Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08729
- Subject:
- XR_881068.2
- Aligned Length:
- 4853
- Identities:
- 1815
- Gaps:
- 2727
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAGCCGGAGGGCGGGGCGCAGGAGGGGCTCCACGGTGCCCAGCCAGGCAGCAACCCGCAGGGCTGTGGCTGAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAACTCCTGCTAGCGTAGAAAGATCAGCCGGAGGACCCTTCTCCCTTTCTTCCGTGTGGCGGTCACTGAGACTT 148
Query 1 ----------------------------------------------------------ATGCTCCAGATCCCTC 16
|||..|||||.||.||
Sbjct 149 CAGCCTGACAGATTCAGATGGGCCCCGGAGTGGTGGTTCCTTCCTTCGCTAGGAACTGATGTCCCAGAACCTTC 222
Query 17 AGGAGAAGAGCCAGGCCTACCCCCGCCGCCGCCGGCCTGGCTGCTACGCATACC------GTCAGAA------- 77
||||||..|||||||||||||| |||.|..||.|||||..||.|||||..|| |||..||
Sbjct 223 AGGAGACAAGCCAGGCCTACCC---CCGACATCGACCTGGTAGCCACGCAGGCCCTAAAAGTCTCAAAGTTACC 293
Query 78 CCCCGAGGCCATCGCAGCCGCAGCTATGTACACCTTCCTGCCCGACAACTTCTCACCTGCCAAGCCCAAGCCTT 151
||.||| |||.|.||||||||.||||||||.|||||.||.|||||||||||.||||||||..
Sbjct 294 CCACGA-------------GCAACCATGTACACTTTCCTGCCTGACAATTTTTCACCTGCCAAACCCAAGCCCA 354
Query 152 CCAAAGAGCTGAAGCCGCTGCTGGGCTCCGCGGTTCTGGGGCTGCTGCTTGTGCTGGCCGCGGTGGTGGCCTGG 225
|.||||||||||..||.||||||.||||||||||.|||||.|||||.||.|||.|||||||.||.|||||||||
Sbjct 355 CTAAAGAGCTGAGACCTCTGCTGTGCTCCGCGGTACTGGGACTGCTACTGGTGTTGGCCGCAGTTGTGGCCTGG 428
Query 226 TGCTACTACAGCGTCTCCCTACGCAAGGCGGAGCGACTTCGCGCGGAGCTGCTGGACCTGAAAGCTGGCGGCTT 299
|||||||||||.|.||||||||||||.||.||.||.||.|||||||||||||||||||||||...|||||||||
Sbjct 429 TGCTACTACAGTGCCTCCCTACGCAAAGCTGAACGCCTGCGCGCGGAGCTGCTGGACCTGAACCGTGGCGGCTT 502
Query 300 CTCCATCCGCAATCAGAAGGGAGAGCAGGTCTTCCGCCTGGCCTTCCGCTCCGGCGCGCTGGACCTTGACTCCT 373
|||||||||.||.||||||||.|||||.|||||||||.||||||||||.|||||.||.||.|||||||||||||
Sbjct 503 CTCCATCCGTAACCAGAAGGGTGAGCAAGTCTTCCGCTTGGCCTTCCGTTCCGGTGCTCTAGACCTTGACTCCT 576
Query 374 GCAGCCGCGATGGCGCCCTGCTGGGCTGCTCGCTCACGGCCGACGGGCTGCCGCTGCACTTCTTCATCCAGACT 447
|||||||.|||||.||.|||||.||||||||.|...||||||||||.|..|||.||||||||||.||.|||||.
