Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001751183.1
- Aligned Length:
- 6571
- Identities:
- 64
- Gaps:
- 6502
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAAACAGGAAGTGCCTACGGAGGCCGGGCCGGCAGCGGCGGCCGGGCATGAAGCCGGGCGGCTACGGGATCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGGCGGCGGCGGCATCGCGGGCGGCGGCGGCGATGAGCGACATAGTGGAGAAGACGCTGACGGCGCTGCCGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACTCTTTCTGCAGAACCAGCCCGGTGGTGGGCCCGCGGCCGCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACGAAGAAGAAAAATTAATCCAGCAGGAACTGAGTAGTCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAAGCGACTGTTTCTGCTCCTACTACAACACTGAAAATGATGAAGGAATGTATGGTGAGACTTATATATTGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AATGCTTGGATATGATGCTTCCTTTGGCTATATTCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAGAGTAGGTTATTTGGCTGTTTCCTTATTTCTACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTTGTAAAGGATCTGCAGAGCACTAACCTAGTAGAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCGAAATGATTCCAGCTGTTCTTCCATTAATAGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGCTGTTCTGGCATTATACAAATTCCATCTCATTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGCACTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCATCTGGATATAAAGACTTGACTGGGAGTTTTGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAGAATTCAATTACCACAGTGTGCCAGCACCATGGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGATGATCAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAATGTCACATATGCTATTTTGTTTGAATGTGTGCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTACCTATGTTATCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGTCCAGAAAATGCTTGAATATTTACATCAGAGCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCAGAGCTGGCTGAGAAATATGCTCCTGATAATGCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGGAGATGTAATGCATCCTGATATTCCCAATAACTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAACAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGATCAGCAATTAAGACTCTATGCAGTTCAGTCTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATCCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGAGATTTCTTCAAGTTATGAGTTGGGTATTAGGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTTATAGCTAAGCTCTACAAGTTACTTATGAATGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGCTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTGTGACCAAATTGACATCTCAGGCGCACTCTTCTAATACAGTTGAGAGATTAATCCATGAATTTACCATATCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTGGATACTTGTATGAGACAACATGCATTTGAATTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCTTCCAGTTGACAGGAGTTGTGAAGACTTGGTGGTAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGCTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAGGACTCAGTCAGGGTGCAGCGCCTTACAAACCTCCCCATCAACGCCAGGAGGAAAAGCTTTCTCAGGAAAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTCTCAATTTTGAACCATATGGACTCTCCTTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGCAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTCTCTTGGTTCAGATGTATCTGGGAATAGTGCTGAGACAGGACTGAAAGAGACAAATAGCTTGAAGCTGGAAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTATAAAGAAATTGTGGGGGAAAGAAGGCTATCTTCCCAAGAAGGAAAGCAAAACTGGTGATGAAAGTGGAGCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTGCCTGTTCCTCAAGAGAGTATAATGGAGAATGTAGATCAAGCTATAACTAAAAAGGATCAATCTCAAGTTCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TACCCAATCTAAAGAGGAGAAAGAAAAGCAGCTGCTGGCATCATCATTATTTGTTGGTCTAGGATCAGAAAGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CAATCAACCTGCTGGGAAAAGCAGATACTGTCTCTCACAAGTTCAGAAGGAAATCAAAAGTCAAAGAAGCTAAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGTGGCGAAACAACCAGTACTCATAATATGACCTGTTCTTCCTTTAGTTCTTTGTCAAATGTGGCATATGAAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGATTATTATTCGAATACTTTGCACGATACAGGAGACAAGGAATTAAAGAAATTTTCTCTCACTTCAGAACTTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGGATTCTGAGTCACTCACAGAACTGCCCTTGGTTGAGAAATTCTCATATTGTAGTCTGTCTACACCTTCATTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTGCTAATAACAACATGGAAATTTTTCACCCTCCTCAATCTACTGCAGCCTCAGTTGCCAAGGAAAGCTCTTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCTTCATCTTTTTTGGAAGAAACTACTGAATACATACACTCAAATGCTATGGAAGTCTGTAATAATGAAACTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TATCAGTGTCTTCTTATAAAATTTGGAAAGATGATTGTTTATTGATGGTCTGGTCAGTCACTAATAAGAGTGGT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTGGAATTGAAAAGTGCTGACTTAGAAATTTTTCCTGCAGAAAATTTCAAGACCATTAAAAATCTCAAGTGACG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ACTTTGGGAAACTCTGGTTATCCTTCGCAAATGATGTGAAACAAAATGTAAAAATGTCAGAATCTCAAGCTGCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTCCTTCTGCACTAAAGACTCTGCAACAGAAACTAAGACTCCATATTATTGAGATTATAGGCAATGAAGGGCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATTGGCCTGTCAGCTGCTCCCATCCATCCCCTGCTTACTGCATTGCCGAGTTCATGCAGATGTATTAGCCCTGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GGTTCAGATCCTCCTGTTCTACTCTTCCTGACTATTTACTGTATCAGTGTCAAAAGGTGATGGAGGGATCCTAG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CAGAAGCCCTGCTAAATTTTACTCCATCAAGATCAATGGTTTACATAGATAAACTTATTTACCAAAGTAAAAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACTCATGGTACTTCTAATGAAAATGGGGATTATTACAAGTGTGGTTTATATGTTTTCTTTGTGATTCCTGGTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAGAAAGATCCCCAAAACTGTATCCCTAACCTTTAACTCAGGATTGTACAGTATGTTTAGGTCCCTCAAAAAGT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCTAAGCTAATGTTATAAACTGCTAATGATTTATATATCACTTAGTGTGTAGAGGGACTGAAAATATTTATT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTGTTATAAATAATTTTATAGCACGTTTACTCTAGTGCTAGCTAATTTGTAATAAAGCCAAGTCTCAGTTTTCT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GCATTAAATGGAAGGGAGACATGAAATTGATAATCTCAAACTTAATTCATATTTGGCTTTGGAATGTAGTGTAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGTTTTTGGTAGGGAAGTCAATATTTTCGATTATGTTTTGCTTAGATCAGTGTTGAACTAAGTTGGCATAGCAC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ACACTAACAGTTGTAGGAGATCCATGAGCATGCTGGATATTGAGGGGATCCAATCTGTGATCTATTTTTTATTA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TAGATAACTGTTACACATAATTTCAGATCGTTTGGCTGTAAAATTTGTCTGTTTTCCACTTGGAGTTATTTTAA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AATTCAAAGTAAATCACTCTATTCTTATTTTGAAAACTCAGAGCCATTTTATATAGAAACAAAACCCATAAGAG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CACACAGTAACAAAGCAAACAGATACAAAAATGACTTTTTAGTTATGACAAATATTTTAGTTGGTTACTACTTA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGTCCTTTTGGCAAATGAAAATTTGTGATTAGAGTATAAATGGCAAAACTATCTTTTCCTGGCCTTTGAATCCA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CTAGTACTTAATGGATATAGCTGAAGCAGAGACTAAGTATAACATACAGGTTCTTCAGTAAAATATATCATTTT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CATGTTATAGTTATGCCTGTGTGGCCTCTGTCAGAACTATTATCAGTAAAAGAGGTTAAGCCTATATATGAATG 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 ATGGACCAAAACCTTGAGGTTGTACATTAACTGAAATAGTATTTTATAAAATCTTATGGTGCTGTGGAAAATAT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TTATTATTTCACCTTTTCTGACACTTCACCATGGAGACTATTCAGGTAATACAATTTTAAGTCATTGCAGTTAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TACTCTGGTTAATTGGTACTGTTAATCACCCAGGTCAGGAATTCTGATTTTAGGTTATCTCATTAATCATGGCT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GATAAAGAAGCTAAGGGGATTCTCCAGATCTAATAGATTTCATTAGTCATTTGTGTCGAGTATTCCTCCCTAAA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AACAAAAGCAGTATTTTCTTTCTCAATTAATTTTTAAGTTATTCATTAAAAAATATATAACATCTTAATTTTAT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TCTTTTAAAAACATACAGTGAAGCCTTGCTACAAGAGTCATAAGTGACTGGAATTTCTTGCATAATAGGTTCCT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 