Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08516
- Subject:
- XR_002957559.1
- Aligned Length:
- 4584
- Identities:
- 2565
- Gaps:
- 2017
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTTTTGTGTGTTAGAGAACGTCGCGGAGGAGGTAAGCGTCGCTTGGCGCCTGGCCGCCGCGGGCAGGATACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGTGGGCCTGAGGCGCGAGCCCGGCGGCGTGCGGCCCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATCCCTTCTGAAGTTCTATCTGAAAATTGCGCTTAAG 222
Query 1 --------------------------------------------ATGATTGCAACACCTTTGAAACATTCAAGA 30
||||||||||||||||||||||||||||||
Sbjct 223 TGAATTTTCTGTTAGAAGAACTTGGTTGCTACTTTCTTGTCAAGATGATTGCAACACCTTTGAAACATTCAAGA 296
Query 31 ATTTACTTACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACCCATGGATGCAATCTTTTTTGACAGCATTCC 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTTACTTACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACCCATGGATGCAATCTTTTTTGACAGCATTCC 370
Query 105 TTCAGGCACACTTACTCCTGTAAAAGATTTGGTGAAATATCAGAACTCCTCCTTAAAATTGAATGACCATAAAA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCAGGCACACTTACTCCTGTAAAAGATTTGGTGAAATATCAGAACTCCTCCTTAAAATTGAATGACCATAAAA 444
Query 179 AGAATCAGTTCCTAAAAATGACAACTTTTAACAATAAAAATATATTTCAATCAACTATGCTAACAGAGGCTACT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAATCAGTTCCTAAAAATGACAACTTTTAACAATAAAAATATATTTCAATCAACTATGCTAACAGAGGCTACT 518
Query 253 ACCTCTAACAGTTTTCTTGATATCAGTGCTATAAAGCCCAACAAGGATGGATTAAAAAATAAAGCAAACTATGA 326
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACCTCTAACAGTTCTCTTGATATCAGTGCTATAAAGCCCAACAAGGATGGATTAAAAAATAAAGCAAACTATGA 592
Query 327 ATCACCAGGAAAAATATTTCTAAGAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCACCAGGAAAAATATTTCTAAGAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACA 666
Query 401 GTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAACCTTCACTCCTAACAGAGTTGAAAAAAAAAAATTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAACCTTCACTCCTAACAGAGTTGAAAAAAAAAAATTG 740
Query 475 CAGCATACCTACCTATGTGAAGAAAAGGAAAACAACAAATCATTCCAGTCAGATGACAGTTCACTAAGAGCCTC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGCATACCTACCTATGTGAAGAAAAGGAAAACAACAAATCATTCCAGTCAGATGACAGTTCACTAAGAGCCTC 814
Query 549 AGTCCAAGGAGTTCCTCTAGAATCATCAAATAATGATATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAGC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGTCCAAGGAGTTCCTCTAGAATCATCAAATAATGATATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAGC 888
Query 623 AGGAAAAGAAAGCACCACTGCACAATTTAACTTACGAACTTCCAACTCTGAACCAAGAACAGGAAAATTTTTTG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGGAAAAGAAAGCACCACTGCACAATTTAACTTACGAACTTCCAACTCTGAACCAAGAACAGGAAAATTTTTTG 962
Query 697 GCTGTAGAAGCCCGAAACAAGACATTAACTAGAGCTCAGTTGGCTAAACAAATTTTTCACTCAAAGGAGAGTAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCTGTAGAAGCCCGAAACAAGACATTAACTAGAGCTCAGTTGGCTAAACAAATTTTTCACTCAAAGGAGAGTAT 1036
Query 771 AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAAGCGTTGATTCTGCTGATGAACAATTTCAAA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAAGCGTTGATTCTGCTGATGAACAATTTCAAA 1110
Query 845 ATACTAATGCTGAGACTCTCAGTACTAATTGTATTCCTATTAAAAATGGCAGCCTGTTAATGGTTTCTGATAGT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATACTAATGCTGAGACTCTCAGTACTAATTGTATTCCTATTAAAAATGGCAGCCTGTTAATGGTTTCTGATAGT 1184
Query 919 GAGAGGACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAAGGAAATGGAAAAACAGTGCCTGGAGAGACAGG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGAGGACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAAGGAAATGGAAAAACAGTGCCTGGAGAGACAGG 1258
Query 993 TCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGACTTCATATAACAATACCTCGGA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGACTTCATATAACAATACCTCGGA 1332
Query 1067 GGTCAAAAAGAAATATTTCAAAGCTTTCTCCTCCAAGAATATTTCAAACTGTTACAAATGGACTTAAAAAAAAT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGTCAAAAAGAAATATTTCAAAGCTTTCTCCTCCAAGAATATTTCAAACTGTTACAAATGGACTTAAAAAAAAT 1406
