Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09099
Subject:
XR_001737463.2
Aligned Length:
2203
Identities:
1585
Gaps:
547

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAGCGGGCTGCGGCCCCCTCCCAAAACCCGGGGAAGTGGATTCTACTCTACGCTCCGCTCCGCTCCGCTCCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCACCAACCCCGGGCCGCAGTCCTGACGAGCGGGTCAGGGCTTGTCGGGCGGAAGCCTGGCCTGGAGCCTGGA  148

Query    1  ------------------------------------------------------------------ATGTTTGT  8
                                                                              ||||||||
Sbjct  149  AGGGGGAGACGGCCCGAGCGGGAGCGGGAGCGGACGCGGCCTCAGTCCTGCGCGGAATATTGAAGGATGTTTGT  222

Query    9  TCCAAGATCTCTAAAAATCAAGAGGAATGCTAATGATGATGGCAAAAGTTGTGTGGCTAAGATAATTAAACCAG  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCCAAGATCTCTAAAAATCAAGAGGAATGCTAATGATGATGGCAAAAGTTGTGTGGCTAAGATAATTAAACCAG  296

Query   83  ACCCAGAAGACCTTCAGTTGGACAAAAGCAGAGATGTTCCCGTTGATGCTGTAGCTACAGAAGCAGCCACAATA  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCCAGAAGACCTTCAGTTGGACAAAAGCAGAGATGTTCCCGTTGATGCTGTAGCTACAGAAGCAGCCACAATA  370

Query  157  GACAGGCACATCAGCGAATCATGCCCTTTCCCCAGCCCAGGTGGCCAGTTGGCAGAGGTTCATTCAGTAAGTCC  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GACAGGCACATCAGCGAATCATGCCCTTTCCCCAGCCCAGGTGGCCAGTTGGCAGAGGTTCATTCAGTAAGTCC  444

Query  231  CGAGCAGGGTGCGAAGGACAGCCATCCTTCTGAAGAGCCCGTTAAGTCATTTTCCAAAACACAGCGCTGGGCAG  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGAGCAGGGTGCGAAGGACAGCCATCCTTCTGAAGAGCCCGTTAAGTCATTTTCCAAAACACAGCGCTGGGCAG  518

Query  305  AACCAGGGGAACCCATCTGTGTTGTCTGTGGTCGTTATGGAGAGTATATCTGTGATAAGACAGATGAAGATGTG  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AACCAGGGGAACCCATCTGTGTTGTCTGTGGTCGTTATGGAGAGTATATCTGTGATAAGACAGATGAAGATGTG  592

Query  379  TGTAGTTTGGAGTGTAAAGCGAAACATCTTCTACAAGTTAAGGAAAAGGAAGAGAAATCAAAACTCAGCAATCC  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGTAGTTTGGAGTGTAAAGCGAAACATCTTCTACAAGTTAAGGAAAAGGAAGAGAAATCAAAACTCAGCAATCC  666

Query  453  ACAGAAGGCTGATTCTGAGCCAGAGTCTCCACTGAATGCTTCCTATGTCTACAAAGAGCACCCCTTTATTTTGA  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAGAAGGCTGATTCTGAGCCAGAGTCTCCACTGAATGCTTCCTATGTCTACAAAGAGCACCCCTTTATTTTGA  740

Query  527  ACCTTCAGGAAGACCAGATTGAAAATCTTAAACAGCAGCTGGGAATTTTAGTTCAAGGGCAAGAAGTCACCAGG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCTTCAGGAAGACCAGATTGAAAATCTTAAACAGCAGCTGGGAATTTTAGTTCAAGGGCAAGAAGTCACCAGG  814

Query  601  CCCATTATTGACTTTGAACATTGTAGTCTCCCTGAGGTCTTAAATCACAACTTGAAGAAATCGGGCTATGAGGT  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  815  CCCATTATTGACTTTGAACATTGTAGTCTCCCTGAGGTCTTAAATCACAACTTGAAGAAATCAGGCTATGAGGT  888

Query  675  GCCAACTCCCATTCAAATGCAGATGATTCCTGTGGGACTTCTGGGAAGAGACATTCTGGCCAGTGCAGATACTG  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCCAACTCCCATTCAAATGCAGATGATTCCTGTGGGACTTCTGGGAAGAGACATTCTGGCCAGTGCAGATACTG  962

Query  749  GCTCAGGAAAAACAGCTGCTTTTCTTCTTCCTGTTATCATGCGAGCTTTATTCGAGAGCAAAACTCCATCTGCG  822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTCAGGAAAAACAGCTGCTTTTCTTCTTCCTGTTATCATGCGAGCTTTATTCGAGAGCAAAACTCCATCTGCG  1036

Query  823  CTCATTCTTACACCAACCAGAGAGTTAGCCATTCAGATAGAGAGACAAGCTAAAGAATTGATGAGTGGCCTGCC  896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTCATTCTTACACCAACCAGAGAGTTAGCCATTCAGATAGAGAGACAAGCTAAAGAATTGATGAGTGGCCTGCC  1110

Query  897  ACGCATGAAAACTGTGCTTCTTGTAGGGGGCTTACCCTTACCCCCACAGCTTTATCGTCTGCAACAACATGTTA  970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ACGCATGAAAACTGTGCTTCTTGTAGGGGGCTTACCCTTACCCCCACAGCTTTATCGTCTGCAACAACATGTTA  1184

