Construct: ORF ccsbBroad304_09121

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012657.1_s304c1, BRDN0000404964
Derived from:
ccsbBroadEn_09121
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATAD3B (83858)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09121
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83858 ATAD3B ATPase family AAA domain co... NM_031921.6 99.9% 99.8% 446A>G
2 human 83858 ATAD3B ATPase family AAA domain co... XM_011542244.1 93% 92.9% 283_426del;590A>G
3 human 83858 ATAD3B ATPase family AAA domain co... XM_005244806.3 89.3% 88.1% (many diffs)
4 human 83858 ATAD3B ATPase family AAA domain co... NM_001317238.2 88% 83.7% (many diffs)
5 human 55210 ATAD3A ATPase family AAA domain co... NM_001170535.3 86.5% 84.5% (many diffs)
6 human 55210 ATAD3A ATPase family AAA domain co... XM_024448098.1 83.2% 81.1% (many diffs)
7 human 55210 ATAD3A ATPase family AAA domain co... NM_018188.5 80.6% 78.7% (many diffs)
8 human 83858 ATAD3B ATPase family AAA domain co... XR_946776.2 76.2% (many diffs)
9 human 83858 ATAD3B ATPase family AAA domain co... XR_001737470.1 76% (many diffs)
10 human 55210 ATAD3A ATPase family AAA domain co... NM_001170536.2 74.6% 72.6% (many diffs)
11 human 83858 ATAD3B ATPase family AAA domain co... XR_241045.2 74.5% (many diffs)
12 human 83858 ATAD3B ATPase family AAA domain co... XM_011542241.3 73.2% 67.5% (many diffs)
13 human 55210 ATAD3A ATPase family AAA domain co... XR_001737282.1 72.4% (many diffs)
14 human 55210 ATAD3A ATPase family AAA domain co... XR_002956997.1 70.2% (many diffs)
15 human 83858 ATAD3B ATPase family AAA domain co... XR_001737468.1 63.6% (many diffs)
16 human 219293 ATAD3C ATPase family AAA domain co... NM_001039211.3 59% 56% (many diffs)
17 human 83858 ATAD3B ATPase family AAA domain co... XR_002957738.1 54.5% (many diffs)
18 human 83858 ATAD3B ATPase family AAA domain co... XR_001737469.1 49.5% (many diffs)
19 mouse 108888 Atad3a ATPase family, AAA domain c... NM_179203.3 75.2% 79.9% (many diffs)
20 mouse 108888 Atad3a ATPase family, AAA domain c... XM_006538467.3 67% 71.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2010
ORF length:
1944
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc gtggctcttc ggcgttaaca agggccccaa gggtgaaggc gcggggccgc
121cgccgccttt gccgcccgcg cagcccgggg ccgagggcgg cggggaccgc ggtttgggag
181accggccggc gcccaaggac aaatggagca acttcgaccc caccggcctg gagcgcgccg
241ccaaggcggc gcgcgagctg gagcactcgc gttacgccaa ggaggccctg aatctggcgc
301agatgcagga gcagacgctg cagttggagc aacagtccaa gctcaaagag tatgaggccg
361ccgtggagca gctcaagagc gagcagatcc gggcgcaggc tgaggagagg aggaagaccc
421tgagcgagga gacccggcag caccaggcca gggcccagta tcaagacaag ctggcccggc
481agcgctacga ggaccaactg aagcagcagc gacttctcaa tgaggagaat ttacggaagc
541aggaggagtc cgtgcagaag caggaagcca tgcggcgagc caccgtggag cgggagatgg
601agctgcggca caagaatgag atgctgcgag tggagaccga ggcccgggcg cgcgccaagg
661ccgagcggga gaatgcagac atcatccgcg agcagatccg cctgaaggcg tccgagcacc
721gtcagaccgt cttggagtcc atcaggacgg ctggcacctt gtttggggaa ggattccgtg
781cctttgtgac agaccgggac aaagtgacag ccacggtggc tgggctgacg ctgctggctg
841tcggggtcta ctcagccaag aatgcgacag ccgtcactgg ccgcttcatc gaggctcggc
901tggggaagcc gtccctagtg agggagacgt cccgcatcac ggtgctggag gcgctgcggc
961accccatcca ggtcagccgg cggctcctca gtcgacccca ggacgtgctg gagggtgttg
1021tgcttagtcc cagcctggaa gcacgggtgc gcgacatcgc catagcaacc aggaacacca
1081agaagaaccg gggcctgtac aggcacatcc tgctgtatgg gccaccaggc accgggaaga
1141cgctgtttgc caagaaactc gccctgcact caggcatgga ctacgccatc atgacaggcg
1201gggacgtggc ccccatgggg cgggaaggcg tgaccgccat gcacaagctc tttgactggg
1261ccaataccag ccggcgcggc ctcctgctct tcatggatga agcagacgcc ttccttcgga
1321agcgagccac tgaggagata agcaaggacc tcagagccac actgaacgcc ttcctgtacc
1381acatgggcca acacagcaac aaattcatgc tggtcctggc cagcaatctg cctgagcagt
1441tcgactgtgc catcaacagc cgcattgacg tgatggtcca cttcgacctg ccgcagcagg
1501aggagcggga gcgcctggtg agactgcatt ttgacaactg tgttcttaag ccggccacag
1561aaggaaaacg gcgcctgaag ctggcccagt ttgactacgg gaggaagtgc tcggaggtcg
1621ctcggctgac ggagggcatg tcgggccggg agatcgctca gctggccgtg tcctggcagg
1681ccacggcata tgcctccaag gacggggtcc tcactgaggc catgatggac gcctgtgtgc
1741aagatgctgt ccagcagtac cgacagaaga tgcgctggct gaaggcggag gggcctgggc
1801gcggggtcga gcacccccta tccggagtcc aaggcgagac cctcacctca tggagcctgg
1861ccacggaccc ctcctacccc tgccttgccg gcccctgcac atttaggata tgctcctgga
1921tggggactgg gctgtgccca gggcctctgt cccccaggat gtcttgtggt ggcggtcggc
1981cgttctgccc cccagggcac cccctgttgt acccaacttt cttgtacaaa gtggttggta
2041agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
2101ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)

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