Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09121
Subject:
XR_001737282.1
Aligned Length:
2502
Identities:
1812
Gaps:
613

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTGTGTGGCGCCTGCGCAGTGGCGGTGACCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGCGCGA  74

Query    1  ----------------------------------------------------ATGTCGTGGCTCTTCGGCGTTA  22
                                                                ||||||||||||||||||.|||
Sbjct   75  GTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGCATTA  148

Query   23  ACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGGCGGC  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGGCGGC  222

Query   97  GGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGGAGCG  170
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGGACCGCGGGTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGGAGCG  296

Query  171  CGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATGCAGG  244
            |||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||
Sbjct  297  CGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGGACGCCCTGAATCTGGCACAGATGCAGG  370

Query  245  AGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAG  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAG  444

Query  319  CAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCA  392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCA  518

Query  393  GTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCGACTTCTCAATGAGGAGAATT  466
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  519  GTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATT  592

Query  467  TACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTG  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTG  666

Query  541  CGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGA  614
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGA  740

Query  615  CATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTG  688
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTG  814

Query  689  GCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTG  762
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  815  GCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCACGGTGGCTGGGCTG  888

Query  763  ACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CGTCACTGGCCGCTTCATCGAGGCTCGGC  835
            ||||||||||||||.|||||||||||||||||||||||.|| || .|||.|.||||||||||||||||||||||
Sbjct  889  ACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTGTCGCCGGCCGCTTCATCGAGGCTCGGC  961

Query  836  TGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCATCCAGGTC  909
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  962  TGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCCATCCAGGTC  1035

Query  910  AGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGT  983
            |||||||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1036  AGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGTGCTCAGTCCCAGCCTGGAAGCACGGGT  1109

Query  984  GCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGGGC  1057
            |||||||||||||||||||||.||||||||||||||||||||..|||||||||||.||||||||.||||.||||
Sbjct 1110  GCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACATCCTGATGTACGGGC  1183

Query 1058  CACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACA  1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  CACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACA  1257

Query 1132  GGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAG  1205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAG  1331

Query 1206  CCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGAGATAAGCA  1279
            |||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||.|||.||||||||.
Sbjct 1332  CCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACCGAGAAGATAAGCG  1405

Query 1280  AGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAAATTCATGCTGGTCCTG  1353
            ||||||||||.|||||||||||||||||||||||||.||.||||||.|||||||||||.|||||||||||||||
Sbjct 1406  AGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAAGTTCATGCTGGTCCTG  1479

Query 1354  GCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCC  1427
            ||||||||.|..||.||||||||||||||.||||||||...||||||..|.|.|||||||||||||||||||||
Sbjct 1480  GCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTTCGACCTGCC  1553

Query 1428  GCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAA  1501
            ...|||||||||.|||||||||||                                                  
Sbjct 1554  AGGGCAGGAGGAACGGGAGCGCCT--------------------------------------------------  1577

Query 1502  AACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATG  1575
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578  ---GGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATG  1648

Query 1576  TCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCAC  1649
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||
Sbjct 1649  TCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGAC  1722

Query 1650  TGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGG  1723
            .|||||||||||||||.||.|.|||||||||||||||||||||.|||..|||||||||.|||||||||||||||
Sbjct 1723  CGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGG  1796

Query 1724  AGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCA-AGGCGAGACCCTCACCTCATGGAGCCTGGC  1796
            |.|||||||||||.||||.|||||.|.|||.||||.||||||| ||| ||||.||.||.||||.||||||||||
Sbjct 1797  AAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCCTGAGTCCACAGG-GAGATCCACAGCTCACGGAGCCTGGC  1869

Query 1797  CACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGT  1870
            |.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1870  CGCGGACCCCTCCCACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGGTGGGGACTGGGCTGT  1943

Query 1871  GCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG  1944
            ||||||||||||||||||||||||||||||||||||..||||||||||||||||||||||||||||||||||||
Sbjct 1944  GCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGCGGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG  2017

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 2018  TAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTG  2091

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 2092  GCTCACAGGGGGAGGGTGAGGCTTTGCACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGC  2165

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 2166  CCCCGGGGCAGCAGGAGCCAGGCAGGTGATGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGCGC  2239

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 2240  CTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAACCCTGCTTCCCCCTGTGGCCGGCATGCCCCGATCTTTCAC  2313

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 2314  ACACTGGTGACCCTGAGAGAGGAGGGAGGAGGGAACCTGGCGGGGGTGTCTGAGGCCGCACTGTCAGCTGGCCG  2387

Query 1945  ------------------------------------------------------------  1944
                                                                        
Sbjct 2388  GTCCAAGCCTGTGGCTGGAGCTGGGGTCTGTTTACCTAATAAAGTCCCACAGGTGCCTCA  2447

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