Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09121
Subject:
XM_006538467.3
Aligned Length:
1964
Identities:
1316
Gaps:
391

Alignment

Query    1  ATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGC  74
            ||||||||||||||||||   |.|||||||||||||||.||||||.|.|||||.||||.|||.|||||||||||
Sbjct    1  ATGTCGTGGCTCTTCGGC---ATCAAGGGCCCCAAGGGCGAAGGCACAGGGCCTCCGCTGCCCTTGCCGCCCGC  71

Query   75  GCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACT  148
            .||.||||||||.|||||||||||.||||||||...||||||||||||..||||||||||||||||||||||||
Sbjct   72  TCAACCCGGGGCGGAGGGCGGCGGTGACCGCGGGGCGGGAGACCGGCCATCGCCCAAGGACAAATGGAGCAACT  145

Query  149  TCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCC  222
            |||||||.||.||||||||.||.||.|||||.|||||.||||||.|||||||||||||..|.|||||||||||.
Sbjct  146  TCGACCCGACGGGCCTGGAACGTGCGGCCAAAGCGGCTCGCGAGTTGGAGCACTCGCGCCATGCCAAGGAGGCA  219

Query  223  CTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAGGCCGC  296
            ||||.|||.||.||||||||||||||||||||||||.||||.||.||||||||||||||.|||||.||.||.||
Sbjct  220  CTGAGTCTCGCACAGATGCAGGAGCAGACGCTGCAGCTGGAACAGCAGTCCAAGCTCAAGGAGTACGAAGCTGC  293

Query  297  CGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCC  370
            |||.||||||||.||||||||.||||||||.|.|||.||.|||||.||.|||||.|||||||..||.|||||.|
Sbjct  294  CGTAGAGCAGCTGAAGAGCGAACAGATCCGTGTGCAAGCCGAGGAAAGAAGGAAAACCCTGACTGAAGAGACAC  367

Query  371  GGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAG  444
            |.|||||||||||.|||||||||||.||.||.|||||.||.||.||||||||.||||||||.|||||.||.|||
Sbjct  368  GACAGCACCAGGCTAGGGCCCAGTACCAGGATAAGCTCGCTCGACAGCGCTATGAGGACCAGCTGAAACAACAG  441

Query  445  CGACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCAC  518
            |.||||||.|||||.|||||||||.||||.||.||||||||.||||||||||||||.|||||.|||||||||||
Sbjct  442  CAACTTCTGAATGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGCCAC  515

Query  519  CGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCA  592
            .||||||||.||||||||||||.||||.||.||.||||||.||||.|||||..|.||.|||||.||.||.||||
Sbjct  516  TGTGGAGCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTTGCGGGTGGAAGCTGAAGCCCGAGCACGGGCCA  589

Query  593  AGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTC  666
            ||||.||.||.|||||||||||.||||||||.||.|||||.||.||.|||||..|.||||||||.||||||.||
Sbjct  590  AGGCTGATCGAGAGAATGCAGATATCATCCGGGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATC  663

Query  667  TTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGT  740
            ||||||||.||||||||.||||||||||||.||||.||||||||||||||.||||||||||||.||||||||||
Sbjct  664  TTGGAGTCTATCAGGACAGCTGGCACCTTGCTTGGTGAAGGATTCCGTGCATTTGTGACAGACTGGGACAAAGT  737

Query  741  GACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTG  814
            ||||||.||||||||||||.||||.||..|.|||||.||.|||||.||.||.||||||||.||..|.||..|||
Sbjct  738  GACAGCTACGGTGGCTGGGTTGACACTATTAGCTGTTGGAGTCTATTCTGCAAAGAATGCTACTTCTGTTGCTG  811

Query  815  GCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCG  888
            |.||.|..||.|||||.||..||||.|||||||||.|.|||||.|||||.|||||.|||.|.|||||.|||||.
Sbjct  812  GTCGGTATATTGAGGCCCGATTGGGAAAGCCGTCCTTGGTGAGAGAGACCTCCCGAATCTCAGTGCTAGAGGCA  885

