Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09121
Subject:
XR_001737469.1
Aligned Length:
3921
Identities:
1943
Gaps:
1977

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGC  74

Query    1  --------------------------------------------------------ATGTCGTGGCTCTTCGGC  18
                                                                    ||||||||||||||||||
Sbjct   75  CCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGC  148

Query   19  GTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG  92
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG  222

Query   93  CGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG  296

Query  167  AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATG  370

Query  241  CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAA--------------------------------  282
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct  371  CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGCTGGAGTGCAATGGCGCAATCTCGGCTCACT  444

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  445  GCAACCTCCGCCTCCCGGGTTCAAGCGATTCATCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACGCGC  518

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  519  CACCACGCCTGGCTAATGTTGTATTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCTAACTCC  592

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  593  CGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAACTGCTGGGATTACAGGCACGCGCCACCACGCCTGGCCT  666

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  667  ATTTTATTTTATTTTGAGACAGAGTGTCACTCTGTCCCCCAGTCTGGCGTGCAATGGTTTGATCTCGGCTCACT  740

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  741  GCAACCTCCACCTCCCGGGTTCAACCTCCTGCCTCAGCCTTCCGAGCAGCTGGGACTACAGGAGCCTGCCACCA  814

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  815  CATCTGGCGAATTTTTGTATTTTTAGTAGAGAAGGGGGTTCAGCATGTTGTCCAGGTTGGTCTTGAACTCCTGA  888

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  889  CCTCAGGTGATCCAGCCACTTTGGCCTCACAAAGTGCTGGGATTATAGGCAAGAGCGATGGCGCCCGGCCCACT  962

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  963  CAGCAGGATTCCTAGAATGGGCACGAGCTCTGCCCTCATCACAGTCCAAAAGTGAGCACCTGCCTGGAGCTGCC  1036

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1037  CAGAAACAGCCTTGTGGGGTGGGGTTGGTGTCTGACCTCCCTCCCCGGGGGCCTTCGCAGGCTTCTCTGCTGGT  1110

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1111  GCTTCTGTGCCTGTGGGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCAGCTGGAAGCCCTGAACCT  1184

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1185  GCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCAGACACAGGAGCGGCTGTCAGGCA  1258

Query  283  -----------------------------------------------GAGTATGAGGCCGCCGTGGAGCAGCTC  309
                                                           |||||||||||||||||||||||||||
Sbjct 1259  GTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC  1332

Query  310  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  1406

Query  384  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCGACTTCTCAATG  457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1407  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG  1480

Query  458  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  1554

Query  532  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  1628

Query  606  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  1702

Query  680  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG  753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG  1776

Query  754  GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGA  827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGA  1850

Query  828  GGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCA  901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCA  1924

Query  902  TCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAA  975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAA  1998

Query  976  GCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCT  1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCT  2072

Query 1050  GTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCA  1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCA  2146

Query 1124  TCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCC  1197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCC  2220

Query 1198  AATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGA  1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGA  2294

Query 1272  GATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAA--------  1337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 2295  GATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAACCCCAGTC  2368

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2369  ACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTTGGGCTCCTGGGTCA  2442

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2443  GCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGCTGGGGCCCTGCTGA  2516

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2517  GCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGACAGGGACTCTGGGT  2590

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2591  CCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGGCACTGCCTATCAGG  2664

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2665  CTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGGGCGGGGGGCAGCTG  2738

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2739  GGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCCTGTGCTCACAAGCT  2812

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2813  GCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTCGGGGCATCTCAGCT  2886

Query 1338  ---------------------------------------ATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGC  1372
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 2887  GGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGC  2960

Query 1373  AGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAG  1446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  AGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAG  3034

Query 1447  CGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGC  1520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGC  3108

Query 1521  CCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTC  1594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  CCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTC  3182

Query 1595  AGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCC  1668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  AGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCC  3256

Query 1669  TGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGT  1742
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  TGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGT  3330

Query 1743  CGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCT  1816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  CGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCT  3404

Query 1817  GCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCC  1890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  GCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCC  3478

Query 1891  AGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG--------------------  1944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
Sbjct 3479  AGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGGG  3552

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 3553  GCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGAG  3626

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 3627  GCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTGG  3700

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 3701  GGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAAG  3774

Query 1945  --------------------------------------------------------------------------  1944
                                                                                      
Sbjct 3775  TGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCCT  3848

Query 1945  -------------------------------------------------------------------------  1944
                                                                                     
Sbjct 3849  GTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCAC  3921

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.