Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_08865
- Subject:
- XR_001744855.1
- Aligned Length:
- 3791
- Identities:
- 1827
- Gaps:
- 1961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGATTACCTCCTCAAAGGGCTCTAACAACTCGCATTGCTCTCAGCGTGTGAGAGGGTCCTTTGCTCTGAAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTTCTAAAATATTTGTTCAATCGTTACTTAGCAGGGGCTGGGAGTAACGGATTTTATTTTATTTTATTTTATT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTCGCGCAATCTCGGCTCACGGATTTGCTCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTAAAGGACATACCCTTTTATGTTTAAATGAAGGAACTCATTGATGCACCGAGGCGAAAGGAACCTTTAATTAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGCGTCTTCTATGCGGAGTGATCGCTTTTGTCACTTGTTCGAGGGGTGAGAGCTCCCGTCAGTTGTCCCTGTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTGTGAGCCGTCTACGAAGCCCGGGCTTGGCCTGGGCGACGCTGAGCGGCTTTAACCGGCGGCGTCCAGCCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCCGCCAGCGCTGCCGCCGCCCTCGAGGCTCCCTCTGACTGAAGGCGCGCTGAGCATCGCGGCATTAGGGGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTGGTCCCTCAAACATCCAGGGAAGCCATTTTCAGGGACTAGGTACTGACCCCCGCGAGCCGCCACAGCCACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCCCGCGCTCCGGGCCGAACGCCCGAGCTCAAGAGCTCCCGAGCTTCCGTCGGGCGGCGGCCTCACAGCTGGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCCTGAGGCGGAAGGCGCAGCCGCTCAGCTGCGGACCGGGGGCGTGGCGAGGGCGCACAGGTTCTGTTTTTCG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCGGCCCGGGGCCGCTTTCGGTTTCGTTTCCCGCCGGCGTCTCCACCCTGCGAGAGCCGCCCGCCAGCCAGCGT 814
Query 1 -------------------------------------------------------ATGGCCCAGGCCGGCGTCG 19
|||||||||||||||||||
Sbjct 815 CCGCCGCCGTCCGCGTCGCGCCACCCGCGGTCCGACGGGAGCAGGCCCAGCGGCCATGGCCCAGGCCGGCGTCG 888
Query 20 TCGGTGAGGTCACCCAGGTGCTGTGCGCGGCCGGGGGCGCCCTGGAGTTGCCCGAGCTGCGGCGCCGCTTGCGG 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCGGTGAGGTCACCCAGGTGCTGTGCGCGGCCGGGGGCGCCCTGGAGTTGCCCGAGCTGCGGCGCCGCTTGCGG 962
Query 94 ATGGGCTTGAGCGCCGACGCGCTGGAGCGGCTGCTGCGGCAGCGTGGGCGCTTCGTGGTGGCGGTGCGGGCGGG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGGGCTTGAGCGCCGACGCGCTGGAGCGGCTGCTGCGGCAGCGTGGGCGCTTCGTGGTGGCGGTGCGGGCGGG 1036
Query 168 CGGCGCAGCCGCGGCCCCGGAGCGCGTGGTGCTGGCCGCCTCGCCGCTGCGCCTGTGTCGCGCGCACCAGGGCT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGGCGCAGCCGCGGCCCCGGAGCGCGTGGTGCTGGCCGCCTCGCCGCTGCGCCTGTGTCGCGCGCACCAGGGCT 1110
Query 242 CCAAGCCGGGCTGCGTGGGGCTCTGCGCGCAGCTCCACCTCTGCAGGTTCATGGTCTACGGCGCCTGCAAGTTC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCAAGCCGGGCTGCGTGGGGCTCTGCGCGCAGCTCCACCTCTGCAGGTTCATGGTCTACGGCGCCTGCAAGTTC 1184
Query 316 CTGAGAGCCGGGAAGAACTGTAGGAATAGTCACAGCTTGACAACCGAACACAACCTGAGTGTGCTGAGAACTCA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTGAGAGCCGGGAAGAACTGTAGGAATAGTCACAGCTTGACAACCGAACACAACCTGAGTGTGCTGAGAACTCA 1258
Query 390 TGGCGTTGACCACCTGAGCTATAATGAGCTATGCCAACTCTTGTTTCAGAACGACCCCTGGCTTTTGCCAGAAA 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGCGTTGACCACCTGAGCTATAATGAGCTATGCCAACTCTTGTTTCAGAACGACCCCTGGCTTTTGCCAGAAA 1332
Query 464 TTTGCCAACATTACAACAAAGGAGATGGACCCCACGGCTCTTGTGCCTTTCAAAAGCAGTGCATCAAGCTCCAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTTGCCAACATTACAACAAAGGAGATGGACCCCACGGCTCTTGTGCCTTTCAAAAGCAGTGCATCAAGCTCCAT 1406