Query  971  AGGTTATCATAGCAACCCCTGGGCGACTTCTGGATATAATAAAGCAGAGCTCTGTAGAACTCTGTGGTGTAAAG  1044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGGTTATCATAGCAACCCCTGGGCGACTTCTGGATATAATAAAGCAGAGCTCTGTAGAACTCTGTGGTGTAAAG  1258

Query 1045  ATTGTGGTAGTAGATGAAGCTGATACCATGTTAAAGATGGGTTTTCAACAACAAGT-GCTTGACATTTTGGAAA  1117
            |||||||||||||||||||               ||        |||.|      | |||||            
Sbjct 1259  ATTGTGGTAGTAGATGAAG---------------AG--------TCACC------TGGCTTG------------  1291

Query 1118  ACATTCCTAATGATTGTCAGACCATTTTGGTTTCAG-CCACAATTCCAACTAGCATAGAACAGCTAGCAAGCCA  1190
                 |.||.|||...||||||           .|| |||.|..||..|||.|.|||                 
Sbjct 1292  -----CTTAGTGACCATCAGAC-----------GAGACCAGACCTCTCACTTGGATA-----------------  1332

Query 1191  GCTTCTGCATAATCC------TGTGAGAATTATCACTGGAGAAAAGAACCTACCTTGTGCCAATGTACGTCAGA  1258
              |||||    ||.|      ||||||        .|||||..|.|||.||  ||    .|||   ||      
Sbjct 1333  --TTCTG----ATTCAGTAGGTGTGAG--------TTGGAGCCAGGAATCT--CT----ACAA---AC------  1377

Query 1259  TTATTTTGTGGGTAGAAGACCCAGCCAAAAAGAAAAAATTATTTGAAATTTTAAATGATAAGAAACTCTTTAAG  1332
            |.|||               ||||                                ||||||||||||||||||
Sbjct 1378  TCATT---------------CCAG--------------------------------GATAAGAAACTCTTTAAG  1404

Query 1333  CCTCCAGTGTTAGTATTTGTGGACTGCAAACTAGGAGCAGATCTTTTGAGTGAAGCCGTTCAGAAAATCACAGG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405  CCTCCAGTGTTAGTATTTGTGGACTGCAAACTAGGAGCAGATCTTTTGAGTGAAGCCGTTCAGAAAATCACAGG  1478

Query 1407  GCTGAAAAGAATATCTATACATTCGGAGAAGTCGCAAATAGAAAGGAAAAACATATTGAAGGGATTACTTGAAG  1480
            |||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  GCTGAAAAGCATATCTATACATTCAGAGAAGTCGCAAATAGAAAGGAAAAACATATTGAAGGGATTACTTGAAG  1552

Query 1481  GAGACTATGAAGTTGTAGTGAGCACAGGAGTCTTGGGACGAGGCCTAGACTTGATCAGTGTCAGGCTGGTTGTC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  GAGACTATGAAGTTGTAGTGAGCACAGGAGTCTTGGGACGAGGCCTAGACTTGATCAGTGTCAGGCTGGTTGTC  1626

Query 1555  AATTTTGATATGCCTTCAAGTATGGATGAGTATGTCCATCAG-------------ATTGGAAGAGTAGGAAGAT  1615
            ||||||||||||||||||||||||||||||||||||||||||             ||     .|.||.||||.|
Sbjct 1627  AATTTTGATATGCCTTCAAGTATGGATGAGTATGTCCATCAGTCTACTCACCACAAT-----CAATATGAAGTT  1695

Query 1616  T-------------AGGTCAAAATGGAAC-AGCGATTAC-TTTCATCAATAATAATTCAAAAAGACTCTTCTGG  1674
            |             ||||    ||||.|| ||.|.|.|| |.|||||          |||...||||.|.||||
Sbjct 1696  TACTCCATAAACAGAGGT----ATGGTACAAGAGGTAACGTGTCATC----------CAAGGTGACTTTCCTGG  1755

Query 1675  GATATTGCAAAACGAGTAAAGCCCAC-----------AGGA-TCCATTCTTCCCCCTCAGTTATTAAATTCCCC  1736
            .|    ||  .||.|||||| |..||           |||| ||..||.||.||.|..||            .|
Sbjct 1756  CA----GC--CACCAGTAAA-CTGACTCCGGACAGATAGGACTCTTTTGTTGCCGCCAAG------------GC  1810

Query 1737  ATACCTTC-ATGAC--CAGAAG----AG----AAAG---GAA---CAACAGAAAGATAA--ACAG---ACACAG  1788
            ||||.|.| |||||  ||||.|    ||    |.||   |||   ||||..|..|||||  | ||   ||||||
Sbjct 1811  ATACTTACAATGACCTCAGAGGCTCTAGGGCCACAGTGTGAAAACCAACCAATGGATAATTA-AGTAAACACAG  1883

Query 1789  AATGATCTGGT--TAC----------AGGAGCTAATCTTATGGATATTATCAGAAA--------AC-----ATG  1837
              |..|||.||  |||          ||.|.|| ||.||||  ||.||||    ||        ||     |||
Sbjct 1884  --TTCTCTTGTTCTACTGTTAGTGTGAGAACCT-ATTTTAT--ATTTTAT----AATGTGTTGCACGTGTGATG  1948

Query 1838  ATAAAAG---TAATTCTCAGAAA----------------------------------  1857
            |||.|.|   .||||   |.|||                                  
Sbjct 1949  ATATAGGACAAAATT---ACAAATAAAGCATAAGACGAGTGTTTATTTTTGTAATGT  2002

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