Sbjct 577 GCAGCCGGGATGGTGCGCTGCTTGGCTGCTCCCGAGCGGCCGACGGACGCCCGTTGCACTTCTTTATTCAGACA 650
Query 448 GTGCGGCCCAAGGACACGGTCATGTGCTACCGCGTGCGCTGGGAGGAGGCAGCGCCGGGCCGGGCCGTGGAGCA 521
||.||.||.||||||||.||.||||||||||||||||||||||||||.||.|.|||.||.||.||.||||||||
Sbjct 651 GTACGACCTAAGGACACTGTAATGTGCTACCGCGTGCGCTGGGAGGAAGCTGTGCCAGGGCGTGCTGTGGAGCA 724
Query 522 CGCCATGTTCTTGGGCGACGCGGCGGCCCACTGGTATGGTGGCGCCGAGATGAGGACGCAACACTGGCCCATCC 595
|||.|||||..||||.||.||.|||||.|||||||||||.|||||.||||||||||||||||||||||||||||
Sbjct 725 CGCGATGTTTCTGGGAGATGCTGCGGCGCACTGGTATGGCGGCGCAGAGATGAGGACGCAACACTGGCCCATCC 798
Query 596 GCCTGGATGGCCAGCAGGAGCCCCAGCCGTTCGTCACCAGCGATGTCTACTCCTCCGACGCCGCGTTTGGGGGC 669
||||.|||||||||||.||.||.|||||.||.|||||.|||||.|||||.||.||.||||||||.||.||||||
Sbjct 799 GCCTAGATGGCCAGCAAGAACCGCAGCCATTTGTCACGAGCGACGTCTATTCATCTGACGCCGCATTCGGGGGC 872
Query 670 ATCCTCGAGCGCTACTGGCTATCTTCGCGCGCGGCCGCCATCAAAGTCAATGACTCAGTGCCCTTCCACCTGGG 743
|||||.||||||||||||.|||||||.|||||.||.|||||||||||||||||.||||||||||||||||||||
Sbjct 873 ATCCTTGAGCGCTACTGGTTATCTTCACGCGCCGCTGCCATCAAAGTCAATGATTCAGTGCCCTTCCACCTGGG 946
Query 744 CTGGAACAGCACGGAGCGCTCGCTGCGGCTTCAGGCGCGCTACCACGACACGCCCTACAAGCCACCCGCCGGCC 817
||||||.|||||||||||.|||.||.|.||.|||||.||||||||||||||..|.|||||||||||.||.||||
Sbjct 947 CTGGAATAGCACGGAGCGTTCGATGAGACTGCAGGCACGCTACCACGACACATCTTACAAGCCACCAGCTGGCC 1020
Query 818 GCGCCGCAGCGCCAGAGCTGAGCTACCGAGTGTGCGTGGGCTCAGACGTCACCTCCATCCACAAGTACATGGTG 891
|..|.||.|||||||||||.||||||||.|||||||||||||||||.|||||.||||||||||||||||||||.
Sbjct 1021 GTACTGCCGCGCCAGAGCTCAGCTACCGCGTGTGCGTGGGCTCAGATGTCACTTCCATCCACAAGTACATGGTT 1094
Query 892 CGTCGCTACTTCAACAAGCCGTCAAGGGTGCCAGCACCCGAGGCCTTCCGAGACCCCATTTGGTCCACATGGGC 965
||.||.||||||||||||||.||.|||||.|||||..|.|||||||||||||||||||||||||||||.|||||
Sbjct 1095 CGACGTTACTTCAACAAGCCATCCAGGGTACCAGCGTCAGAGGCCTTCCGAGACCCCATTTGGTCCACGTGGGC 1168
Query 966 GCTGTACGGGCGCGCCGTGGACCAGGACAAGGTGCTGCGTTTTGCCCAACAGATCCGCCTGCACCACTTCAACA 1039
.|||.|.||||||||.|||||||||.||||||||||||..||.|||||.||||||||||.|||||.|||.||.|
Sbjct 1169 ACTGCATGGGCGCGCTGTGGACCAGAACAAGGTGCTGCAATTCGCCCAGCAGATCCGCCAGCACCGCTTTAATA 1242
Query 1040 GCAGCCACCTGGAAATCGACGACATGTACACACCTGCTTATGGCGACTTCGACTTCGATGAGGTCAAATTCCCC 1113
|||||||||||||||||||.|||||||||||.||.||.|||||||||||..|.|||||.||||.|||.||.|||