CCTTTTGAATAGATCAGATTCATCCCCAGGCTCTCAGCAGTGTCATGATGAAATGAGTGTGCTGACTTCAGGGG 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGTGGTGGACACTGGTAGCTAGCCTTATCAGCTCCCTCCTTATTCCTACCTCTGTCAGCAGCATGCCTCGCCCC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TTACCTAATTCTGCTGTGACTCTGACAGAGAGGAAGTGCCTTCTCACTTTGCAAAGGAATGCAGCATGTCACAA 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 AGGAGGTGCTCCAATTTTTTGTGTCCTTACTTCCCTATGTTTGCCTAGTTACTGAGGCTAGGTCGAGTGTGAAG 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 CAATAGGTGTAAGATGCTGAGAGCACATGGACAGCTACCAGGGAGATCTGTTGCTTGGTTACAGGGTGTATTCA 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 TGAGTGGTAGCTGCAGTTGTCGTGAGAGACATGCTTGGCATACAGAGCTGTCTAATGGGTGGGAGACATGTAAT 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 GGTAGATTTAGGGCTGGGAGCATGATTTTGGGTCTGCCCAAAGGAACATGGTGTCACTTTTGTTCTTTCTGACC 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 CACTAAATAAAAAGTAGTGTAACAGGGTTTCACTGGAATGTTTATTAGAAAGTTTACACTTTTTATATTTTTAT 5402
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5403 GATTTTAAAAACAAACAATAATAGAAAAACAGATTTTAAGGAACTTCAGAGCAGTATATATTCTGTCTAAACTC 5476
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5477 ACTGAATATTTTAAGTTGTAAATCAGGTGTCCACCAACCTTTATTTTTGCATTGCAGGAGATGTGACTGTAAAG 5550
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5551 TAGGGAGTTTTTTTTTTTGAGACAGAGTTTCACCCTTGTTGCCCAGGCTAGAGTGTAATGGTGCAATCTCCGCT 5624
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5625 CACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCAT 5698
Query 1 ---------------------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGG 29
| |||||||||||||.|||||||||||
Sbjct 5699 GCACCACCACACCCGGCTAATTTTTTTATATTTTTAGTAGAGACAA---GGTTTCTCCATGTTGGTCAGGCTGG 5769
Query 30 TCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC------------------------------- 72
|||.|||||||.||||||||||||||.||||.|||||||||||
Sbjct 5770 TCTCGAACTCCCGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACT 5843
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5844 GCGCCCGGCCAAATTATTTTTGTGGGTAGATTCATTCTCTTTACCTAATAGTCATAATTTAGTCAGTGAAGGGA 5917
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5918 CAACATCTGGGGTAAGAGCTATGGAGGAGGTGCTCAGCTTTGTGAGTTTTGTGCCAGGCATCTTTGCTGAAAAT 5991
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5992 GGAGATGGCAGCAAGTGTGAATCTGGGGGAATATAAGGGAAGACAGAAAAGCCTTAAGAGTAGACGGAGGAAGA 6065
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6066 AGGGTACCAGAATAGTCCCTGTGGAGGCAGGCAGATCAGAGCTCAGGGTTTGAAAGTGGGCCTGAGTAAGGGTC 6139
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6140 CTGCTAGAGAAACTGCAGATGGAAGCTGAGCAGTTACCAACTGCTAATGTGCCAAGTATACCAAGCACAGCATG 6213
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6214 TGTCCTGTAGAGGAGCATTATTTTAAACAATGTTCTACTATCATCTACCAAAATAATTGTGGTAAAAGTGTAGT 6287
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6288 ATTTTATTTTTTCCTTTTATGTCAGCAATATTTTAAAATATTGATCTGTTTATCTTATATTTTTATGGATAAAT 6361
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6362 GTAGTATTTGCCTCATGATTGTGAGCCACTGAGAGTGCACTGAACCTATTCACATGTCTTTAAGATGTTTTGCT 6435
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6436 GTGTTAAAATTTTAGGAGAGAAAAATACAAGTGAATAATTATTTAATAGGCATTTATTACTTTATTTTGGAGTT 6509
Query 73 ----------------------------------------------------------- 72
Sbjct 6510 GAATTCTGTCATTTGAAAAAGTTCAGTAATGTAATAAATACAAAGTGATCTGCACTGTT 6568
