Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10302
- Subject:
- NR_135006.1
- Aligned Length:
- 3640
- Identities:
- 257
- Gaps:
- 3355
Alignment
Query 1 ---------ATG-TCAAGTTCAGGTTACCCTCCCAACC--AAGGA-GCATTCAGCACAGAACAAAGTCATT--- 58
|.| |||| || |||.|.|..||||| .|||| ||..|.|| ||||..|
Sbjct 1 ACATACTGGAGGATCAA---CA--TTATCATGGCAACCCTGAGGAGGCTGTGAG----------AGTCTCTGGG 59
Query 59 ATCCT------CCT-CACTCTGTAAAGTATACGTT-----------TCCCAGCACCCAC-----CAC-----CA 104
.|||| ||| || |.|||..|..|.|| |.|.||.|..||| ||| ||
Sbjct 60 GTCCTTGCCGGCCTGCA----GAAAATCAAGCTTTGAGCGGGAAGCTTCGAGGAGACACAGTGTCACAATTACA 129
Query 105 GCAGGATCCAGCATTTGGAGGCAAACATGAAGCTCCATCCTCTCCAATTCTGGGGCAACCGTGTGGAGATGATC 178
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 --AGGTTCCAGCATTTGGAGGCAAACATGAAGCTCCATCCTCTCCAATTCTGGGGCAACCGTGTGGAGATGATC 201
Query 179 AAAATGCTTCACCTTCAAAACTTTCAAAGGAAGAGTTAATAGAGTGTATGGATCGTGTAGATCGAGAAATTGCA 252
|||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||
Sbjct 202 AAAATGCTTCACCTTCAAAACTTTCAAAGGAAGAGTTAATACAGAGTATGGATCGTGTAGATCGAGAAATTGCA 275
Query 253 AAAGTAGAACAGCAGATCCTTAAACTGAAAAAGAAACAAGTAAAAGTCTTCGTC-------------------- 306
||||||||||||||||||||||||||||||||||||||||||||||||||.|.|
Sbjct 276 AAAGTAGAACAGCAGATCCTTAAACTGAAAAAGAAACAAGTAAAAGTCTTTGCCTAATATATTCTAAGAATGTA 349
Query 307 -------------------------------------------------------------------------- 306
Sbjct 350 TTTTTTTCTCCCTACCGAAGATATTTTTGAGTTTTCCATATTTTGAAACATTACATAAAAGGAATCATTCCTTA 423
Query 307 -------------------------------------------------------------------------- 306
Sbjct 424 TATATTCTGACTTGCTGTTTTTGCTACCATTGTGGTTTTCTTACATTCATTCATTTTCCTTGCTGCACTGTCCG 497
Query 307 -------------------------------------------------------------------------- 306
Sbjct 498 ATTATATGATTGTAGAGAGTGAAATTTGTTTGTCCATTCTATTTTTTATTTTTTTTTATAATCCATACAATGGT 571
Query 307 -------------------------------------------------------------------------- 306
Sbjct 572 GCTGGTTTTTGGTTCACATGCAGAGATTTTCCATGGCATGTGCCCAGGAATGGCAGTGCTTGGCCCAAGATTAT 645
Query 307 -------------------------------------------------------------------------- 306
Sbjct 646 GCACAGTGAACTATTTAATAGATGATACCAAATTTGCTAAGAAGTAACACCTTTTTACATTCCCACTGGCAGCT 719
Query 307 -------------------------------------------------------------------------- 306
Sbjct 720 TATGTGGGTACTGGTTTGTGCACATTCTTGCCTTTACTTGATATCATTTTTTTCAGTTGAATATGAAATAGTCT 793
Query 307 -------------------------------------------------------------------------- 306
Sbjct 794 TCTGTGGTTTGGAAGAAGGCTGAGCTTATTTTCATTTGTTTGTGGGTTATTTGCGTTCCTTATGTGCATTGTTC 867
Query 307 -------------------------------------------------------------------------- 306
Sbjct 868 AAGTCTTTTGTCTATAGTCTCCTATTTCAACATTGAAACTTTTAAGATTTCCTGAAGTCCCTTGTCAGATATGT 941
Query 307 -------------------------------------------------------------------------- 306
Sbjct 942 GTATAGAAGATTTGCCTAGTTTGAGGCCTGTCACTTCACTTTTAGCCTAGTATCCACTCTTAAGTGTACACTAA 1015
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1016 GTGCATTTTTTTTTCTGGAATTGGAGTCTCACTGTGTCACCCAGGCTGGAGTGCAGTGGTGTGACCTTGGCTCA 1089
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1090 CTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCAACAGCCTCCCGAGTAGCTGGGACTGCAGGCGCTT 1163
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1164 TAAGTGCTTTTAATGTATTCATACAGTTGTACAGCTATCACCACTCTCTAACTCTAGAACATGTTTATCATTTC 1237
