Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10086
Subject:
NM_001367406.1
Aligned Length:
4023
Identities:
2122
Gaps:
1890

Alignment

Query    1  ATGATGAACCGGACGACCCCCGACCAGGAGCTGGCGCCAGCGTCGGAGCCCGTGTGGGAGCGGCCGTGGTCGGT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGAGGAGATCCGCAGGAGCAGCCAGAGCTGGTCGCTGGCGGCCGACGCGGGCCTACTACAGTTTCTACAGGAAT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCTCACAGCAAACTATCTCTAGGACCCATGAAATCAAGAAACAAGTGGACGGACTAATTCGGGAAACCAAAGCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACAGATTGTCGCCTGCATAATGTCTTCAATGACTTCCTTATGCTCTCTAATACCCAGTTCATTGAGAATCGTGT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCTGAGGCAGAAAAAACAGAGCAGGAGAAGACACGAGAGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGAAAGAAGTAGATCTCATTCCTAAAGTCCAGGAGGCTGTGAACTATGGCTTACAAGTATTGGACAGTGCCTTT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGCAACTTGATATCAAAGCAGGAAACTCAGACTCCGAGGAAGATGATGCTAATGGGCGGGTGGAACTGATCCT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TGAACCAAAGGATCTATACATTGATCGTCCTTTACCATATCTCATTGGGTCAAAGCTGTTCATGGAACAAGAAG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  ATGTAGGTCTTGGAGAGCTGTCCAGTGAAGAAGGCTCTGTAGGCAGTGATCGTGGCAGTATTGTGGACACTGAG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAAGAGAAAGAAGAGGAGGAGTCAGATGAAGATTTTGCCCATCATAGTGACAATGAACAAAACCGGCACACCAC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  ACAAATGAGTGATGAGGAAGAGGATGATGATGGCTGTGACCTTTTCGCTGACTCTGAGAAGGAGGAGGAAGATA  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TTGAGGACATTGAAGAAAATACTAGACCTAAAAGAAGCAGACCTACATCGTTTGCAGATGAGCTGGCTGCCCGC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ATCAAGGGGGATGCCGTGGGTCGAGTGGACGAGGAGCCGACAACCTTACCCTCAGGAGAAGCAAAACCTCGGAA  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GACACTCAAAGAGAAGAAGGAAAGGAGAACTCCTTCAGACGATGAAGAGGATAACTTATTCGCACCCCCCAAGC  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  TGACCGACGAGGACTTCTCGCCATTTGGCTCTGGAGGTGGCCTGTTCAGTGGGGGCAAGGGGCTCTTTGATGAT  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  GAGGACGAGGAGAGTGACCTCTTCACGGAAGCCCCCCAGGATCGGCAAGCTGGAGCCTCTGTTAAGGAGGAGTC  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  TTCATCATCCAAACCTGGAAAGAAAATCCCAGCAGGAGCTGTTTCTGTATTTTTAGGAGACACGGATGTGTTTG  1258
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1259  GTGCTGCCTCCGTTCCATCAATGAAGGAGCCACAGAAGCCTGAGCAGCCCACTCCAAGGAAAAGCCCCTATGGT  1332
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1333  CCCCCTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCTCGGCACCCCACAGCAA  1406
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1407  ACCTTCTAAAACAGGCAAAGTCCAATCCACTGCCGATATCTTTGGTGACGAAGAAGGAGATCTGTTCAAAGAAA  1480
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1481  AAGCCGTAGCATCGCCAGAAGCCACTGTGAGTCAGACAGATGAAAATAAAGCAAGAGCAGAAAAAAAGGTTACC  1554
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1555  TTATCTTCCAGCAAAAATCTCAAGCCCTCATCAGAAACAAAGACTCAAAAAGGCTTATTTTCAGATGAGGAGGA  1628
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1629  CTCTGAGGATTTGTTTTCTTCTCAAAGTGCGAGTAAGTTAAAAGGTGCGTCTCTGCTGCCTGGCAAGCTCCCCA  1702
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1703  CGTTGGTTTCCCTGTTTGATGATGAAGATGAAGAGGATAATCTTTTTGGGGGTACAGCTGCTAAGAAGCAGACA  1776
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ------------------ATGATGAAGATGAAGAGGATAATCTTTTTGGGGGTACAGCTGCTAAGAAGCAGACA  56

Query 1777  TTGTGTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGAGCTCTCCAAAAAGAAAGCATCTGCCCTGTT  1850
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   57  TTGTCTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGAGCTCTCCAAAAAGAAAGCATCTGCCCTGTT  130

