Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09163
- Subject:
- NR_110349.1
- Aligned Length:
- 4653
- Identities:
- 1920
- Gaps:
- 2445
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTTATGCTGAAGCCGGTGGCCGTGTTCTGGTGGGTGGGCGCCCCGCACAAGGTCGGGCGCTTGTGCCCAGGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCGGGTGGGCCCTCCTGGTGGCCACGGTCCCCTCCAGGCTGCGGGCGCGCCGGCAGTCTCTCCCCCGCCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCCGCCCTTCTTGTCCTTCCCGCTCCTCCCTCCCTCCTTCTCTGCTCTGTTCCCTCCTCCTGCAGTCCGTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCCTTCTCTGCCCAGCCTCTCCACAGCCGAGGCTCCAACACCTGAGGGGACAGAAGCGAAGCGAACGCGGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTCCAACAGGCGGCGGCACGGGACCGCGGGTCCAGGGGTGGCCTCCGCATGGCCCCACCGTGAGAGGGGACC 370
Query 1 ------------------------------------------------------------ATGGAGGAGGACAA 14
|||||.||.||.||
Sbjct 371 CAGCGGCTGGGACACGAGCGCCCTAGGGGCTGGCAGGGACGGGTGGAAACAGTGACCGACATGGATGAAGAGAA 444
Query 15 GCTCTTATCTGCAG-TGCCTGAGGAAGGCGA-TGCCACCC----GTGACCCCGGTCCAGAGCCTGAAGAGGAGC 82
||||..||.|| || |||...||||||| || |||.|||| | ||||.|||.|..|||||.||||||||||
Sbjct 445 GCTCCCATGTG-AGCTGCACAAGGAAGG-GAGTGCTACCCAGGAG-GACCACGGCCTGGAGCCCGAAGAGGAGC 515
Query 83 CAGGGGTCCGGAATGGGA---TGGCCAGTGAGGGCCTGAACAGCAGCCTCTGCAGCCCAGGGCAC-GAGCGAAG 152
|.|||.|||.||||||.| ..|||||.||.|||||||.||||..|.||.||.||||||| | |.|.||||
Sbjct 516 CTGGGCTCCAGAATGGAACAGCAGCCAGCGAAGGCCTGAGCAGCCACATCAGCGGCCCAGG---CGGTGAGAAG 586
Query 153 GGGCACCCCAGCGGACACTGAGGAACCCACGA-AGGACCCAGATGTGGCCTTCCATGGCCTCAGCCTTGGCCTC 225
|||..||.||..||...|||.||...|| ||| |||||||||||||.|.|.|| |||||..||||
Sbjct 587 ----ACCTTAGAGGGTACCATGGAGCCTGTGAGAGG-CCCAGATGTGGCCCTGCCTG------GCCTTAACCTC 649
Query 226 TCTCTCACCAATGGCCTAGCCCTGGGGCCAGACTTGAACATTCTGGAAGATTCAGCGGAGTCCAGGCCCTGGAG 299
|||.|.|||||||||||.||..||||.|.|||...|||||||.||||||||||....||.|..|.|.|||||||
Sbjct 650 TCTTTGACCAATGGCCTGGCTTTGGGACAAGATGGGAACATTTTGGAAGATTCCATAGAATTTAAGACCTGGAG 723
Query 300 GGCTGGCGTGCTGGCAGAGGGGGACAATGCTTCC--AGGAGCCTCTACCCAGATGCTGAGGACCCTCAGCTGGG 371
..|||..|..|||||||.|||..||| ||| .||||.|.||..||||||||||.|||||||||||||||
Sbjct 724 ---AAGCGGACCAGCAGAGGAGGAGGATG--TCCCTGGGAGTCCCTGTCCAGATGCTGGGGACCCTCAGCTGGG 792
Query 372 GTTGGATGGTCCCGGGGAGCCAGATGTGCGGGATGGCTTCAGCGCCACGTTTGAGAAGATTCTGGAGTCAGAGC 445
|.|||||.||||.||.||.||||||||.||.|||||||||||.|||||.||||||||||||||||||||.||||
Sbjct 793 GCTGGATTGTCCTGGCGAACCAGATGTACGTGATGGCTTCAGTGCCACTTTTGAGAAGATTCTGGAGTCGGAGC 866
Query 446 TGCTGCGGGGCACCCAGTACAGCAGCCTCGACTCCCTAGACGGGCTGAGCCTCACGGATGAGAGCGACAGCTGC 519
|.|||||||||||||||||.||||||||.|||||..||||.|.||||||.|||||.||.|||||.||||||||.
