Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10171
- Subject:
- XR_001744749.2
- Aligned Length:
- 4304
- Identities:
- 278
- Gaps:
- 4026
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG 370
Query 1 ----------------------ATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCC 52
||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGC---------- 434
Query 53 TTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACC 126
Sbjct 435 -------------------------------------------------------------------------- 434
Query 127 GACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC 200
||||||||||||||||||||||||||||||||||
Sbjct 435 ----------------------------------------AGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC 468
Query 201 TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA 542
Query 275 TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAG 616
Query 349 AACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTG-------------------- 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCT 690
Query 403 -------------------------------------------------------------------------- 402
Sbjct 691 GGCCTCTGCTGTGGGTGAATTTCTGTACTGGAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAA 764
Query 403 -------------------------------------------------------------------------- 402
Sbjct 765 GAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAG 838
Query 403 -------------------------------------------------------------------------- 402
Sbjct 839 CAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACAT 912
Query 403 -------------------------------------------------------------------------- 402
Sbjct 913 CATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCG 986
Query 403 -------------------------------------------------------------------------- 402
Sbjct 987 CTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGAT 1060
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1061 TCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTAT 1134
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1135 TTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATC 1208
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1209 CACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAA 1282
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1283 ACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCT 1356
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1357 CCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCT 1430
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1431 GTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGC 1504
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1505 ACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCT 1578
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1579 ACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATT 1652
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1653 GCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAA 1726
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1727 AAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAAC 1800
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1801 TCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATA 1874
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1875 GAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCT 1948
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1949 TTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCAC 2022
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2023 AGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTT 2096
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2097 GAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCT 2170
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2171 CCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTC 2244
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2245 TCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCC 2318
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2319 TTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACC 2392
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2393 AGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGTCTGTCCAGCCT 2466
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2467 GGCCTGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTTATTTATTTATTTAT 2540
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2541 TTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCTCACTGCAGCCT 2614
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2615 CAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAACACACCACTGTG 2688
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2689 CCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGGTCTCAAACTCC 2762
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2763 TGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTCCCAGACACCTGCCA 2836
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2837 CTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATGGATCCTGCG 2910
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2911 GACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTCTCGGATGAC 2984
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2985 GTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGGACTGATGGA 3058
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3059 GAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACGTCTGGGCCC 3132
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3133 TCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCCTAGCTGCCC 3206
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3207 TCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGGGTTCCGAAG 3280
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3281 GCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCACTCATCGTTT 3354
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3355 CGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAGGCTCGCTCTGA 3428
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3429 GCCCAGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCCTCCTGC 3502
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3503 CTCGGCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTTTTTAGTTTTTAATT 3576
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3577 TGCTGGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCT 3650
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3651 TGACCTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGT 3724
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3725 TTCCAACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTG 3798
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3799 TAACAGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAG 3872
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3873 GTCAGGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGT 3946
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3947 GTGGTGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGA 4020
Query 403 -------------------------------------------------------------------------- 402
Sbjct 4021 GGTGGCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAA 4094
Query 403 -------------------------------------------------------------------------- 402
Sbjct 4095 ACAAACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAA 4168
Query 403 ------------ 402
Sbjct 4169 CTCACAATTTAA 4180