Query 538 ATCTGCCAGTATTTTTTACAGGGGGAATGCAAGTTTGGCACTAGCTGTAAGAGATCCCATGATTTCTCTAATTC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATCTGCCAGTATTTTTTACAGGGGGAATGCAAGTTTGGCACTAGCTGTAAGAGATCCCATGATTTCTCTAATTC 1480
Query 612 TGAGAATCTGGAAAAATTGGAGAAGTTGGGTATGAGCTCAGACCTGGTGAGCAGGCTGCCTACCATTTATAGAA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGAGAATCTGGAAAAATTGGAGAAGTTGGGTATGAGCTCAGACCTGGTGAGCAGGCTGCCTACCATTTATAGAA 1554
Query 686 ATGCACATGACATCAAGAATAAGAGCTCTGCCCCCAGCAGAGTGCCTCCTCTTTTTGTCCCACAGGGGACTTCT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATGCACATGACATCAAGAATAAGAGCTCTGCCCCCAGCAGAGTGCCTCCTCTTTTTGTCCCACAGGGGACTTCT 1628
Query 760 GAAAGAAAAGACAGTTCAGGTTCTGTGTCCCCAAACACTCTTAGCCAGGAGGAGGGTGATCAGATCTGTTTGTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAAAGAAAAGACAGTTCAGGTTCTGTGTCCCCAAACACTCTTAGCCAGGAGGAGGGTGATCAGATCTGTTTGTA 1702
Query 834 CCATATCCGGAAAAGTTGTAGCTTTCAAGATAAGTGCCATAGAGTTCATTTCCATTTGCCGTATCGATGGCAAT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCATATCCGGAAAAGTTGTAGCTTTCAAGATAAGTGCCATAGAGTTCATTTCCATTTGCCGTATCGATGGCAAT 1776
Query 908 TCTTGGATAGAGGCAAATGGGAGGATTTGGACAACATGGAACTTATTGAAGAGGCATATTGCAATCCCAAAATA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCTTGGATAGAGGCAAATGGGAGGATTTGGACAACATGGAACTTATTGAAGAGGCATATTGCAATCCCAAAATA 1850
Query 982 GAAAGGATCCTGTGCTCTGAGTCAGCCAGTACATTTCACTCTCATTGTCTGAACTTTAACGCCATGACTTACGG 1055
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAAAGGATCCTGTGCTCTGAGTCAGCCAGTACCTTTCACTCTCATTGTCTGAACTTTAACGCCATGACTTACGG 1924
Query 1056 TGCTACCCAGGCTCGCCGCCTCTCCACGGCCTCCTCTGTCACCAAACCTCCACACTTCATCCTCACCACTGACT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TGCTACCCAGGCTCGCCGCCTCTCCACGGCCTCCTCTGTCACCAAACCTCCACACTTCATCCTCACCACTGACT 1998
Query 1130 GGATTTGGTACTGGAGTGATGAGTTTGGTTCTTGGCAGGAATATGGAAGACAGGGCACGGTGCACCCTGTGACC 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GGATTTGGTACTGGAGTGATGAGTTTGGTTCTTGGCAGGAATATGGAAGAC----------------------- 2049
Query 1204 ACTGTCAGCAGTAGCGACGTGGAGAAGGCCTACCTGGCCTACTGTACACCGGGGTCTGACGGCCAGGCAGCCAC 1277
Sbjct 2050 -------------------------------------------------------------------------- 2049
Query 1278 CTTGAAGTTCCAGGCCGGAAAGCACAACTACGAGTTAGATTTCAAAGCCTTCGTTCAGAAAAACCTGGTCTATG 1351
|||||||||||||||||||||||||||||
Sbjct 2050 ---------------------------------------------AGCCTTCGTTCAGAAAAACCTGGTCTATG 2078
Query 1352 GCACAACTAAAAAGGTTTGCCGCAGACCCAAATACGTGTCTCCCCAGGATGTGACGACCATGCAAACCTGCAAT 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 GCACAACTAAAAAGGTTTGCCGCAGACCCAAATACGTGTCTCCCCAGGATGTGACGACCATGCAAACCTGCAAT 2152
Query 1426 ACCAAGTTTCCAGGCCCGAAGAGCATCCCAGACTATTGGGACTCCTCTGCCCTGCCAGACCCAGGCTTTCAGAA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 ACCAAGTTTCCAGGCCCGAAGAGCATCCCAGACTATTGGGACTCCTCTGCCCTGCCAGACCCAGGCTTTCA--- 2223
Query 1500 GATCACCCTTAGTTCTTCCTCGGAAGAGTATCAGAAGGTCTGGAACCTCTTTAACCGCACGCTGCCTTTCTACT 1573
Sbjct 2224 -------------------------------------------------------------------------- 2223
Query 1574 TTGTTCAGAAGATTGAGCGAGTACAGAACCTGGCCCTCTGGGAAGTCTACCAGTGGCAAAAAGGACAGATGCAG 1647
||||||||||||||||||||