Sbjct 867 TACTGCGGGGCACCCAGTATAGCAGCCTGGACTCTTTAGATGTGCTGAGTCTCACTGACGAGAGTGACAGCTGT 940
Query 520 GTCAGCTTCGAGGCCCCCCTCACACCCCTCATCCAGCAGCGGGCCCGTGACAGCCCTGAGCCAGGGGCTGGGTT 593
||||||||||||||||||||.|||||.||||||||||||.||||.||.||.|||||.|||.|.|||||||||.|
Sbjct 941 GTCAGCTTCGAGGCCCCCCTTACACCTCTCATCCAGCAGAGGGCTCGAGATAGCCCCGAGGCCGGGGCTGGGCT 1014
Query 594 GGGCATTGGGGACATGGCGTTTGAGGGGGACATGGGGGCGGCTGGTG---GTGATGGGGAGCTGGGCAGCCCCC 664
|||||.|||||||||||.|..|||.|||||..|||||||..|||||| ||||||||||.||.|||||.||||
Sbjct 1015 GGGCAATGGGGACATGGGGCCTGAAGGGGATCTGGGGGCAACTGGTGGTTGTGATGGGGAACTAGGCAGTCCCC 1088
Query 665 TGCGGCGCTCCATCTCCAGCAGCCGCTCTGAGAATGTCCTGAGCCGCCTGTCTCTCATGGCCATGCCCAATGGA 738
||.||||.||||||||.|||||||||||.|||||||||.||||||.|||||||||||...|..||||||||||.
Sbjct 1089 TGAGGCGGTCCATCTCTAGCAGCCGCTCAGAGAATGTCTTGAGCCACCTGTCTCTCACCTCGGTGCCCAATGGG 1162
Query 739 TTCCATGAAGATGGCCCTCAGGGCCCAGGGGGGGATGAGGATGATGATGAGGAGGACACGGACAAGTTGCTGAA 812
||||||||||||||.|||..||||.|.||.||| ||.|||||.||.||.|||||||||||||||||||||||
Sbjct 1163 TTCCATGAAGATGGGCCTGGGGGCTCGGGAGGG---GACGATGAGGACGATGAGGACACGGACAAGTTGCTGAA 1233
Query 813 CTCAGCCAGTGACCCCAGCCTGAAGGATGGCCTGTCAGACTCAGACTCTGAGCTCAGCAGCTCGGAGGGGTTGG 886
|||.|||||||||.|||||||.||||||||||||||.|||||.|||||.|||||.||||||||.||||||.|||
Sbjct 1234 CTCTGCCAGTGACACCAGCCTTAAGGATGGCCTGTCGGACTCGGACTCGGAGCTGAGCAGCTCTGAGGGGCTGG 1307
Query 887 AGCCTGGTAGTGCAGACCCTCTGGCCAACGGGTGCCAGGGGGTCAGTGAAGCTGCTCATCGGCTGGCACGCCGT 960
|||||||.||..||||.||.||||||||||||||||||||||||||.|||||.||||...|||||||.||.||.
