Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09588
- Subject:
- XR_002958675.1
- Aligned Length:
- 4498
- Identities:
- 860
- Gaps:
- 3537
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCATCCTATGAATTGGGTCATTCATGTCCTACCCAGCTAAAACAGAGGCCAGGAGCCAGGGAGGAAAAGCAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGCCACACAACATTGTTTCCGAAATGGACTTCTCTGCAAGCCTGACTCCTGAGACTGTGCATTGTACCCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AACCAGCTTTATCCATAGCTTCTGCGATAAATGGCTGTAAGTCTTGGACTCCTTGCTCCAAACGCAGCGACTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAATAGAACCTCCCAGCTCCCAGCCCTTCCTAGTGCCCATGGGCTTTACATAGGGCAAGAGAACATTTCTCCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTATAATTGCCATCTCTTTGCTCTCTCAACATGGTGAACACCATCCGGACTCCGTGTATGTCTCAAATTACAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCTTTCTTTGCAAATGAAATATGAAATTTAGAGGCTCTTCTAAACACTTTAAATTTGATTTGACATTTTCAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCATGCTGTGGCCTCCATAGAAGATGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCAGGCCAGGTGCCCACATGGCAGGCATTTATTTTCTCACAGATCTGGAAGCTGCAGGTCCAACTTCGAGGGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGTGGGGTTGTTTCCTCTGAGGCCGCTCCTTCTGGCTGGCAGGGAGTCTCTTCCAGCCGTGTCCTCTGTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTTCCTCTATGCACACGCACCTCTGGGATCTCTCTGCCTCCAAATATCATCTTTTTTTTTTTTTTTTTTTTTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTGAGACAGAGTGTTGCTCCTCTTGTCCAGGCTGGAATGCAATGGCACAATCTGGACTCACTGCAACCTCCGCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCCCGAGTTTAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAAAAGGCATGCATCACCACACCTGGTTAATTTTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAGTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTCTCAGCCTCTCCAAGTGCTGGGATTACAGGCATCAGCCACTATGCCCGGCTGGGATCATATGTTCCACACAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTTTGTTCAATAAGCATGGACTGCAACCACCTACATGAATATTCATAGCTCCTCCTGTAGCCTGTTGAATATGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATGTTTAGCCAACCTCTTCAGCATAAAGCTCCTGCCCAAACCCCTCCTGCTCCTAAATGTCTGTCTCTGGTGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AACCAGAGGCTGCTCTTCCCAGGCTGCTGGATGGCTACCTTGCAGGCTGTCACCCTTAACAAGAAATAAAGTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCTTTGCAAATGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGA 2072
Query 1 -------------------------------------------------ATGAATCCACAGATCAGAAATCCGA 25
|||||.||.||..|||||||..|..
Sbjct 2073 AACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAG 2146
Query 26 TGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACCCATCCTCTATGGTCGGAGCTACACT 99
|||||||.|||||||||||||||||||.|.||||||||.|.||...|||||||||.|.|.|||||| .|||..|
Sbjct 2147 TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGA-ATACCGT 2219
Query 100 -TGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCC 172
|||||||||||.||||||||||.||| |||.|.|||||..|.||.||.||||.||..|.||||||||||||
Sbjct 2220 CTGGCTGTGCTACGAAGTGAAAACAAA---GGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCC 2290
Query 173 CGGTACTACCCAAACGTCAGTCGAATCACAGGCAGGAGGTGTATTTCCGGTTTGAGAACCACGCAGAAATGTGC 246
|||||||||.||.|..||||.|||||||||||||||||
Sbjct 2291 ------------------------------------AGGTGTATTCCCAGCCTGAGCACCACGCAGAAATGTGC 2328
Query 247 TTCTTATCTTGGTTCTGTGGCAACCGACTGCCTGCTAACAGGCGCTTCCAGATCACCTGGTTTGTATCATGGAA 320
|||.|.|||||||||||||||||||..|||||||||.|||.|.|.|||||||||||||||||||||||.||||.
Sbjct 2329 TTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGAC 2402
Query 321 CCCCTGCCTGCCCTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGCACCCCAATGTCACCCTGACCATCTCTG 394
||||||||.|..||||||||.||||.||.||.|||||.||||||||||||||||||||||||||||||||||.|
Sbjct 2403 CCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTGGCTGAGCACCCCAATGTCACCCTGACCATCTCCG 2476
Query 395 CCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGGGTGCTCCTCAGGCTGCATAAGGCAGGGGCCCGT 468
||||||||||||||||||||.||||.|||||||..||..|||.||||..|||||||..|.|||||||||||||.