Query 1851  GTTCAGCAGTGATGAGGAGGACCAGTGGAATATTCCTGCTTCACAGACCCACTTAGCATCTGACAGCAGGTCTA  1924
            |||||||||||||||||                                                         
Sbjct  131  GTTCAGCAGTGATGAGG---------------------------------------------------------  147

Query 1925  AAGGAGAACCCAGGGATTCTGGGACCCTCCAGAGCCAGGAGGCCAAGGCTGTGAAAAAGACCAGTCTCTTTGAG  1998
                                                                                      
Sbjct  148  --------------------------------------------------------------------------  147

Query 1999  GAAGACGAAGAAGATGATCTTTTTGCCATTGCCAAGGACAGCCAAAAGAAGACCCAGAGAGTGTCACTCCTCTT  2072
                                                   |||||||||||||||||||||||||||||||||||
Sbjct  148  ---------------------------------------AGCCAAAAGAAGACCCAGAGAGTGTCACTCCTCTT  182

Query 2073  TGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAACAAAGAAAA  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  TGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAACAAAGAAAA  256

Query 2147  AAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTTGGAGTGAAG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  257  AAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTTGGAGTGAAG  330

Query 2221  TCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGAGTCAGAAAA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  331  TCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGAGTCAGAAAA  404

Query 2295  GGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCATCCCCATGGG  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  GGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCATCCCCATGGG  478

Query 2369  ACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATGGAAGATCAA  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  479  ACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATGGAAGATCAA  552

Query 2443  AACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCCGCGATCCTGATGCCCACCCCAAGAGCACAGGTGT  2516
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  553  AACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCTGCGATCCTGATGCCCACCCCAAGAGCACAGGTGT  626

Query 2517  CTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACCTTTTTGCTG  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  627  CTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACCTTTTTGCTG  700

Query 2591  GCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGATGATCTTTTC  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  701  GCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGATGATCTTTTC  774

Query 2665  AGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGTTGACTCTTT  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  775  AGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGTTAACTCTTT  848

Query 2739  CAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAACACCTCAGG  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  849  CAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAACACCTCAGG  922

Query 2813  ACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCAAATTTAGCG  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  923  ACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCAAATTTAGCG  996

Query 2887  ATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCCAGAATTGGC  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  997  ATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCCAGAATTGGC  1070

Query 2961  TTTTCCTTCATCTGAACACAGAAGGAGCTACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTGGGGAGGCCG  3034
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071  TTTTCCTTCATCTGAACACAGAAGGAGCCACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTGGGGAGGCCG  1144

Query 3035  GTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAGATGAGAGGG  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145  GTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAGATGAGAGGG  1218

Query 3109  AAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGACTGAGGACATGAGCGT  3182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1219  AAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGGCTGAGGACATGAGCGT  1292

Query 3183  CCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGCTCAGAGCAG  3256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293  CCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGCTCAGAGCAG  1366

Query 3257  CCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCTGTGCCTGGA  3330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367  CCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCTGTGCCTGGA  1440

Query 3331  GTGGACAGAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTCTGGGGACAT  3404
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441  GTGGACACAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTCTGGGGACAT  1514

Query 3405  CTTTTCCACGGGCACTGGATCTCAGTCTGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGAATCCTGCCA  3478
            .||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515  TTTTTCCACGGGCACTGGATCTCAGTCCGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGAATCCTGCCA  1588

Query 3479  ACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGTGAGGCCAGCAGTGATGATGATCTC  3552
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1589  ACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGCGAGGCCAGCAGTGATGATGATCTC  1662

Query 3553  TTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGATGACCTCTT  3626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663  TTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGATGACCTCTT  1736

Query 3627  TACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAATAGTCAGCAGGATGTCATATTAACAACACAAGATA  3700
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1737  TACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAGTAGTCAGCAGGATGTCATATTAACAACACAAGATA  1810

Query 3701  TTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAAACATTG  3774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811  TTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAAACATTG  1884

Query 3775  GAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAAGTCCAAAAA  3848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885  GAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAAGTCCAAAAA  1958

Query 3849  GAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCTCTGGTATCCAGGCTAAGACAA  3922
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1959  GAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCACTGGTATCCAGGCTAAGACAA  2032

Query 3923  CCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAACATCTTTGAT  3996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033  CCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAACATCTTTGAT  2106

Query 3997  GATCCCCTGAATGCCTTTGGAGGCCAG  4023
            |||||||||||||||||||||||||||
Sbjct 2107  GATCCCCTGAATGCCTTTGGAGGCCAG  2133

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