATTTCCCAAACAGATTTTTTTTTATTTCAAGAAAATT  3167

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3168  TTGCTACCATTTAAGTAAGAGAAGGTGAGAAGGATGACAGAGGTTGTATTGGTAGCTATTGAATTCATGAAAAC  3241

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3242  TTTTAAGTTAGCATTTGTTAGCAGTTATTATCCAAGCCAGAGTAGGATTTGTTACCAGTTGTTATCCAAACCTA  3315

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3316  ATGTTTAAATTACACATTGTTGAAATTAAATTACACATTGTTGACATGCTTCTCTCCTGATTGTTTTTATTTTA  3389

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3390  AACTTGTGATAGGCATATCTATGAAACCTTTGTAAATTTAGTTTATTGCTTTACCATTATTTTACTAGGTAAAA  3463

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3464  TTAGAGAACAGATTTTGTTCTCTAATTTTTAAGCCTTATTTACATATGCAGAAACAGCTTAAATATTTTGACTA  3537

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3538  GATTAGACAAACAGTTAATAGATCCACCATTAGGAATCAATATATTATGTCATAATAAACATCCTTTTTCTTTC  3611

Query 3397  --------------------------------------------------------------------------  3396
                                                                                      
Sbjct 3612  ACTGAAATTTCTTTTAGAAATAAACTTATTTTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTC  3685

Query 3397  ----------------------------------------------------------------------  3396
                                                                                  
Sbjct 3686  TGGCTACACATTCACCTACCCTTGTTCTCTATTTAGATTATTCAAATAAAGTTAGTTTGCTTTTATAGTA  3755

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