Sbjct 2477 CCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGC 2550
Query 469 GTGAAGATCATGGACTATGAAGACTTTGCATACTGCTGGGAAAACTTTGTGTGCAATGAAGGTCAGCCATTCAT 542
||||||||.||||||.|||||||.||||||||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 2551 GTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAGTGAAGGTCAGCCATTCAT 2624
Query 543 GCCTTGGTACAAATTCGATGACAATTATGCATCCCTGCACCGCACGCTAAAGGAGATTCTCAGAAACCCGATGG 616
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 2625 GCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCT-------------- 2684
Query 617 AGGCAATGTACCCACACATATTCTACTTCCACTTTAAAAACCTACTGAAAGCCTGTGGTCGGAACGAAAGCTGG 690
Sbjct 2685 -------------------------------------------------------------------------- 2684
Query 691 CTGTGCTTCACCATGGAAGTTACAAAGCACCACTCAGCTGTCTTCCGGAAGAGGGGCGTCTTCCGAAACCAGGT 764
|||||
Sbjct 2685 ---------------------------------------------------------------------CAGGT 2689
Query 765 GGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGACATACTGTCTCCTAACA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690 GGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGACATACTGTCTCCTAACA 2763
Query 839 CAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTG 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2764 CAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTG 2837
Query 913 GCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTGCTATTTCTGGGATACAGATTACCAGGA 986
||||||||||||||||||||||||||||||||||||||||||||||.|||.|||||||||||||||||||||||
Sbjct 2838 GCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTACTACTTCTGGGATACAGATTACCAGGA 2911
Query 987 GGGGCTCTGCAGCCTGAGTCAGGAAGGGGCCTCCGTGAAGATCATGGGCTACAAAGATTTTGTATCTTGTTGGA 1060
|||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||..||.|||||||.
Sbjct 2912 GGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGATCATGGGCTACAAAGATTTTAAATATTGTTGGG 2985
Query 1061 AAAACTTTGTGTACAGTGATGATGAGCCATTCAAGCCTTGGAAGGGACTACAAACCAACTTTCGACTTCTGAAA 1134
|||||||||||||||.|||||||||||||||||||||||||||.||||||.||..||||||||.|.|.|||.|.
Sbjct 2986 AAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGGAAAGGACTAAAATACAACTTTCTATTCCTGGAC 3059
Query 1135 AGAAGGCTACGGGAGATTCTCCAG-------------------------------------------------- 1158
||.|.|||.|.||||||||||.||
Sbjct 3060 AGCAAGCTGCAGGAGATTCTCGAGTGAGGGGTCTCCCCGGGCCTCATGGTCTGTCTCCTCTAGCCTCCTGCTCA 3133
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3134 TGTTGTGCAGGCCTCCCCTCCATCCTGGACCAGCTGTGCTTTTGCCTGGTCATCCTGAGCCCCTCCTGGCCTCA 3207
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3208 GGGCCATTCCATAGTGCTCCCCTGCCTCACCACCTCCTCTCCGCTCTCCCAGGCTCTTCCTGCAGAGGCCTCTT 3281
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3282 TCTGCCTCCATGGCTATCCATCCACCCACCAAGACCCTGTTCCCTGAGCCTGCATGCCCCTAACCTGCCTTTTC 3355
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3356 CCATCTCCCCAGCATAACCTAATATTTTTTTTTTTTTTTTGAGACGGAATTTCGCTCTGTCACCCAGACTGGAG 3429
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3430 TGCAATGGCTTGATCTTGGCTCACTGCAAACTCTGCCTACCAGGTTCAAGCGATTCTCCTGCCTCCGCCTCCCG 3503
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3504 AGTAGCTGGAATTACAGACGCCTGCCACCACGCACAGCTAACTTTTTTTTTTTTTGTATTTTTAGTAGTGACTG 3577
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3578 GGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTATCTCAGCCTCCCAAAGT 3651
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3652 GCTGGGATTACAGGCGTGAGCCACTGGCCCGGCGGCACAACCAAATCTTATTAAACTCACCCTAGGCTGGCCGC 3725
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3726 GGTGACTCATGCCTATAATCCCCCAGCAATTTGGGAGGCAGAGGTGAGAGAATCGCTTGAGCCCAGGAATTCGA 3799
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3800 GACCAGCCTGGGCCACATGACAAAGCCCCATCTCTACAAAAAAATTACAAAAAAAAAAAAAACAGGTGTGGTGG 3873
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3874 CATGCACCTGTAGTTGAAGCTACTTGGAAGGATGAAGTGGGAGGATTGCTTGAGCCGGGGAGGTGGAGGCTGCA 3947
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 3948 GTGAACTGAGATCACGTCACTGAACTCCAGTCTGAGCAACAGATCGAGACCCTGCCTGAAAATAAATCAATAAA 4021
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 4022 TAAACTCAACCGAAATGGGTATGAAAGTTGAAATGGGTATGTAAGTTGAAAACCAGAAGTTTTGAGAAACATCC 4095
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 4096 TTTGTTAACTTTCATCCTACAAATTGGGTCATTCATGTCCTACGCAGCTAAAACAGAGCCCAGGAGCCAGGGAG 4169
Query 1159 -------------------------------------------------------------------------- 1158
Sbjct 4170 GAAAAGCAGTCAGGCCACACACCATTGCTCCCAAAATGGACTTCTCTGCAAGCCTGACTCCTGAAACTGTGCAT 4243
Query 1159 ---------------------------------------------------------- 1158
Sbjct 4244 TGTACCCTGAAACCAGCTTTATCCATAGCTTCTGCAATAAATGGCTGTAAGTCTTGGA 4301
