Nucleotide Global Alignment

Description

• Query: ccsbBroad304_09284
• Subject: XR_429119.4
• Aligned Length: 4220
• Identities: 2448
• Gaps: 1771

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGCCGTCCGTTGTGCGCCTAGGGGCCAGTTTTCTTTCCAGCCTCCCCGGCCGGAGTGGGTTCCAGCTTTTCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCTGGGGAGGGCATTTATCCCACCTCCGCTATTTCAGCTGCCAGAGGGGAGGCAAGGTGTGGGGAAGTTTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTCCCGGGCGAAGAAGCTCTGCGGAACTGTCATTTTCCGGAACTGGATGCTTGCTTCCTGGCGGGGTTCTGAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGAACACCGCGGGGCAAGATGGCGGTAGTGCGTCGGCTGCTGCCCCGGGTCTGGCAGAACTCGGGTGTTTTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTGAGACAGTGGCAGCTGCGGCCCCGACCCCAAGTGCGGGGACCTCCGGCGAATAAAGGTCGGCCTGCGGGTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCCGGTAGGGCCTGCGGTCCGGCCTGCGGGAGAACTGGGTCGTCAGTCCTCCGAGTGGTGGGGCTGGGGACTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGAGGGAGTTGGCTCTAGGGCACAGTCCCTGCCTGGCCAGGTCGGAGGAACAAGTGCTGGGATCTGGCGTGTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTCCAGGGGCTCTTTCCGCGGCCCTTTCCACCTCTTTTCACTTTGGGGACGGTAGGCCTTTATAAACGGACTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATGCTGGGTGATTTGTTCCTGTGGTTGTTGATGCCGAGGAAAGACTCTGGGCCCCAGGACTCACCTAAACTGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTCGAATACTGTTCGCTCGCTGTGTGACCTTGGAAAAAATAACAAGCTTTTCTGAAGTGAGAAGCTGTTCTCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCACGAGTCCTGTGCAAGATCACTAATGATTACCTGGCATTTCTGCGACACAGGCAGGTCCTCAGGGTTTGTG  814

Query    1  -------------ATGTTCACCCTGTCTCAGACCTCGAGAGCATGGTTCATCGATAGAGCCCGTCAGGCACGAG  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAAGTTTGCAAACATGTTCACCCTGTCTCAGACCTCGAGAGCATGGTTCATCGATAGAGCCCGTCAGGCACGAG  888

Query   62  AAGAAAGGCTTGTGCAGAAGGAACGGGAGCGGGCAGCTGTTGTGATCCAGGCCCATGTCCGGAGTTTTCTCTGT  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGAAAGGCTTGTGCAGAAGGAACGGGAGCGGGCAGCTGTTGTGATCCAGGCCCATGTCCGGAGTTTTCTCTGT  962

Query  136  CGGAGTCGACTGCAGAGAGATATCAGGAGAGAGATTGATGACTTTTTTAAAGCAGATGACCCTGAGTCCACTAA  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CGGAGTCGACTGCAGAGAGATATCAGGAGAGAGATTGATGACTTTTTTAAAGCAGATGACCCTGAGTCCACTAA  1036

Query  210  AAGAAGTGCACTTTGTATTTTCAAGATTGCCAGGAAACTGCTGTTCCTATTCAGAATCAAAGAGGATAATGAGA  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGAAGTGCACTTTGTATTTTCAAGATTGCCAGGAAACTGCTGTTCCTATTCAGAATCAAAGAGGATAATGAGA  1110

Query  284  GATTTGAGAAGTTGTGTCGCAGCATCCTGAGCAGCATGGATGCTGAGAATGAGCCTAAGGTGTGGTATGTGTCC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATTTGAGAAGTTGTGTCGCAGCATCCTGAGCAGCATGGATGCTGAGAATGAGCCTAAGGTGTGGTATGTGTCC  1184

Query  358  CTGGCTTGTTCTAAGGACCTCACCCTCCTTTGGATTCAACAGATCAAGAACATTTTGTGGTACTGCTGTGATTT  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CTGGCTTGTTCTAAGGACCTCACCCTCCTTTGGATTCAACAGATCAAGAACATTTTGTGGTACTGCTGTGATTT  1258

