Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10083
- Subject:
- NR_045789.1
- Aligned Length:
- 5303
- Identities:
- 1149
- Gaps:
- 4151
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCAGCTTCCCGAGTAGCTGGGACTGCAGGCGCCAGCAACCTCGCCCGGCTAATTTTTTGTATTTTTGGTAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACGGGGTTTCACCGTGTTAGCCAGGAGGGTCTCGATCTCCTGACCTCGTGATCTGCTCGCCTCGGCCTCCCAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAGGTCCCGAAACTTAAGCTTCATTTGTTTCACTGCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCTGCTTCTGCCTACAAGCCTGGTCTCATTTTCCTCTACCTAAGGATCTTCCTCCATGCAATTTCGGCCTAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCCTTCCCGCCCCTTTTCGCCTAGCTAACTCTTTCGGTACTCAACCACCAACTCCTAATCCTCCCTGGTCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAAGTGGGCTAGGGGCTTCTTGGGAGTCCCTCGCACTGCTCTAAGCATCCAGGCAGAGTCATTATTCCGGGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCAGGTTGCTCTTTTTCCAGCAGCCTTCAGGGGACTCCTGGCTGGGCGGAGTCTGTAGAGGCGCGCGGAGTCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGGAGAGCGTCAGATGTATTTCCTTTCCCTTTTTTCGCTCGTGTCCCGCCGGGTGGCGCTCACCACCTCCCCG 592
Query 1 ----------------------------------------------------------ATGGCAGCGCTGACAC 16
|||||.||||||||||
Sbjct 593 GAACACGCGAGTCTCCTGTCGCGGTTCCGGTCGGAATTACCCCGTGGAGCACGCCGATATGGCTGCGCTGACAC 666
Query 17 TGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGAGACATCGATATAAGAAGAAA 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGAGGGGTGTCCGGGAGCTGCTGAAGCGTGTGGACCTCGCGACGGTCCCGCGGAGACATCGATATAAGAAGAAA 740
Query 91 TG------------------------------------------------------------------------ 92
||
Sbjct 741 TGGCCCGGTCGCCCTCACCCCTCGGAAAATACCATAGCGACCTTGCCTGCACTCCTGGGTCTCCGCCGCCTTGC 814
Query 93 -------------------------------------------------------------------------- 92
Sbjct 815 AGGAAAGGATTCAGCCCCTTCCTCAACCTCGAGCTGCCTCTGGCGACCGGGCAAGGTTACAGCGACCACCCTGT 888
Query 93 -----------------------------GGCTGCCACAGAGCCCAAATTCCCTGCTGTTCGACTGGCTTTGCA 137
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCATACTGCCGGCCCAAACCCTGGCAAAAGGCTGCCACAGAGCCCAAATTCCCTGCTGTTCGACTGGCTTTGCA 962
Query 138 GAATTTTGACATGGCTTACAGTGTGCAGTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGC 211
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAATTTTGACATGACTTACAGTGTGCAGTTTGGAGATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGC 1036
Query 212 AGAAGTATGGTGCACTGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGAAGTATGGTGCACTGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCC 1110
Query 286 AAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCC 1184
Query 360 TGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCCCTCCTG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCCCTCCTG 1258
Query 434 CCAGACCTGGCAGCCTGGGTGTCATGGAGTACTACCTGATGGATGCTGCCTCCTTGCTGCCTGTTCTGGCCCTC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCAGACCTGGCAGCCTGGGTGTCATGGAGTACTACCTGATGGATGCTGCCTCCTTGCTGCCTGTTCTGGCCCTC 1332
Query 508 GGCCTGCAGCCTGGGGACATCGTGCTTGACCTATGTGCAGCTCCTGGGGGAAAGACACTAGCGTTGCTTCAGAC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GGCCTGCAGCCTGGGGACATCGTGCTTGACCTATGTGCAGCTCCTGGGGGAAAGACACTAGCGTTGCTTCAGAC 1406
Query 582 TGGCTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGCTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACA 1480
Query 656 GCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAA 1554
Query 730 CTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGA 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGA 1628
Query 804 GGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTG 1702
