Nucleotide Global Alignment

Description

• Query: ccsbBroad304_09805
• Subject: NM_001363781.1
• Aligned Length: 1167
• Identities: 505
• Gaps: 609

Alignment

Query    1  ATGAAGCCTCACTTCAGAAACACAGTGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CATCCTTTCTCGTCGGAATACCGTCTGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCCCCGTTTGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACGCAAAGATCTTTCGAGGCCAGGTGTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGTGGCGAAGCTGGCCGAATTCCTGTCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGTGTGAAGATTATGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTCAGAAACCCGATGGAGGCAATGTATCCAC  592
                       |||.||       ||.||        ||     |||||||.|||||||||...|||||||.|.
Sbjct    1  -----------ATGAAT-------CCACA--------GA-----TCAGAAATCCGATGGAGCGGATGTATCGAG  43

Query  593  ACATATTCTACTTCCACTTTAAAAACCTACGCAAAGCCTATGGTCGGAACGAAAGCTGGCTGTGCTTCACCATG  666
            |||.|||||||..|.|||||.|||||..||.||....|||||||||||.|.|.|..||||||||||     || 
Sbjct   44  ACACATTCTACGACAACTTTGAAAACGAACCCATCCTCTATGGTCGGAGCTACACTTGGCTGTGCT-----AT-  111

Query  667  GAAGTTG----TAAAGCA----CCACTCACCTATCTCCT---GGA-AGAGGGGCGTCTTCCGAAACC-------  721
            |||| ||    ||||| |    ||.||||  .|||||||   ||| |.||||  |||||.|||..||       
Sbjct  112  GAAG-TGAAAATAAAG-AGGGGCCGCTCA--AATCTCCTTTGGGACACAGGG--GTCTTTCGAGGCCCGGTACT  179

Query  722  -----------------------------AGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCT  766
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  ACCCAAACGTCAGTCGAATCACAGGCAGGAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCT  253

Query  767  CTTGGTTCTGTGACGACATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGC  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  254  CTTGGTTCTGTGACGACATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGC  327

Query  841  CCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCG  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  CCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCG  401

Query  915  CCTCTACTACTTCTGGGATACAGATTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGA  988
            |||||.||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct  402  CCTCTGCTACTTCTGGGATACAGATTACCAGGAGGGGCTCTGCAGCCTGAGTCAGGAAGGGGCCTCCGTGAAGA  475

Query  989  TCATGGGCTACAAAGATTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGG  1062
            ||||||||||||||||||||..||.|||||||.|||||||||||||||.|||||||||||||||||||||||||
Sbjct  476  TCATGGGCTACAAAGATTTTGTATCTTGTTGGAAAAACTTTGTGTACAGTGATGATGAGCCATTCAAGCCTTGG  549

Query 1063  AAAGGACTAAAATACAACTTTCTATTCCTGGACAGCAAGCTGCAGGAGATTCTCGAG  1119
            ||.||||||.||..||||||||.|.|.|||.|.||.|.|||.|.||||||||||.||
Sbjct  550  AAGGGACTACAAACCAACTTTCGACTTCTGAAAAGAAGGCTACGGGAGATTCTCCAG  606