Sbjct 1308 AGCCTGGCAGCACAGATCCACTGGCCAACGGGTGCCAGGGGGTCAGCGAAGCCGCTCGCAGGCTGGCCCGACGG 1381
Query 961 CTCTACCACCTCGAGGGCTTCCAGCGCTGTGATGTGGCCCGGCAGCTGGGCAAGAACAACGAGTTTAGCAGGCT 1034
||||||||.||.||.||.|||||||||||||||||.||.||||||||||||||||||||.|||||.||||||||
Sbjct 1382 CTCTACCATCTTGAAGGTTTCCAGCGCTGTGATGTAGCTCGGCAGCTGGGCAAGAACAATGAGTTCAGCAGGCT 1455
Query 1035 GGTGGCCGGGGAGTACCTCAGTTTCTTCGACTTCTCGGGCTTGACTCTGGACGGAGCACTCAGAACATTCTTGA 1108
|||.||.|||||||||||||||||||||||||||||.|||.|.|||.|||||.|||||||||||||.|||.|||
Sbjct 1456 GGTTGCTGGGGAGTACCTCAGTTTCTTCGACTTCTCAGGCCTCACTTTGGACAGAGCACTCAGAACCTTCCTGA 1529
Query 1109 AGGCCTTCCCGCTGATGGGGGAGACACAAGAGCGTGAGCGGGTCCTCACACACTTCTCCCGCCGGTACTGCCAG 1182
||||||||||||||||||||||||||||.||.||.||.||.|||||.||.||||||||.|||||||||||||||
Sbjct 1530 AGGCCTTCCCGCTGATGGGGGAGACACAGGAACGAGAACGAGTCCTTACCCACTTCTCTCGCCGGTACTGCCAG 1603
Query 1183 TGCAACCCTGATGACAGCACTTCGGAAGATGGGATCCACACGCTCACCTGTGCCCTGATGCTGCTCAACACGGA 1256
||.|||||.||.||||||||.||.||||||||||||||||||||||||||.||||||||||||||||||||.||
Sbjct 1604 TGTAACCCAGACGACAGCACATCAGAAGATGGGATCCACACGCTCACCTGCGCCCTGATGCTGCTCAACACAGA 1677
Query 1257 CCTGCACGGCCACAACATTGGCAAAAAGATGTCCTGTCAGCAATTCATTGCCAACTTGGACCAGCTGAATGATG 1330
||||||.||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||.||||
Sbjct 1678 CCTGCATGGACACAACATTGGCAAGAAGATGTCCTGCCAGCAATTCATTGCCAACTTGGACCAGCTGAACGATG 1751
Query 1331 GCCAAGACTTTGCCAAAGACCTGCTGAAGACCCTTTACAACTCCATCAAGAATGAAAAGCTGGAATGGGCCATT 1404
||||||||||||||||||||||..|||||||.||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1752 GCCAAGACTTTGCCAAAGACCTTTTGAAGACACTTTACAACTCCATCAAGAACGAAAAGCTGGAATGGGCCATT 1825
Query 1405 GATGAGGATGAGCTGAGGAAATCCCTGTCTGAGCTGGTGGATGACAAGTTCGGGACAGGCACGAAGAAGGTGAC 1478
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||||||||
Sbjct 1826 GATGAGGATGAGCTGAGGAAATCCCTGTCTGAGCTGGTGGATGACAAGTTTGGGACGGGCACAAAGAAGGTGAC 1899
Query 1479 GCGAATCCTGGATGGTGGCAACCCCTTCCTGGATGTCCCACAGGCGCTCAGTGCCACCACCTACAAGCACGGCG 1552
.||.|||.|||||||||||||.||.||||||||||||||.|||||.||||..||.||||||||||||||.||||
Sbjct 1900 TCGGATCTTGGATGGTGGCAATCCATTCCTGGATGTCCCGCAGGCTCTCAACGCTACCACCTACAAGCATGGCG 1973
Query 1553 TCCTGACCCGGAAGACTCACGCTGACATGGATGGCAAGAGGACGCCCCGTGGGAGGCGTGGCTGGAAGAAATTC 1626
|.|||||||||||||||||.||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1974 TGCTGACCCGGAAGACTCATGCGGACATGGATGGCAAGAGGACACCCCGTGGGAGGCGTGGCTGGAAGAAATTC 2047
Query 1627 TACGCAGTGCTCAAAGGGACCATCCTGTACCTGCAGAAGGATGAGTACAGGCCTGACAAAGCTCTATCGGAGGG 1700
||.||||||||||||||||||||||||||||||||||
Sbjct 2048 TATGCAGTGCTCAAAGGGACCATCCTGTACCTGCAGA------------------------------------- 2084
Query 1701 TGACCTGAAGAACGCCATTCGCGTGCATCACGCTCTGGCCACCAGGGCCTCTGACTACAGCAAGAAGTCCAACG 1774
|||||.|||||||||||.|||||||||||||
Sbjct 2085 -------------------------------------------AGGGCTTCTGACTACAGTAAGAAGTCCAACG 2115