Query  432  TCTCAAGCAGCTCAAGCCTGAAATCCTGCAGGACTCCCGACTCATCACCCTGTACCTCACGATGCTTGTCACCT  505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTCAAGCAGCTCAAGCCTGAAATCCTGCAGGACTCCCGACTCATCACCCTGTACCTCACGATGCTTGTCACCT  1332

Query  506  TCACAGACACTTCAACGTGGAAAATTCTTCGGGGAAAAGGTGAAAGTCTTCGACCAGCGATGAACCACATTTGT  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TCACAGACACTTCAACGTGGAAAATTCTTCGGGGAAAAGGTGAAAGTCTTCGACCAGCGATGAACCACATTTGT  1406

Query  580  GCAAATATAATGGGACATCTCAACCAGCATGGATTTTATTCTGTGCTGCAGATATTGTTAACCCGTGGCCTGGC  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCAAATATAATGGGACATCTCAACCAGCATGGATTTTATTCTGTGCTGCAGATATTGTTAACCCGTGGCCTGGC  1480

Query  654  AAGACCCCGTCCTTGTCTATCCAAAGGCACTTTAACAGCAGCTTTTTCTCTAGCGTTACGCCCTGTGATTGCTG  727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAGACCCCGTCCTTGTCTATCCAAAGGCACTTTAACAGCAGCTTTTTCTCTAGCGTTACGCCCTGTGATTGCTG  1554

Query  728  CACAGTTCTCAGACAATCTGATTCGGCCGTTCCTCATCCACATCATGTCTGTGCCTGCTCTGGTGACTCATCTC  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CACAGTTCTCAGACAATCTGATTCGGCCGTTCCTCATCCACATCATGTCTGTGCCTGCTCTGGTGACTCATCTC  1628

Query  802  AGCACAGTGACCCCTGAGCGCCTCACTGTTTTAGAATCCCATGACATGCTTCGTAAATTCATCATATTTTTAAG  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGCACAGTGACCCCTGAGCGCCTCACTGTTTTAGAATCCCATGACATGCTTCGTAAATTCATCATATTTTTAAG  1702

Query  876  AGACCAAGATCGATGCCGTGATGTATGTGAAAGTTTAGAAGGATGCCATACGCTTTGTCTAATGGGCAACCTCC  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGACCAAGATCGATGCCGTGATGTATGTGAAAGTTTAGAAGGATGCCATACGCTTTGTCTAATGGGCAACCTCC  1776

Query  950  TACACTTGGGCTCCCTCAGCCCCAGAGTGTTAGAGGAGGAGACAGATGGGTTCGTGAGTTTGCTCACCCAGACG  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TACACTTGGGCTCCCTCAGCCCCAGAGTGTTAGAGGAGGAGACAGATGGGTTCGTGAGTTTGCTCACCCAGACG  1850

Query 1024  CTGTGCTACTGTCAGAAGTATGTGTCTCAGAAGAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTGGTT  1097
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CTGTGCTACTGTCGGAAGTATGTGTCTCAGAAGAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTGGTT  1924

Query 1098  CTCCCAATCTGTGGATTATGGCCTTAACGAGTCAATGCACTTGATCACCAAACAGCTGCAGTTCTTGTGGGGGG  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CTCCCAATCTGTGGATTATGGCCTTAACGAGTCAATGCACTTGATCACCAAACAGCTGCAGTTCTTGTGGGGGG  1998

Query 1172  TGCCTCTGATCCGGATCTTCTTCTGTGACATCCTGAGCAAGAAGCTACTGGAGAGCCAGGAGCCAGCCCACGCA  1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGCCTCTGATCCGGATCTTCTTCTGTGACATCCTGAGCAAGAAGCTACTGGAGAGCCAGGAGCCAGCCCACGCA  2072

Query 1246  CAGCCAGCATCCCCTCAGAATGTGCTCCCAGTGAAGAGTCTCCTAAAGCGTGCTTTTCAAAAGTCGGCATCAGT  1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAGCCAGCATCCCCTCAGAATGTGCTCCCAGTGAAGAGTCTCCTAAAGCGTGCTTTTCAAAAGTCGGCATCAGT  2146

