Nucleotide Global Alignment

Description

• Query: ccsbBroad304_09811
• Subject: NM_001316919.1
• Aligned Length: 847
• Identities: 370
• Gaps: 443

Alignment

Query   1  ATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTAATAG  74
                                                                                     
Sbjct   1  --------------------------------------------------------------------------  0

Query  75  ACCAAGAAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGCAATCATCG  148
                                                                                     
Sbjct   1  --------------------------------------------------------------------------  0

Query 149  TCTGTCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTTACAATTATCTTGTTGTTGTCGTGT  222
                                                       |||||.||||||||||||||||||||||||
Sbjct   1  --------------------------------------------ATGGTGACAATTATCTTGTTGTTGTCGTGT  30

Query 223  GACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGA  296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  31  GACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGA  104

Query 297  TGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAAT  370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105  TGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAAT  178

Query 371  CAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCC  444
           ||||||||||||||||||||||||||||||||.||||||||||||||||||||||.||||||||||||||||||
Sbjct 179  CAAGAATCTTTTGGTTGGGACTTATTGCCTGTCCAGTACTGTGGGTGATATTTGCTTTTAGTGCACTCTTCTCC  252

Query 445  TTCACAGTAAAGTGGCTGAGACGGTCTCGCCACATTGCCCAGACTGGTCTGAAAGTCTTGGGCTCAAGAGATCC  518
           ||||.||||||||||.|  |.||||                                                 
Sbjct 253  TTCAGAGTAAAGTGGTT--GGCGGT-------------------------------------------------  275

Query 519  TCCCGCTTCCGCCTTCCAAAGCGCTGGGATAACAGGCGTGAGCCGCTGCCCGG-GCCATCCCTCGAGTA-AGTT  590
                                     ||.||.||.|.|||.|..|||.|..|| ||||.||    .||| .|||
Sbjct 276  --------------------------GGTTATCATGGGTGTGGTGCTACAAGGTGCCAACC----TGTATGGTT  319

Query 591  TCATCAGGTAGACATTAATTCTTTCACGAGGATCACGGATCGAGCTCTTTACTGGAAACCTGCGCCCCGCCTTA  664
           .||||||||                                             |.||..|||||        |
Sbjct 320  ACATCAGGT---------------------------------------------GTAAGGTGCGC--------A  340

Query 665  GTTCTCCACCTCTTCGTGCGGCTCCAG---GCAACTGCCAA-CAG-ATGGCGCCCGCCCGCCTATTTC-TCTCC  732
           |                       |||   |||..|   || ||| ||||           |||.||| |.|  
Sbjct 341  G-----------------------CAGAAAGCATTT---AACCAGCATGG-----------CTACTTCATAT--  375

Query 733  TTGCGGCTTTGGGCCTGGAGGGGAGGTGGGGAGAGTCCCAATAGCAG-----AGGA------ACTGGTGAGCCC  795
                  |||||                            |.|||||     |.||      |||||.||    
Sbjct 376  -------TTTGG----------------------------AAAGCAGTTTTTAAGACAAAACACTGGAGA----  410

Query 796  GGGCCAAAATTTCATCTGGCATCCGGAATGCAT  828
                      |.|||.|.|.|||         
Sbjct 411  -----------TGATCAGACTTCC---------  423