Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
NR_104312.2
Aligned Length:
3241
Identities:
65
Gaps:
3169

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATTCCCGGGCCCTGGCTTCTTGGCGCGATGAGGTTCCGGTTCTGTGGTGATCTGGACTGTCCCGACTGGGTCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCAGAAATCAGCACGCTGGCCAAGATGTCCTCTGTGAAGTTGCGGCTGCTCTGCAGCCAGGTACTAAAGGAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGCTGGGACAGGGGATTGATTATGAGAAGATCCTGAAGCTCACGGCTGACGCCAAGTTTGAGTCAGGCGATGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGGCCACAGTGGCAGTGCTGAGTTTCATCCTCTCCAGTGCGGCCAAGCACAGTGTCGATGGCGAATCCTTGTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGTGAACTGCAGCAGCTGGGGCTGCCCAAAGAGCACGCGGCCAGCCTGTGCCGCTGTTATGAGGAGAAGCAAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCCCTTGCAGAAGCACTTGCGGGTCTGCAGCCTACGCATGAATAGGTTGGCAGGTGTGGGCTGGCGGGTGGAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TACACCCTGAGCTCCAGCCTGCTGCAATCCGTGGAAGAGCCCATGGTGCACCTGCGGCTGGAGGTGGCAGCTGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAGGGACCCCAGCCCAGCCTGTTGCCATGTCCCTCTCAGCAGACAAGTTCCAGGTCCTCCTGGCAGAACTGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGCAGGCCCAGACCCTGATGAGCTCCCTGGGCTGAGGAGAAGGGTGTTCCAGGCCTGTGTGGAGCCGCCCTGCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGTATGGAGTCACGCCCTCTGAACTGCTCTTCGGGAGGCAGCCCTGGTTCTAGGATGCTGAGGCCCTGGCCCGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACTCTGGCCTCCCAGATCCCCAGCTGCCTCACTTCTCTCTTGAGAACTTGGCTCAGGGCTCCTGAGGACCTTTC  814

Query    1  ---------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCT  41
                                             |||.|||||||||||||.||||||||||||||.||||||||
Sbjct  815  CCAGCATTACCTTCCCTTCCCTTGAAAGTAGAGATGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCT  888

Query   42  GACCTCAGGTGATCCGCCCACCTCAGCCTCC-------------------------------------------  72
            |||||||||||||||.|||||||...|||||                                           
Sbjct  889  GACCTCAGGTGATCCACCCACCTTGCCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACTGCGCCCAGCCAC  962

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  963  TGCCATCATCTTTAGGAAGAGAGAAGTGACCATGCCTGAACCAGTCATTGGCAAGAGGAACGGTGTTATGGACT  1036

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1037  GAATGTTCATGTTCCTCCAGAATTCATATGCTGAAGCCTCTGTCCACACATGCACACCAGATGAGGGCCATGTG  1110

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1111  CGCACACGAGGTGGCTGTCTACAAGGCCAGAAAGAGGGCTGTCAACAGGAACTGCGTCTGCTGGCACCTTGATC  1184

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1185  TTGAACTTCCCAGCCTCCAGAACTGTGAGAAAGAAATCTCTATGGTGTAAGCCACTAGTCTGTGGCATTGTTAT  1258

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1259  AGCAGCTCGAGAAGACTAAGGCAGATGGGCTTCCAGGACTGGCCCAGACCAGCCAGGGCTCCTTGTAGAAAAGG  1332

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1333  CTGATGCCAGGGTTGGCACATGGAGGGTACAAGGAGGACTCGCCTGGAGTATCTTAAGGAACCTATCGAAGAAT  1406

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1407  AATGGCTTGTTCCACTGGCCAAAGATGGGACAATTTGAACATCAAAAGAGATACTTACTGACTCCACTCCTGAC  1480

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1481  TTCTGCTTCTGAAAAAATGAAGTAGGTGTTTTCCCTATTCCTCCCACTAAGTACAGTTAACAACCCTGGATGTT  1554