Sbjct 1243 GCAGCCACCTGGAAATCGATGACATGTACACGCCCGCCTATGGCGACTTTAATTTCGACGAGGGCAAGTTTCCC 1316
Query 1114 AACGCCAGCGACATGTTCCGCCGCCTGCGCGACGCCGGCTTCCGCGTCACGCTCTGGGTGCACCCTTTTGTCAA 1187
||||||||.||||||||||||||||||||.||.|||||||||||||||||.||.||||||||.||.||||||||
Sbjct 1317 AACGCCAGTGACATGTTCCGCCGCCTGCGAGATGCCGGCTTCCGCGTCACACTTTGGGTGCATCCGTTTGTCAA 1390
Query 1188 CTACAACTCGTCGCGCTTCGGCGAGGGCGTGGAGCGCGAGCTGTTCGTGCGCGAACCCACGGGCCGGTTACCTG 1261
|||.|||||||||.||||||||||.||.||||||||||||||||||||||||||.||||||||||||.|.||.|
Sbjct 1391 CTATAACTCGTCGAGCTTCGGCGAAGGTGTGGAGCGCGAGCTGTTCGTGCGCGAGCCCACGGGCCGGCTGCCCG 1464
Query 1262 CGCTGGTGCGCTGGTGGAACGGCATCGGCGCGGTGCTAGACTTCACGCACCCAAAGGCCCGCGACTGGTTCCAG 1335
||||||||||||||||||||||.||.|||||.|||||.|||||||||||||||.|||||||.||.|||||||||
Sbjct 1465 CGCTGGTGCGCTGGTGGAACGGTATTGGCGCAGTGCTGGACTTCACGCACCCAGAGGCCCGAGAGTGGTTCCAG 1538
Query 1336 GGACACCTGCGGCGGCTGCGCTCTCGCTACTCCGTGGCTTCCTTCAAGTTCGACGCGGGCGAGGTCAGCTACCT 1409
||||||||.|||||.|||||||..||||||..||||.|.|||||.||||||||||||||.||||||||||||||
Sbjct 1539 GGACACCTACGGCGCCTGCGCTTGCGCTACAACGTGACCTCCTTTAAGTTCGACGCGGGTGAGGTCAGCTACCT 1612
Query 1410 GCCGCGGGACTTCAGCACCTACCGGCCGCTGCCGGACCCCAGCGTCTGGAGCCGGCGCTACACTGAGATGGCGC 1483
|||..|||||||||||||||||.||||.|||.|.||||||||.||.||||||.||||.|||||.|||||||||.
Sbjct 1613 GCCCAGGGACTTCAGCACCTACAGGCCTCTGTCTGACCCCAGTGTGTGGAGCAGGCGGTACACCGAGATGGCGG 1686
Query 1484 TGCCCTTCTTCTCGCTGGCGGAGGTGCGCGTAGGCTACCAGTCACAGAACATCTCCTGCTTCTTCCGCCTGGTG 1557
.|||||||||||||||.||.|||||.|||||.||.||||||||||||||||||||||||||||||||.||.|||
Sbjct 1687 AGCCCTTCTTCTCGCTAGCCGAGGTCCGCGTGGGGTACCAGTCACAGAACATCTCCTGCTTCTTCCGTCTAGTG 1760
Query 1558 GATCGCGACTCTGTGTGGGGCTACGACCTGGGGTTGCGCTCACTCATCCCCGCGGTGCTCACCGTCAGCATGCT 1631
||.||||||||.||.||||||||||||||||||.|||||||.||.|||||.|||||||||||||||||.|||||
Sbjct 1761 GACCGCGACTCGGTATGGGGCTACGACCTGGGGCTGCGCTCTCTTATCCCTGCGGTGCTCACCGTCAGTATGCT 1834
Query 1632 GGGCTACCCATTCATCCTACCCGATATGGTGGGCGGCAACGCCGTGCCCCAGCGGACAGCCGGCGGC---GAT- 1701
||||||.||.||||||.|.|||||||||.|.||.||||||||.|||||..||||.|||||||||.|| |||
Sbjct 1835 GGGCTATCCGTTCATCTTGCCCGATATGATAGGTGGCAACGCGGTGCCGGAGCGCACAGCCGGCCGCCAAGATG 1908
Query 1702 -----GTGCCCGAGCGCGAGCTCTACATTCGCTGGCTGGAAGTGGCCGCCTTTATGCCGGCCATGCAGTTCTCT 1770
|.|||.|||||||||||||||.|.|||||||||||.|||||||||||.|||||.|||||||||||.||.