Query  889  CTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGC--TGGAGGGTGTTGTGCTT  960
            .||.||||.|||||||||||||||.||||.||..||||..||||||||||  |||  |||||||.||..|.||.
Sbjct  886  TTGAGGCATCCCATCCAGGTCAGCAGGCGACTGGTCAGCAGACCCCAGGA--TGCATTGGAGGGCGTCATCCTC  957

Query  961  AGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTA  1034
            |||||.||||||||.||||||||.||.||.||.|||||.|||||.||.||.||||||||||||....|||||||
Sbjct  958  AGTCCTAGCCTGGAGGCACGGGTCCGAGATATTGCCATCGCAACAAGAAATACCAAGAAGAACAAAAGCCTGTA  1031

Query 1035  CAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAG  1108
            .|||.||.|.|||.||||||||||.||.||.||.||.|||||.||.||||||||||||||.||.|||||.||||
Sbjct 1032  TAGGAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCATTCAG  1105

Query 1109  GCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAG  1182
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||||||
Sbjct 1106  GCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCAATGGGGCGGGAGGGTGTGACTGCCATGCACAAG  1179

Query 1183  CTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAA  1256
            .||||.||||||||.|..||||||||.||.||||||||||||||..||||||||||||||||||||||..||||
Sbjct 1180  GTCTTCGACTGGGCAAGCACCAGCCGACGAGGCCTCCTGCTCTTTGTGGATGAAGCAGACGCCTTCCTCAGGAA  1253

Query 1257  GCGAGCCACTGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATG---GGCCAAC  1327
            .|||||.|||||..|||||||..|.||||||||.||.||.|||||.||||||||   .||||.|   ||.||.|
Sbjct 1254  ACGAGCGACTGAAAAGATAAGTGAAGACCTCAGGGCTACTCTGAATGCCTTCCT---ACACAGGACAGGACAGC  1324

Query 1328  ACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATT  1401
            ||||.|..||.||||||||||||||||||||.||.|.||||||||||||.||.||.||.|||||...|||||||
Sbjct 1325  ACAGTAGTAAGTTCATGCTGGTCCTGGCCAGTAACCAGCCTGAGCAGTTTGATTGGGCTATCAATGACCGCATT  1398

Query 1402  GACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTG  1475
            ||||.|||||||..|||.|.||||||.||||.|||||||||.|||||||||||||||.||.||||||||||.|.
Sbjct 1399  GACGAGATGGTCTGCTTTGCCCTGCCACAGCGGGAGGAGCGAGAGCGCCTGGTGAGAATGTATTTTGACAAGTA  1472

Query 1476  TGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTAC-GGGAGGAAGTGCTCG  1548
            |||.|||||||||||||||||||||||                  .||||       | ||.|||||       
Sbjct 1473  TGTCCTTAAGCCGGCCACAGAAGGAAA------------------GCAGT-------CAGGAAGGAA-------  1514

Query 1549  GAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGT---CCTGGCAGGCCA-  1618
                      ||||||                   |||.||       |||||.|.||   |||  || .||| 
Sbjct 1515  ----------GGCTGA-------------------GGATAT-------CTGGCAGAGTTTACCT--CA-TCCAA  1549

Query 1619  ---CGGC-------ATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGC  1682
               ||||       |.|.||  |||           |.||||     .|||.||||.||.|.            
Sbjct 1550  CTTCGGCTGTACAAAAAAGC--CCA-----------CGCACT-----AATGGTGGAAGCATC------------  1593

Query 1683  TGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTAT  1756
                                                                                      
Sbjct 1594  --------------------------------------------------------------------------  1593

Query 1757  CCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCC  1830
                                                                                      
Sbjct 1594  --------------------------------------------------------------------------  1593

Query 1831  TGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGG  1904
                                                                                      
Sbjct 1594  --------------------------------------------------------------------------  1593

Query 1905  TGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG  1944
                                                    
Sbjct 1594  ----------------------------------------  1593

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.