Query 1320  CCGGAATATTCTCAGGCCTGTCGGGGGTAAACGGGTCGACTCTGCAGAAGTCCAGAAGGTTTGCAACATCTGTG  1393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CCGGAATATTCTCAGGCCTGTCGGGGGTAAACGGGTCGACTCTGCAGAAGTCCAGAAGGTTTGCAACATCTGTG  2220

Query 1394  TCCTCTACCAGACCTCGCTGACAACTCTCACACAGATTCGGCTGCAGATACTCACAGGTCTCACTTACCTTGAT  1467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TCCTCTACCAGACCTCGCTGACAACTCTCACACAGATTCGGCTGCAGATACTCACAGGTCTCACTTACCTTGAT  2294

Query 1468  GACCTGCTTCCCAAACTGTGGGCATTTATCTGTGAGCTCGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATG  1541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GACCTGCTTCCCAAACTGTGGGCATTTATCTGTGAGCTCGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATG  2368

Query 1542  CCTGAACAATGACACTGAAGAGTCCAAGCAACTCTTGGCCATGCTGATGCTGTTCTGTGACTGTTCGCGGCACC  1615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCTGAACAATGACACTGAAGAGTCCAAGCAACTCTTGGCCATGCTGATGCTGTTCTGTGACTGTTCGCGGCACC  2442

Query 1616  TCATCAC-------------------------------------------------------------------  1622
            |||||||                                                                   
Sbjct 2443  TCATCACGTTGGTGAAGAATTATAAGATACAATGGACCTCAGGCAGTTATGTTCAGGCTGGAAGACTTTAGCCG  2516

Query 1623  --------------------------------------------------------------------------  1622
                                                                                      
Sbjct 2517  GAGAGGATCAGGGACATGTAGGTGGCAGATTGGGTGAGGATCATGGAAGAACTCACTGAGCAGTTGGAGGCAAG  2590

Query 1623  ------------------------------------------------AATCCTTGATGACATTGAAGTTTATG  1648
                                                            ||||||||||||||||||||||||||
Sbjct 2591  AGCAGGGGTCTAGCTGCTGGTGAAGACATCCTTAATCACTGGATGGGGAATCCTTGATGACATTGAAGTTTATG  2664

Query 1649  AAGAACAGATTTCATTCAAACTGGAAGAGCTGGTCACTATCTCCTCTTTCCTGAATTCTTTTGTGTTTAAGATG  1722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  AAGAACAGATTTCATTCAAACTGGAAGAGCTGGTCACTATCTCCTCTTTCCTGAATTCTTTTGTGTTTAAGATG  2738

Query 1723  ATCTGGGATGGAATTGTAGAGAACGCCAAGGGTGAGACCTTGGAGCTGTTCCAGTCTGTCCACGGGTGGCTTAT  1796
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  ATCTGGGATGGAATTGTAGAGAACGCCAAGGGTGAGACCTTGGAGCTGTTCCAGTCTGTCCACGGGTGGCTTAT  2812

Query 1797  GGTGCTGTACGAGCGGGACTGCCGGCGGCGCTTCACCCCCGAGGACCACTGGCTGCGAAAGGATCTCAAACCTA  1870
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  GGTGCTGTACGAGCGGGACTGCCGGCGGCGCTTCACCCCCGAGGACCACTGGCTGCGAAAGGATCTCAAACCTA  2886

Query 1871  GCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGCACAGTTGATCCTGCAGTACATCCCACATGTCATC  1944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGCACAGTTGATCCTGCAGTACATCCCACATGTCATC  2960

Query 1945  CCTCACAAAAACAGAGTTCTACTGTTTCGAACCATGGTTACCAAGGAGAAGGAGAAACTGGGGCTGGTGGAAAC  2018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  CCTCACAAAAACAGAGTTCTACTGTTTCGAACCATGGTTACCAAGGAGAAGGAGAAACTGGGGCTGGTGGAAAC  3034