Query 878 CGGCTGGACTCCTTGCCACCAAACCAGGAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAAC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CGGCTGGACTCCTTGCCACCAAACCAGGAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAAC 1776
Query 952 GAGTATGTGGTGCAAGGTGCCATTGAGCTCCTGGCCAATCAATACAGCATCCAGGTACGGGTGGAAGATCTGAC 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1777 GAGTATGTGGTGCAAGGTGCCATTGAGCTCCTGGCCAATCAATACAGCATCCAGGTACAGGTGGAAGATCTGAC 1850
Query 1026 TCACTTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAA 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCACTTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATCCTGTCAGGTTGGGGAGCTGGTAATACCAA 1924
Query 1100 ACCTCATGGCCAATTTTGGCCCCATGTACTTCTGCAAAATGCGTAGGCTGACA--------------------- 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ACCTCATGGCCAATTTTGGCCCCATGTACTTCTGCAAAATGCGTAGGCTGACATAGTATCACCCAATCCCTGAA 1998
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1999 GCAAGAATACAAAGGGTATACTCTGTTGGATGCACCAGAAACTGGAAACTGGGACCAGTGGCAGAGATGCACTC 2072
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2073 TCGGTCCTGTCTCCATCCTGTTCGTGTCTTTCTGCAGTTTTCGGCAATAAGAAGTAGAAGATTTGCTGTCCTGC 2146
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2147 TGTCCAATTGTGGAGCATCAGCAGGTTTCCAACTCACTCATTAACCCCTACCCCATCTCCAGGCCTGTACTAAA 2220
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2221 GTTTGCTGCCCGCTTAGGGGCTTAGAAGGAGAAGCCAGTGAGCAGGCTCACACTAAGTTGTAAACATAGGAGAA 2294
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2295 GCATTTGGCCAATAAAGTTGTTGAAACTCTATAGACCTGGGGCTGCAGTTGGGGACTTCATGTCAGTGCAAATG 2368
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2369 CCATTAGTTCCATTTGTACCAGCCAGTTACTGAGCCCCTGTCACCCTTGAAGTGAGTTCCACCTGACCAGTCTT 2442
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2443 GAGCAGCCAACAGGCTCAATTAAGCCCGCCTGGTTTTTCCATATGGCTCATGATCTAATTTAAGGAACAAGTAA 2516
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2517 CTAAAAATGTTAAGCCAGTGCAAAATAATCTGCTTACCTACTCACATTGGAAAAACCCTCTGAGCTGAATAATT 2590
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2591 CTGGCCATTCCTGCTGTCAACAATACTGCTGCCCAAATGTGGCTTAGGAGGCTGCTTCTGCCACAAAACCGTCA 2664
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2665 TACTCTTGTGCGTGCCTTGTTCTTTGTTCATTCATCTAGCAGGTATTCCCAGACCTCGTGTATGACAGGTAGCT 2738
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2739 AGGGAGCTCTTGGAGATGTAGCAGTTGGGATTGTGGGAGATTACTGGGCTTCCTCATCCTTTAGAATGGTAACT 2812
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2813 CTCCTTTTGCTTTCTGAACACCTAGGAATTTCCTGATGTTTTGTTTTGTTGGATTCCAGACTTTTTGTTGTTTC 2886
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2887 TAGTCTGCAGCTGAGCTCTGGTGCCTGTTCTTTGGCCCACCCCCTAATCCCTAACTCTTCCCTCAGCATCACAG 2960
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2961 GGCTTCACTGCACACACTGTGTTCAGGGCAAGATTTCATCATTTACTGACTGCATACTCGATATGTTGTTTTTG 3034
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3035 TAACTTTAGCCAAAAGAAAGTAACCTTTAGTGGCAGGGATATAAAAAATTGCTCAGGGTCACTTGCAGATATTT 3108
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3109 TATTTTTAAACTTTTTTTTTTTTTCCTGGAAAACATCCTGTGCAGAAAAGGGTATATAATTTTAGAATACCTGA 3182
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3183 AGGCTTCTTGGCTTTTCCACTTTCCTTATTCCTCCTCTTCCTGCCACTCTTTTTGTCCCTTCTGTCTTTCCTGC 3256
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3257 TCATCCTTATTTGGGTATTAGAGGTGTCAGTTGAGGAGGGACTTTAGCTGAGGTTAAGCCTTCTTTTGGGATTT 3330
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3331 GCATTGTAATTGAGGGCCCTGGAAGATCTCTGAGACTCAAAATCAGGTGAAGCTAGGAAGATGGAGCTTTAAGG 3404