Sbjct 2224 ------------------------------------------------------GGCAAAAAGGACAGATGCAG 2243
Query 1648 AAGCAGAATGGAGGGAAGGCCGTGGACGAGCGGCAGCTGTTCCACGGCACCAGCGCCATTTTTGTGGACGCCAT 1721
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 AAGCAGAACGGAGGGAAGGCCGTGGACGAGCGGCAGCTGTTCCACGGCACCAGCGCCATTTTTGTGGACGCCAT 2317
Query 1722 CTGCCAGCAGAACTTTGACTGGCGGGTCTGTGGTGTTCATGGCACTTCCTACGGCAAGGGGAGCTACTTTGCCC 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2318 CTGCCAGCAGAACTTTGACTGGCGGGTCTGTGGTGTTCATGGCACTTCCTACGGCAAGGGGAGCTACTTTGCCC 2391
Query 1796 GAGATGCTGCATATTCCCACCACTACAGCAAATCCGACACGCAGACCCACACGATGTTCCTGGCCCGGGTGCTG 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 GAGATGCTGCATATTCCCACCACTACAGCAAATCCGACACGCAGACCCACACGATGTTCCTGGCCCGGGTGCTG 2465
Query 1870 GTGGGCGAGTTCGTCAGGGGCAATGCGTCCTTTGTCCGTCCGCCGGCCAAGGAGGGCTGGAGCAACGCCTTCTA 1943
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2466 GTGGGCGAGTTCGTCAGGGGCAATGCCTCCTTTGTCCGTCCGCCGGCCAAGGAGGGCTGGAGCAACGCCTTCTA 2539
Query 1944 TGATAGCTGCGTGAACAGTGTGTCCGACCCCTCCATCTTTGTGATCTTTGAGAAACACCAGGTCTACCCAGAGT 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2540 TGATAGCTGCGTGAACAGTGTGTCCGACCCCTCCATCTTTGTGATCTTTGAGAAACACCAGGTCTACCCAGAGT 2613
Query 2018 ATGTCATCCAGTACACCACCTCCTCCAAGCCCTCGGTCACACCCTCCATCCTGCTGGCCTTGGGCTCCCTGTTC 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2614 ATGTCATCCAGTACACCACCTCCTCCAAGCCCTCGGTCACACCCTCCATCCTGCTGGCCTTGGGCTCCCTGTTC 2687
Query 2092 AGCAGCCGACAG-------------------------------------------------------------- 2103
||||||||||||
Sbjct 2688 AGCAGCCGACAGTGAGCGCACAGGAGTGTTCCAGGCCTTTCACCTGCTCTGCCTTGAAATGGCTATTTGGGCCT 2761
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2762 TTCCTTTTCTTTTTAAACAGAAACTTTTAATGAACTGTTCTCTTAACATTGACCTCTCAATGAAGTTATGTTCT 2835
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2836 TAATCTCTTGCTAATAATGATTTTTACTTTTAAGTCACTTTTGGGTTCACTAGTGGATTAACCAGAAGTGATTG 2909
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2910 TAGTTGAGTCCAGTTTTGCTTTTTAATAATGTGTTGAAGTTTTAGTTTTTACTCTTTGTTGACTTTGCTGCTTA 2983
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 2984 TTGGCACCAGGGACAGAGTTTCTAGATACAATTTTATGGATTGGTTTTAATTTTTATGAGTTTGTCTCTGCAGT 3057
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3058 GATTCGGTTTCTCAGAGTCTCATGGCATCATAGTTTTTCCAGAATGACACAGTAGCCACCGGTGGATGACAGCC 3131
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3132 CACGGGCGGCACAGTCACTTCTGCCTGTTGCTCTGACACCAACCCAGGCAGCTCTGCTGTGGCTTCTCCTGGGC 3205
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3206 TCTGGCATTAGTTGGTCTGTGTCACATTGTCAGAACAGGTGGCTGCTGTGTGGTGCCATCGAGTCCCTGCTGGT 3279
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3280 TCCCCTTGTCCTGGGAGGGTCACCCATTGCCCAAGGAAGTGCATCCACCTGGCAGGTGACCTGGAGGAGTAGCT 3353
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3354 TCCCCGAGGACCCCCAGGCTTGGCCTGTGATTGCGCAAACCCACATTTCCTAAGCACACTGGACACCCTTCGAG 3427
Query 2104 -------------------------------------------------------------------------- 2103
Sbjct 3428 TGTGGGTTTTAACATCCCTGTGAGATTGAATACTTGTGCCACACATGTCACAAAAGAGTATGGAAATAAAAGAA 3501
Query 2104 ----------------- 2103
Sbjct 3502 AATTTATCCGAAGTGGA 3518