Query 2019  CAGCTCTGCCTCCCCGCATGTCACTCACATCACCATCCGCCGGTCCAGGATGCTGGAGGACGGCTACGAGCAGC  2092
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CAGCTCTGCCTCCCCGCATGTCACTCACATCACCATCCGCCGGTCCAGGATGCTGGAGGACGGCTACGAGCAGC  3108

Query 2093  TTAGGCAGCTCTCCCAGCACGCCATGAAGGGGGTCATCCGTGTGAAGTTTGTCAATGACCTCGGGGTGGACGAA  2166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  TTAGGCAGCTCTCCCAGCACGCCATGAAGGGGGTCATCCGTGTGAAGTTTGTCAATGACCTCGGGGTGGACGAA  3182

Query 2167  GCAGGGATTGATCAAGACGGTGTTTTTAAGGAGTTCTTGGAAGAGATCATCAAGAGAGTTTTTGACCCAGCACT  2240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  GCAGGGATTGATCAAGACGGTGTTTTTAAGGAGTTCTTGGAAGAGATCATCAAGAGAGTTTTTGACCCAGCACT  3256

Query 2241  CAATCTGTTCAAGACAACCAGTGGGGATGAGAGGCTGTACCCCTCACCCACATCCTACATCCATGAGAATTACC  2314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  CAATCTGTTCAAGACAACCAGTGGGGATGAGAGGCTGTACCCCTCACCCACATCCTACATCCATGAGAATTACC  3330

Query 2315  TGCAGCTCTTCGAGTTTGTGGGGAAGATGCTGGGGAAGGCTGTGTATGAGGGAATTGTGGTGGACGTGCCATTT  2388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  TGCAGCTCTTCGAGTTTGTGGGGAAGATGCTGGGGAAGGCTGTGTATGAGGGAATTGTGGTGGACGTGCCATTT  3404

Query 2389  GCATCCTTCTTCCTGAGCCAACTGCTTGGGCACCACCACAGCGTCTTCTATAGCTCGGTGGATGAACTGCCTTC  2462
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct 3405  GCATCCTTCTTCCTGAGCCAACTGCTTGGGCACCACCACAGCGTCTTCTATAGCTCGGTGG-------------  3465

Query 2463  TCTGGACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGCGCTATGATGGGGACATCACTGACCTGGGCCTGA  2536
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2537  CGCTGTCTTACGACGAGGACGTCATGGGTCAGCTTGTTTGCCATGAACTGATTCCTGGAGGGAAGACCATTCCT  2610
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2611  GTTACAAATGAAAATAAAATTAGCTACATCCATCTGATGGCACATTTTCGAATGCACACTCAAATAAAAAACCA  2684
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2685  AACAGCTGCCCTCATTAGCGGATTCCGTTCCATTATCAAACCCGAGTGGATCCGAATGTTCTCAACTCCTGAAC  2758
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2759  TGCAGCGTCTCATCTCTGGCGACAATGCTGAGATTGATCTGGAAGATTTAAAGAAGCACACAGTCTACTACGGT  2832
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2833  GGTTTCCATGGAAGTCACAGAGTCATCATCTGGCTCTGGGATATTCTGGCCTCCGACTTCACACCGGATGAGAG  2906
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2907  AGCTATGTTTCTGAAGTTCGTGACCAGCTGCTCCAGACCCCCGCTCCTGGGATTCGCCTACCTCAAGCCTCCAT  2980
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 2981  TCTCCATCCGCTGCGTGGAGGTGTCGGACGATCAGGACACCGGGGACACTCTGGGCAGCGTCCTCCGGGGCTTC  3054
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 3055  TTCACCATCCGCAAGCGGGAGCCAGGCGGCCGCCTGCCCACCTCCTCCACCTGCTTCAACCTGCTCAAGCTGCC  3128
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 3129  CAACTACAGCAAGAAGAGCGTCCTCCGCGAGAAGCTGCGCTACGCCATCAGCATGAACACGGGCTTTGAACTCT  3202
                                                                                      
Sbjct 3466  --------------------------------------------------------------------------  3465

Query 3203  CC  3204
              
Sbjct 3466  --  3465