Query 1775 TGCTGAAGCTTAAGACAGCCGACTGGAGGGTATTCCTCTTCCAGGCACCGAGCAAGGAAGAAATGCTGTCCTGG 1848
||||.|||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.|||.||||||||
Sbjct 2116 TGCTCAAGCTGAAGACAGCAGACTGGAGGGTGTTCCTCTTCCAGGCACCGAGCAAGGAAGAGATGTTGTCCTGG 2189
Query 1849 ATCCTCAGGATCAACCTGGTGGCAGCCATCTTCTCTGCCCCGGCCTTCCCAGCCGCTGTCAGCTCCATGAAGAA 1922
|||||.|||||||||||.||.||.|||||||||||.||.||.|||||||||||.||.|||||||||||||||||
Sbjct 2190 ATCCTGAGGATCAACCTAGTAGCCGCCATCTTCTCAGCACCAGCCTTCCCAGCAGCCGTCAGCTCCATGAAGAA 2263
Query 1923 GTTCTGTCGGCCCCTGCTGCCCTCCTGCACCACCCGCCTCTGCCAGGAGGAGCAACTGCGGTCTCATGAGAATA 1996
|||.|||||.|||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 2264 GTTTTGTCGACCCCTGCTGCCCTCCTGTACCACCCGCCTCTGCCAGGAGGAGCAGCTGCGGTCTCATGAGAATA 2337
Query 1997 AGTTGAGGCAGCTGACTGCGGAGCTGGCCGAACACAGGTGTCACCCAGTCGAGAGGGGCATCAAGTCCAAGGAG 2070
|||||||||||.|||||||.||||||||.||.|||||||||||||||.|.|||||.|||.|||||||.|||||.
Sbjct 2338 AGTTGAGGCAGGTGACTGCAGAGCTGGCTGAGCACAGGTGTCACCCACTGGAGAGAGGCCTCAAGTCTAAGGAA 2411
Query 2071 GCCGAGGAGTACCGGTTGAAGGAGCACTATCTCACCTTCGAGAAAAGCCGTTATGAGACCTATATCCACCTCCT 2144
||.||.||||||||..|||||||.||||||||||||||.||||||||||||||||||||||||||.||||||||
Sbjct 2412 GCAGAAGAGTACCGTCTGAAGGAACACTATCTCACCTTTGAGAAAAGCCGTTATGAGACCTATATTCACCTCCT 2485
Query 2145 GGCTATGAAAATCAAAGTGGGCTCAGATGATCTGGAGCGGATTGAGGCCCGGCTGGCCACTCTGGAAGGGGATG 2218
|||..|||||||||||||||||||||||||.|||||||||||||||||.||||||||.|||.|.||||||||||
Sbjct 2486 GGCCGTGAAAATCAAAGTGGGCTCAGATGACCTGGAGCGGATTGAGGCACGGCTGGCTACTATAGAAGGGGATG 2559
Query 2219 ACCCTTCTCTCCGGAAGACACATTCAAGCCCTGCCCTCAGCCAGGGCCA------TGTGACTGGCAGCAAAACC 2286
||||..||||||||||.|||||.||||||||.||||||||||.|||||| ||||||||||||||||.||
Sbjct 2560 ACCCAGCTCTCCGGAAAACACACTCAAGCCCCGCCCTCAGCCTGGGCCACGGGCCTGTGACTGGCAGCAAAGCC 2633
Query 2287 ACAAAGGATGCCACTGGGCCTGATACT----------------------------------------------- 2313
|||||||||.||.|||...||||||||
Sbjct 2634 ACAAAGGATACCTCTGCATCTGATACTTAGCTAGTGTGGCTGTGCAGGCCCTAGAGGCAGGCAAATGTCCCCAG 2707
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 2708 AGGGGTCAGTGAGCACAATTCCAGCCAGGGATTGCTTGGACCGAGCTCCAGGCAGTTAACAGGCAACCAGAGGG 2781
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 2782 GTGTGGAGAGCCCTGTGCCCAAGGAGATGGAGATGTCACTCATGACGCTGATCTTCTTGCATCCTGGACCATCG 2855
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 2856 CTGGCCTAGACCCTCTCCTAGCCCTGCTGCCCTCCAGTCATGGGGCCAGACATGCTCTAGAGCTGGACAAGTCT 2929
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 2930 GTCACTGTTGCTCTTTCCCAGGCTCCCTTCTCATCAGGCTCCTCCCTCGTCCTGTATTTGTGAGGGTGGGTCTG 3003
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3004 GACTCTGGATTTCAGCTTGGCTATCCACCCTTTCTCCTCTTTCCTCTCAGTTGACCAGCAGCAGGTCTATGGAC 3077