Query 1141 CAGGTAGTTCAGCTACAGGAATGGATGATTAAAAGCATCAATAATAATACTGCTATATGTGTAGAAGGAAAATT 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAGGTAGTTCAGCTACAGGAATGGATGATTAAAAGCATCAATAATAATACTGCTATATGTGTAGAAGGAAAATT 1480
Query 1215 GATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAGAGCGGATTGAGCACAACAAACTTAGGACTA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GATAGACGTCACTAACATATATTGGCACAGTAATGTAATTATAGAGCGGATTGAGCACAACAAACTTAGGACTA 1554
Query 1289 TATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATTTCCATGAAAGAAGCAGGATATCCAAATTAT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TATCAGGCAACGTTTATATATTAAAAGGCATGATAGACCAAATTTCCATGAAAGAAGCAGGATATCCAAATTAT 1628
Query 1363 CTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGAGCACATTGATAATTTTCTGGAACAATTAAG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTCATAAGGAAATTTATGTTTGGATTTCCAGAAAATTGGAAAGAGCACATTGATAATTTTCTGGAACAATTAAG 1702
Query 1437 GGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAACTGGAAGATCTGTCCGTGACATAAGGAAAT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GGCTGGTGAAAAGAACAGGGAAAAGACCAAACAAAAACAGAAAACTGGAAGATCTGTCCGTGACATAAGGAAAT 1776
Query 1511 CAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGT 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CAATGAAAAATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGT 1850
Query 1585 GATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATTAAACATGTGCCACAGTAA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATTAAACATGTGCCACAGTAA 1924
Query 1659 TTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTGCCAAAATAAACCAACATTAAGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATG 1998
Query 1733 ACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATGTCTTCAAAGAAACTAAAAATTGGTGAAAGA 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ACTTATCTAATCAGGAATTAATTGGAAAAAAAGAATATAAAATGTCTTCAAAGAAACTAAAAATTGGTGAAAGA 2072
Query 1807 ACAAATGAAAGGATAATAAAAAGTCAGAAGCAAGAGACAACTGAAGAATTGGATGTATCCATTGATATTCTAAC 1880
|||||||||||||||||||||||||||||||||
Sbjct 2073 ACAAATGAAAGGATAATAAAAAGTCAGAAGCAA----------------------------------------- 2105
Query 1881 CTCAAGGGAACAGTTTTTCTCAGATGAAGAAAGAAAATACATGGCCATCAATCAGAAGAAAGCTTATATTTTAG 1954
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 1955 TAACACCACTTAAATCTAGAAAAGTGATAGAGCAAAGATGCATGAGGTATAATCTGTCCGCTGGCACCATCAAA 2028
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2029 GCAGTAACAGATTTTGTAATACCAGAGTGTCAAAAAAAAAGTCCCATCAGCAAGTCCATGGGGACTTTAGAAAA 2102
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2103 TACATTTGAAGGTCATAAAAGTAAAAACAAGGAAGATTGCGATGAACGTGACTTACTTACTGTCAACCGGAAAA 2176
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2177 TAAAAATATCTAACCTTGAAAAGGAACAAATGCTCACCTCTGACTTTAAGAAAAATACCAGACTATTACCAAAA 2250
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2251 TTGAAGAAAATAGAAAATCAGGTAGCTATGTCATTTTATAAGCATCAGTCCTCACCAGATTTGTCAAGTGAAGA 2324
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2325 AAGTGAAACAGAAAAGGAAATTAAAAGGAAAGCTGAAGTTAAGAAAACCAAAGCAGGAAACACCAAAGAAGCAG 2398
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2399 TGGTTCACCTGAGAAAGAGCACAAGAAACACAAGTAATATTCCAGTGATTTTGGAACCTGAAACTGAAGAAAGT 2472
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2473 GAAAATGAATTTTATATCAAACAAAAGAAAGCTAGACCTTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAG 2546
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2547 GAAAGAGTTTCCAATTACTGAGGCAGTAGGATCTGATAAGACAAATAGGCATCCCTTAGAATGCTTACCTGGTT 2620
Sbjct 2106 -------------------------------------------------------------------------- 2105
Query 2621 TAATTCAGGATAAGGAATGGAATGAGAAGGAGTTACAGAAACTTCATTGTGCTTTTGCATCTCTTCCAAAGCAC 2694
||||||||||||||||||||||||||
Sbjct 2106 ------------------------------------------------GTGCTTTTGCATCTCTTCCAAAGCAC 2131
Query 2695 AAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCGATCTCCTGAAGAATGCCAGAAGAAATACAT 2768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2132 AAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCTGTAGGTTCTCGATCTCCTGAAGAATGCCAGAGGAAATACAT 2205