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3405 AGCATGGCTAGTGCTCTGAGTAGGACCGTAACCGCCTCCGTGCGTGGCATATGGTCCCTGCATGCTGTTCACTC 3478
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3479 TGTATAGTACTTAGTATTCGCTGAGGCTAAGAGGCCTCAGGTGCCTGGGCTTCTGCCCTTGGACTCCTGGATAT 3552
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3553 CCAGCCTAGTGCTAATTGAATGCTAAGCAGTGGTAATTCAAAATGAGAGGGTCCCCTGCCTCTAGAGTCATCAT 3626
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3627 CTAATTGGGGACAGGCAGACCTAGATAAGAAAAGCAGAGAACTACTTTGGAAAACAGTTTATCTGCTGTAATTG 3700
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3701 AACATTCAGCTACCCTATAACCCAGTTAATCCAATACTGGGGATAAATCCTAGAGAAACTCATACATGTACACC 3774
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3775 AGGAGATGTGTACAAGAATATTCATAGCAACCCTATTCACAAAAGCAAAAGCCTAGAAATAACCCAGATGCCCA 3848
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3849 TGAGCAAGAGAGTGGACAAGTAAACTGGAATATTCACATAATAGAACATTATACAATTGTCAAATGAACTATAA 3922
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3923 TGATACCTAACCATATGGATGAATCTGAGCAATAAAATAATTAAGTGAAAAAAGTTTAATCCCAGAAGAGTAAA 3996
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 3997 TGTAGCATGATGCCCTTTCTAAATGAAAGGTTTTTTCTTTTCTATGGAGTTATTCTTTACATACAATATAGTTC 4070
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4071 ATAAATTTTAAATATATTGTTTAATAAATTTTGATAATTGTATATAATAGTATAGTCACCATCAAGATGTAGAA 4144
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4145 AATAGAAAATAGGCTAGGCACAGTGGCTCACGCCTGTAATCTCAACACTTTGGGAGGCCAAGGTGGGAAGATCA 4218
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4219 CTTGATCCCAGGAATTCTAGATCAGCTTGGACAATGTAGTGAGACCTGGTCTTTACCAAAAAAAAAAAAAAAAA 4292
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4293 AATTAGCTGGGTGCGCTGGCATGTGCCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATCACTTGAGC 4366
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4367 ACAGGAGTTTGAGGCTGCAGTGAGCAGCCTGGGCAAGAGAGTGAGACTCCGTTTTGTGCCACTGCACTCCAGCC 4440
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4441 AGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGGCATTGGGATTTATAATGTGCTGTTT 4514
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4515 AAAGTCTGAAGCTCGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAAAACTTTGGAAGGCTGAGGCAGGTGGA 4588
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4589 TCACCTGAGGTCAGGAGGAGTTCAAGACCAGCCTGGCCAACGTGGTGAAACCCCATCTCTATAAAAGTACAAAA 4662
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4663 GGGCATGATGGCAGGTGCCTGTAATCTCAGCTACTCAGTAGGCTGGAGCGGGAGAACTGCTTGAACCTGGGAGG 4736
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4737 TGGAGGTTTCAGTGAGCCAAGATAGCGCCATTGCACTCCAGCGTGGGCGACAGCAAGAGACTTCATTTCGATAA 4810
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4811 ATAAGTAAATAAATAAATAAAGTCTGAAGCTCCACTGGTCACTCCTTTTATTGATTATTTGCAGCTGGTCTAAC 4884
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4885 CAGTTACGTATGTCTGGCTTGATTACATGGCCAGAGCAACATAAAAGCCCTGCTGGGAACTTCTGATTTGAGCT 4958
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 4959 CTTCCAAAACCAGGATGGATGCCTCACATAGATCATGATGATTCAATCCAAAGGCACTTTGCAGTGCAGTCCAC 5032
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 5033 ATGTGCATAAGGACCATGGGGAGCTTGTATTTGGGAATTCTGAGATTCCTGATGTTTACCTACCTAGTCTTTCT 5106
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 5107 CTTGCTGCCCTGTATCCTTTGCCTTTAAATAAAAATCTTAAGTGATTATGCTCTGTGAAGCCTGGATAATCCTT 5180
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 5181 TCAAATATTTGGTCTTGGAAAATTTTTGCATATATACATGGAATCATACAATATGTAGTCTTTGGTGTTTGACT 5254
Query 1153 ------------------------------------------------- 1152
Sbjct 5255 TCTTTGACTTAGTGTAATGTTTTTGAGATTCAAAAAAAAAAAAAAAAAA 5303