Sbjct 1909 GGCCGGGGCCAGAGCGCGAGCTCTACGTGCGCTGGCTGGAGGTGGCCGCCTTCATGCCTGCCATGCAGTTTTCA 1982
Query 1771 ATCCCGCCCTGGCGCTACGACGCGGAAGTGGTGGCCATCGCGCAGAAGTTCGCCGCCCTGCGGGCCTCGCTTGT 1844
|||||.||.||||..||||||||.||||||||.||||||||.||.||.|||||.||.|||||.|||||.||.||
Sbjct 1983 ATCCCTCCTTGGCAGTACGACGCAGAAGTGGTAGCCATCGCACACAAATTCGCTGCTCTGCGCGCCTCCCTCGT 2056
Query 1845 GGCACCGCTGTTGCTTGAGCTGGCGGGCGAGGTCACCGACACGGGTGACCCTATCGTGCGCCCCCTTTGGTGGA 1918
|||.||.|||.||||.|||||.||.||.|||.||||||||||.||.|||||.||||||||||||||.|||||||
Sbjct 2057 GGCGCCACTGCTGCTAGAGCTTGCTGGTGAGATCACCGACACTGGCGACCCCATCGTGCGCCCCCTGTGGTGGA 2130
Query 1919 TTGCGCCCGGCGACGAGACAGCTCACCGTATCGACTCGCAGTTCCTTATTGGGGACACGCTGCTTGTGGCCCCG 1992
|.||.||.||.||.||.||.||.||.||.||.|||||.|||||.||.||.||||||||||||.|.|||||.|||
Sbjct 2131 TCGCACCGGGGGATGAAACGGCCCATCGCATTGACTCACAGTTTCTCATCGGGGACACGCTGTTGGTGGCGCCG 2204
Query 1993 GTGCTGGAGCCAGGCAAGCAGGAGCGCGACGTCTATTTGCCCGCCGGCAAGTGGCGCAGCTACAAGGGTGAGCT 2066
|||||.|||||.||.|||||.|||||.||.|||||..||||.||||||||.|||||.||||||||||||||.||
Sbjct 2205 GTGCTAGAGCCTGGTAAGCAAGAGCGTGATGTCTACCTGCCTGCCGGCAAATGGCGAAGCTACAAGGGTGAACT 2278
Query 2067 TTTCGACAAGACGCCGGTGCTGCTCACCGATTACCCGGTCGACCTGGATGAGATCGCCTACTTTACCTGGGCGT 2140
|||.|||||||||||||||||||||||.||||||||.|||||||||||||||.|||||||.||.||||||||.|
Sbjct 2279 TTTTGACAAGACGCCGGTGCTGCTCACGGATTACCCTGTCGACCTGGATGAGGTCGCCTATTTCACCTGGGCTT 2352
Query 2141 CC------------------------------------------------------------------------ 2142
||
Sbjct 2353 CCTGACCCAGCTCAGAACCTAGGAATCCCACAGCCCTAACCCCAGCCTTCATACAGACTTTTAATCCTCTACCA 2426
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2427 CATGCGAATGCTGAACCCTCAGGAAGACCCACCTCTATACCATCTAGGAAGTGGGCACTGACTTTAAAGCGCTC 2500
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2501 CAGCCAACAGCTGTAGATCCTCAGGTATATCTAAGTATATGAAGAGCATTTGAAGAAACGCTGCCTTCTGTTCT 2574
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2575 GGGAACAACTGTACAACTATCCCCTGCCAAGGACAGGTGTGCTCAGACTTAGCCTTGAAGAAAAATGCAATGGC 2648
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2649 AGCTGGGTGGTTGCCTTTCCTTCCATTGTTTGGCTCCAAGGGCTTCTGCTGACAACCCCTACAGGTTACACCCC 2722
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2723 AACTCCCAAGGCACAGCCTGATTTTTTTTTTTTTTTTTTATCTTAAAGGTAATCATTTACTTCAGCAAGCCCCA 2796
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2797 GGATCTCTCCAGCAGCTTGATAAGAGGGGAGCTATTTAACTTTAGGTGGCAAGCCCCAAGCTTGCTCCAAGCAG 2870
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2871 CATTGGAGGGGATACGAAAAGACTCAGAGGACAGCCCTGTTCCTGTGTGTTCCCAGTCTAGAGGTCAGGGACTC 2944
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 2945 TGTGGTTTTGGACAGCTCTTTGGCTTTCCCACTCCAGGTTACACAATCCAGAGCAGGGGAGAGTTATGGAGCAG 3018
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3019 TCTGAGCTCTGCCTGCCTACCTATACCATGGCCTCCTTAAGGAAGCAGCAGGAGGAAGCTGGCACCACCCTCCA 3092
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3093 GCCCCTCAGAGAATTAGGTCAGGCCAAAGGCTAAGATGACTGGAGAGTACGGTCTGTATGGTTGTGAGGGCTGC 3166
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3167 ACCATAGGCACCAGCCCTGCATAGGAATGTCTATTCTAACGTTACTTGAGGTCTTCAATAAATGGCTTCTGTGT 3240
