Construct: ORF ccsbBroad304_09163

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004080.1_s304c1, BRDN0000409307
Derived from:
ccsbBroadEn_09163
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSD2 (84249)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09163
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84249 PSD2 pleckstrin and Sec7 domain ... NM_032289.4 99.9% 100% 633A>G
2 human 84249 PSD2 pleckstrin and Sec7 domain ... XM_017009976.1 99.9% 100% 633A>G
3 human 84249 PSD2 pleckstrin and Sec7 domain ... XM_017009977.1 99.9% 100% 633A>G
4 human 84249 PSD2 pleckstrin and Sec7 domain ... XM_011537696.2 97.4% 97.4% 1_60del;693A>G
5 mouse 74002 Psd2 pleckstrin and Sec7 domain ... NM_028707.4 85.2% 87.8% (many diffs)
6 mouse 74002 Psd2 pleckstrin and Sec7 domain ... XM_017317995.1 85.1% 87.7% (many diffs)
7 mouse 74002 Psd2 pleckstrin and Sec7 domain ... NM_001289602.1 84.8% 87.3% (many diffs)
8 mouse 74002 Psd2 pleckstrin and Sec7 domain ... NR_110349.1 41.2% (many diffs)
9 mouse 74002 Psd2 pleckstrin and Sec7 domain ... XR_001782394.1 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2379
ORF length:
2313
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggaggacaag ctcttatctg cagtgcctga ggaaggcgat gccacccgtg
121accccggtcc agagcctgaa gaggagccag gggtccggaa tgggatggcc agtgagggcc
181tgaacagcag cctctgcagc ccagggcacg agcgaagggg caccccagcg gacactgagg
241aacccacgaa ggacccagat gtggccttcc atggcctcag ccttggcctc tctctcacca
301atggcctagc cctggggcca gacttgaaca ttctggaaga ttcagcggag tccaggccct
361ggagggctgg cgtgctggca gagggggaca atgcttccag gagcctctac ccagatgctg
421aggaccctca gctggggttg gatggtcccg gggagccaga tgtgcgggat ggcttcagcg
481ccacgtttga gaagattctg gagtcagagc tgctgcgggg cacccagtac agcagcctcg
541actccctaga cgggctgagc ctcacggatg agagcgacag ctgcgtcagc ttcgaggccc
601ccctcacacc cctcatccag cagcgggccc gtgacagccc tgagccaggg gctgggttgg
661gcattgggga catggcgttt gagggggaca tgggggcggc tggtggtgat ggggagctgg
721gcagccccct gcggcgctcc atctccagca gccgctctga gaatgtcctg agccgcctgt
781ctctcatggc catgcccaat ggattccatg aagatggccc tcagggccca gggggggatg
841aggatgatga tgaggaggac acggacaagt tgctgaactc agccagtgac cccagcctga
901aggatggcct gtcagactca gactctgagc tcagcagctc ggaggggttg gagcctggta
961gtgcagaccc tctggccaac gggtgccagg gggtcagtga agctgctcat cggctggcac
1021gccgtctcta ccacctcgag ggcttccagc gctgtgatgt ggcccggcag ctgggcaaga
1081acaacgagtt tagcaggctg gtggccgggg agtacctcag tttcttcgac ttctcgggct
1141tgactctgga cggagcactc agaacattct tgaaggcctt cccgctgatg ggggagacac
1201aagagcgtga gcgggtcctc acacacttct cccgccggta ctgccagtgc aaccctgatg
1261acagcacttc ggaagatggg atccacacgc tcacctgtgc cctgatgctg ctcaacacgg
1321acctgcacgg ccacaacatt ggcaaaaaga tgtcctgtca gcaattcatt gccaacttgg
1381accagctgaa tgatggccaa gactttgcca aagacctgct gaagaccctt tacaactcca
1441tcaagaatga aaagctggaa tgggccattg atgaggatga gctgaggaaa tccctgtctg
1501agctggtgga tgacaagttc gggacaggca cgaagaaggt gacgcgaatc ctggatggtg
1561gcaacccctt cctggatgtc ccacaggcgc tcagtgccac cacctacaag cacggcgtcc
1621tgacccggaa gactcacgct gacatggatg gcaagaggac gccccgtggg aggcgtggct
1681ggaagaaatt ctacgcagtg ctcaaaggga ccatcctgta cctgcagaag gatgagtaca
1741ggcctgacaa agctctatcg gagggtgacc tgaagaacgc cattcgcgtg catcacgctc
1801tggccaccag ggcctctgac tacagcaaga agtccaacgt gctgaagctt aagacagccg
1861actggagggt attcctcttc caggcaccga gcaaggaaga aatgctgtcc tggatcctca
1921ggatcaacct ggtggcagcc atcttctctg ccccggcctt cccagccgct gtcagctcca
1981tgaagaagtt ctgtcggccc ctgctgccct cctgcaccac ccgcctctgc caggaggagc
2041aactgcggtc tcatgagaat aagttgaggc agctgactgc ggagctggcc gaacacaggt
2101gtcacccagt cgagaggggc atcaagtcca aggaggccga ggagtaccgg ttgaaggagc
2161actatctcac cttcgagaaa agccgttatg agacctatat ccacctcctg gctatgaaaa
2221tcaaagtggg ctcagatgat ctggagcgga ttgaggcccg gctggccact ctggaagggg
2281atgacccttc tctccggaag acacattcaa gccctgccct cagccagggc catgtgactg
2341gcagcaaaac cacaaaggat gccactgggc ctgatactta cccaactttc ttgtacaaag
2401tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2461gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.