Query 2769 GGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAATG 2842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 GGAAAATCCCAGAGGAAAAGGATCCCAGAAACATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAATG 2279
Query 2843 GCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAAAGGAAGCAA 2916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 GCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAAAGGAAGCAA 2353
Query 2917 CAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGATGATTTTTTCAGTACAACACCTTTACAGCA 2990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354 CAGATGAGGGAATTTCTGGAACAGTTGCCAAAAGATGACCATGATGATTTTTTCAGTACAACACCTTTACAGCA 2427
Query 2991 TCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATGATGATATTCTGCCAAATATGGACAAAAATC 3064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428 TCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGATGATGATATTCTGCCAAATATGGACAAAAATC 2501
Query 3065 CAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCTCAATGTCAGCATGTCAGTCCTGGCATGCTA 3138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 CAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAACTCCTCAATGTCAGCATGTCAGTCCTGGCATGCTA 2575
Query 3139 GGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTATGCAAAAATATCATAAAAGTAATGGTGGTAT 3212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 GGTTCTATAAATAGGAATGACTGTGATAAATATGTTTTTCGTATGCAAAAATATCATAAAAGTAATGGTGGTAT 2649
Query 3213 TGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCTCAACTCCAACACCAAGAAGGAAAACCCCAT 3286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 TGTCTGGGGCAACATCAAGAAAAAATTAGTTGAAACTGATTTCTCAACTCCAACACCAAGAAGGAAAACCCCAT 2723
Query 3287 TTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTCACTAATGCTGTGGAATCTTTAGATGAAGAA 3360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724 TTAACACAGACTTAGGAGAAAACTCTGGTATTGGAAAACTTTTCACTAATGCTGTGGAATCTTTAGATGAAGAA 2797
Query 3361 GAGAAAGATTATTATTTTTCGAACTCTGATTCTGCA-------------------------------------- 3396
||||||||||||||||||||||||||||||||||||
Sbjct 2798 GAGAAAGATTATTATTTTTCGAACTCTGATTCTGCATAGTAAAATGAGAAAATATGATTCCTGGGATTTTTACC 2871
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 2872 ATAAAGCAGACAGTGTTTGTATTTTCAACTGGAGTACATGTATTTTCTTTGTAAAGTAGCTTCCTATGAAAATG 2945
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 2946 TGGACTTTTTTGAAGGTTTCATATGTTTGTGTTCAAAGTAAAATATCCTCATTGCTGCAGCTTACTAAAAATGT 3019
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3020 AAAGAAAATTGTTTTTGCTCGTGTAGATATCTGTAAATTTGTTTTTGCATATTAAAATATATATAGATAATTTT 3093
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3094 TTAATAAGCATCCAAGTCTGTTTACTTTAAGAAAACCATTTCCCAAACAGATTTTTTTTTATTTCAAGAAAATT 3167
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3168 TTGCTACCATTTAAGTAAGAGAAGGTGAGAAGGATGACAGAGGTTGTATTGGTAGCTATTGAATTCATGAAAAC 3241
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3242 TTTTAAGTTAGCATTTGTTAGCAGTTATTATCCAAGCCAGAGTAGGATTTGTTACCAGTTGTTATCCAAACCTA 3315
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3316 ATGTTTAAATTACACATTGTTGAAATTAAATTACACATTGTTGACATGCTTCTCTCCTGATTGTTTTTATTTTA 3389
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3390 AACTTGTGATAGGCATATCTATGAAACCTTTGTAAATTTAGTTTATTGCTTTACCATTATTTTACTAGGTAAAA 3463
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3464 TTAGAGAACAGATTTTGTTCTCTAATTTTTAAGCCTTATTTACATATGCAGAAACAGCTTAAATATTTTGACTA 3537
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3538 GATTAGACAAACAGTTAATAGATCCACCATTAGGAATCAATATATTATGTCATAATAAACATCCTTTTTCTTTC 3611
Query 3397 -------------------------------------------------------------------------- 3396
Sbjct 3612 ACTGAAATTTCTTTTAGAAATAAACTTATTTTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTC 3685
Query 3397 ---------------------------------------------------------------------- 3396
Sbjct 3686 TGGCTACACATTCACCTACCCTTGTTCTCTATTTAGATTATTCAAATAAAGTTAGTTTGCTTTTATAGTA 3755