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3078 CACCAGCAACCTTTGCAACCGGCCCAGTTCTCCTGCCTCACGTTGCAATAATCTGGGGCCTAACCTCCACTCAG 3151
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3152 TGCCAAGCTGATTCCACACATGCGTGTGTCCCCTTTCTCCTTTCATCCCCTGAGGCCTCTCCAGCCTCTTTTTT 3225
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3226 ATACAGACACACACACACACACACACACACACACACAATATATATATATATGTAAAGTACTCATTTAAAGAAGG 3299
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3300 GTTGGAAACTACTACCGACTAGAGGGTGAAACCAGAAAAAGGAAAACTCCTGACTTGGAGCCTGGCCTGCTATG 3373
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3374 GAGGAAGCCTGCAGGGGGCCCTGCACTGCTCTGACACTGGATGGGAGGATGAAGACCCTCTGTGTTTTTGCCTT 3447
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3448 TTCCTTTTCCGGCTGACTTGTGACTCACAATCACTTTTCCAGTTGATGCTTTTGGACTGGACAGGATGCCTGCG 3521
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3522 TGTGTGTCACCTCCTCTGTCCCAGGGGTGTCCTGTGGGTTGAGTGCCTTGGGGGCACACCTCTGTTTGCTTTTG 3595
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3596 ATCTTCTTGTGAATACTGCCAAGGTCTCCGAGCTCCAGTGATGCCCTCTGCACAGACCTCCTGGCAGTAAGGAA 3669
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3670 GGACACTACCTAGCTGAGCGTCATCCTCCGGCAAGCCCAGGCTGGGCGGTAGAGTAGGGTTAAGGAAGCTGTTA 3743
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3744 GTTTGTGGTCTCGGGGAGAAGGTAGAGTGACAAGGTTTTGATTAGTGATAATCCTTTCCTTTTCCTAGCAAATC 3817
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3818 AGAAAGCCTAAGCTAAGGACCCAGTTGAGAGTCGAGACACATGTCTCTCACGGGTTGACATCCTTTGAACACCG 3891
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3892 CATCACTTAGAGCAACAAGTGAGTCTCGGGGATAGGCCCCCTTGACACAGCTACCACGAGCCAATCTTGCCTAT 3965
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 3966 TGTTTGGCCAACGGTTTGCAGTCTTGGGTGACATAATCTTTGCAACTAAGTGCTTATCACTTCAAATCCACTCC 4039
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4040 CATCTGATGCAGGGAGCTGGGAGTTTGTGGAGAGGTGTAGTGGGGTTGAAATCCAAATTGCTTAAATTGGATTA 4113
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4114 GCTGAAGTGCGTTTGATAACCAAACCATCTGGCCCCTTTGTTTTGCTCAGGGGAAACAAATGCTCGTTTGAATG 4187
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4188 AGATCAGAAAGGCAATTTAGGGGGCAGCAAAGAGATCTCAGTTCTTTGTCCAGCTGCCTGAAAGTCCTTTGATT 4261
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4262 TTCCAGCCAGTGTCCCACTCTCTGTGTCATGGGTGGGGGACAGTAGAGGTGAAGTTCTTTAGCCTCAGACACGC 4335
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4336 GTGATTCCCCAAGCACTAGTTGTGCCTCCCATCAGTAAAGACATTTTTTAGTTCGCTTCCTTAATTGTATAATT 4409
Query 2314 -------------------------------------------------------------------------- 2313
Sbjct 4410 CTTTATTTGTAAATTATATACATGTACTACTGTACTAAAATATTATGTACATTATAAAACATACACAAAAATAG 4483
Query 2314 ----------------------------------------------------------------- 2313
Sbjct 4484 AAATTTAAAAAAGATGAGATGAAAATAAATCTAAATCAAAGTTCTAAAAAAAAAAAAAAAAAAAA 4548