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1555  ACATATAAAACAAACAAAAAGACTCCGAGCGATGGAGAGAAGGCACCCTAGCCTGGCTGGGATCCTCAGGACCT  1628

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1629  GAGGCTCCACAGAGAGAAATTCCTGGAATCTGGACCCCATGGCCCAGTCAGGTTACACAAAACTGATCATCACA  1702

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1703  GATCTGTAGAACTATACAAAAGTGCTAACATTCATGATTAGGGTCTCAGAAGGTAAGGAGGAAGAGAGTGGAAT  1776

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1777  GGAAAAAGTATTCAAAAAAATAATCACTAAAGGCCAGGTGCAGTGGCCCATGCCTGTAATCCCAGCACTTTGGG  1850

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1851  AGGTGGGACAATTGCTTTAGACCTTGCAACTGGCCTGAGCAACACAGGGAGACTCAGTTTCTCCAAAAAAATAA  1924

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1925  AAAATTAGCCGATCATGGTGGTGCGTGCTTATAGTCTCAGCTACTCAGAAGGCTGAGGCAGGAGGATCAATCGC  1998

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1999  TTGAGCCCAGGGGTTTGAGGCTGCAGTGAGCTGTGATCATACCTCTGCACTCCAGCCTGGATAACAGAGCTGAG  2072

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2073  ACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTATATATACACACATTGGAATATTTTTCAGCCCT  2146

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2147  TAAAAAGCAGAAGGTTCTGTCATTTGTGACTTGGATGAACCTAGACGACATGATGCTAAGTGAAATAAGCCAGG  2220

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2221  CACAGAGAGACAAATACCTCGTCACCTCACTTATGCCTGGAGTTGAAAAAAGGGCCTGGGGCAGTGGCTCACGC  2294

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2295  CTGTAATCCCAGCACTTTGGGAAGCCAAGGTGGGAGGATCACTTAAGCCCAGGAGTTCGAGACCAGGCTGGGCA  2368

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2369  ACATGGCAAACCTGTCTCTACAAAAAGTAAAAAAATTAGCCGGGTGCAGTGGCACATGCCTGTGGTTCCAGCAC  2442

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2443  TTGGGAGGTTGAGGTGGGAGGATTGCTTGAGCCAGGGCGGTCAAGGCTGCAGTGAACCATGATAGTGCCCCTGC  2516

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2517  ACTCCAGCCTGGGTGACAGTGAGACCCTGTCTCAAAAAAAAAAAGTTAAATTCATAGAAGTCGACAGTAGAATG  2590

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2591  GTGGTTAGCAGAGGCTGGAGGAGAGAGAGGGTGGGTTGTGGGGAAAAGGGGAGACACCGGTCAAAAGGTACAAA  2664

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2665  GTTCCAGTTAGGAGGAGTACATTCTGGTGATTTATTGCCCAGCGTGGTGACCAGTTAATAATGATGTATACTTC  2738

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2739  AAAATAGCTAAAAGAGGGTTTTAAATGTTCTCATCACAAAGAAATAAATATTTGAGGTAATGGATATCCTAATT  2812

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2813  AGCCTGATTTGATCTTTTTTTGTGTTTTTTGTTTTCTTGAGACAGAGTCTCACTCTGTTGCCTAGGCTGGAGTG  2886

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2887  CAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCCTCAGCCTCTGTAG  2960

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2961  TAGCTGGGACTACAGGCATGCACCACCACCCCTGGCTAATTTTTTGTATTTTTTGTAGAGACTGGGTTTCACTA  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  TGTTGGCCAGGCTGGTTTTAAACTTCTGACCTCAGGTGATCCGTCTGCCTCGGCCTCCCACAGTGCTGGGATTA  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  CAGGCATGAGCCACCGTGCCCAGCCGATTTGATCATTCCACAATATATGCATGTAACAAAACATCACACTGTAC  3182

Query   73  -----------------------------------------------------------  72
                                                                       
Sbjct 3183  TCCATAAATTTATACAATTATTATTTGTCAATTAAAAATAAAACTATAGATAAGTCAAA  3241

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.