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3241 AGAAATAAGTCATTGTTTTCAAGGTCAAGAGGACATTTGGATTTCTTAGGACCTCTGAAAGGAAAACTTAGGCC 3314
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3315 TCCCCTGTAGGGGTAAGTCTGTCAGCCGCCTCCTCACCCTAAGAAGAGGAGGTAGCATAGAGCAAATGGGCAAC 3388
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3389 TCCAGAAGGAGGTCCTTTGGGTCCTGGCAGGAAATAGGATGGATGGTTATTGGCGAGAGATGCTTTCCCACTTC 3462
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3463 TCGGCCCTTCGATAGGTAAAACCACGTTTGGAAACCAGGAAGCAAGCCGCCCTTCTCCACTGCCTCGGGCATTT 3536
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3537 ATCCAGTCACCTAGCAGGTGTCTGCCTGCAGGCCAAGAGAAAAGGTGTGTCATTCCATGAATGTTCTTTGTGTG 3610
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3611 TGAGATATGGAAAGACATTGTGGTCATTTTCTAAACTTTGGATCAGGCCCCAGTCCCATTTGTTTGTGACCAGG 3684
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3685 GGGTTGAGTCTATCCCACTTAGGGTACATACTCCCCCTTTCCTGGCCAGGGCCTGAGATTAGCTTTTCAATCCT 3758
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3759 GCCATGTTTAAACTCTTCTCTTAGATACTTTGTTGGGTTGTGCCCTGAGTCTGATCACCCATGGCTCTGCCTGG 3832
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3833 ACCCTGCTTGTCCCCAAGCATGGTTTGGAAACTAGAACAGAATTTTATGGCCCCTGTGCAGTTGTGAGGCTTGG 3906
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3907 CATGCCCACCTTAAAACATGATTTTATCAAACCATGCATTTTTTTGTATACATTTCTCAGAAAAACAAAAGGAA 3980
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 3981 AAATTCAACTTGCTTTCTATTAAAATTGCTATTCAAAGTTTTTGAAACAGAGTCTCATGTGGCCCAGGCAGGCT 4054
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4055 TCAGATTCACTATATAACTGAGAATGGCCTTGAGTTAACTCCCATGTGTGTATGTGTGTGTGTGTGTGTGTGTA 4128
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4129 TTGCATTTTGCCTGGATGTGCACTGTGCACCAGGTGAGCACTACTGCCTTTAGAGGTCTGAAGGTCTGTTTCCC 4202
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4203 GGAACTGGAGTGTCAGATGCTTGTGAGCCACCATGTGGTCTCCACAAGCTGACTTCAAACAGAATTCTCCCACT 4276
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4277 TCACATCCCACTTCACATCCCAATTGCTGATGTCAGAGGAATAAGCTACTACTGTCCCTGGCTTAAAATATTTT 4350
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4351 TAAAAGGAATTAGCAAAAGAAATGTAAGGCTGCACACTGGAAAATATACGCCTTGTGGAAAGACAATAAAGATA 4424
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4425 ACCTAGATAGAAGGGAAGACCTGGCAATAAATTAATATTTACAACTGTGAAGATGGCAATACTCCATTAAAGTA 4498
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4499 CAGATTCAGTATAGTACCTACCAGAATCCCAGCCAAATTCTTTGTGGAAATCAACAAGTTGATCTAAAATTCAT 4572
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4573 AGGAAGCCTGGTGTGATAGCATTTACCTCTAATCAGCCCTGGCACTTGAGGAGCAGAGGCAGGTGGATCTCTGT 4646
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4647 GAGTCTGAGGCCATGCTGGTAAGTTCCAGGCCAGCCAGAACTACAAAGTGAGACCTTGTATCAAAAGCAAACAA 4720
Query 2143 -------------------------------------------------------------------------- 2142
Sbjct 4721 GTAAGTAAATAGACAAAACTCACAGGGGAATTTAAAGGACCCAGAATAGCCAAGGCAATCTTGAAAAGGAACAA 4794
Query 2143 ------------------------------------------- 2142
Sbjct 4795 GGTTTGAAGACTCATTCTTTTCAATTTTTACACTTACTGCAAA 4837