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1238 AAAAAGAAACTCCATACTTACTAGCAGTTACTCCCCATTTCCCCCTTTCCCCAGCCCCTGGCAACCACTAATCT 1311
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1312 ATTCTCTGTCTCTATGGACTAGCATATGCCAAATATCAGAAAAAGCAGAATCATATGTGACCTTTTGTGTTTGG 1385
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1386 CTTCATTTATTTAGCATGTTGTCCTGATTCATCCATGTTGTATCTTGTGTCAGCACTTCATTGCTTTATATGCC 1459
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1460 TGAATCCCATTGCATGAGTATACTATGTTTTGTTTATCCATTCATTAGTTGATGGATATTTGAGTTATGTTCAT 1533
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1534 TTTTTGACTATGATTATTAACGTACTGTGATGAGATTCATGTAATCGTTTTTGTGCGGACGTATTTTTACAATT 1607
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1608 TTCTTTATATATCTAGGAGTGGGCCTATGGTAAATCTATGTTTAAATTTTTGAAAAACTTCAAAACTGTTTTCC 1681
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1682 AAAGTCTCTGTACCATTTTATATTATTACCAGCAGTGTATGGAGGTTCCATTTTTTCCTACCTCCTTGCCAACA 1755
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1756 TCTGTTATTTTTGTTTTTTAAAAAAATATACCCATCCTTGTAGATGTGAAGTTGTATCTAGTTGTAGTTTTCAC 1829
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1830 TTGCATATCCTTAATGACTAATGATGTTGAGCATCCTTTCGTGTGCTGATTGGCCATTTGTATATCTTTTTAGA 1903
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1904 GAAATGTTCATTTAGACTGTTTGCTCATTTAATTGGGTTGTCTTTTTGTTATTCTAAGAATTCTTTATATATTC 1977
Query 307 -------------------------------------------------------------------------- 306
Sbjct 1978 TGGACATTAGTTCCTCATCAGATGTATGACTTAATAGATATTTTCTCTCATTCTGTGGGTTCTTTTCACTTTCC 2051
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2052 TGATGGTATCCTTTGATGTACAAAAGTTTTGAATTTTGTTAAAGTCCAGTTTGTTTTTTCCTTTTGTCACTCTT 2125
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2126 GCATTTGGTGTTGTATCTAAGACCCATTGACTAATTCACGGTCACAGATTTATACCTATGTTTTCTTCTACAAA 2199
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2200 TTTTATAGTTTTACCCCTTATATTTGGGTCTTTGATCCTGATAGTGTTTTTTTGGTGAACAGAATTTGTTTAGG 2273
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2274 TTTTATATGAAAACCCACTGGGGCTATTAAGGTAGTCTTACTGTATTATCTTTAGAAGTTTTATGGTTTTGCTT 2347
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2348 CTCATCTTATTCTTAATCCACTGGAAACTACATGTTATATAGTCAGTGTTCATTTATATTTACTCACATATTTG 2421
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2422 TCTTCTTACGTACTCACCATTTCTTCTCGCAACTCAAGTCTTCCATCTAGGGGAACACCCTTCTACTGAAGAAC 2495
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2496 ATCTCTTAGAATTTCCTTTAGTGAAGGTCTTTTAGTTAGCAAATTCAGTATTTGTTTGGTTTTTATGACTTAAA 2569
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2570 TATTGTCTTATATTTGGCCTGTTTATTAAAACATATATTAATTTCGTATGTGATTATTTTTTCTTAGTACATTG 2643
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2644 TCTTCTTGCTTCCATTTTTAAGACATTAGCTCTTGGTCTAAATCCATATTCTTTCATGGATAATGTGAATTTTC 2717
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2718 TCTCTGCTTGTTTTCAATATATTCTTTTCTTCAGGGTTCCGTTATTTTTATGATGATACATTTAGGTGATTTTT 2791
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2792 TTTCCCTTTTAAATTGAGCTTCCTGAATATGAAGGGTGGAGTTTTTCATCACTTTGGGAAAATTCCAAGCCGTT 2865
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2866 ATCTTTTTTACAAAACCTTTCTAACAGTTTATTGTTCTACTTATGAAATCCTGTTAGTTGTAATATCTTATCAC 2939
Query 307 -------------------------------------------------------------------------- 306
Sbjct 2940 TCTTGTCTTCCATTTCTCTTGTTTCTTTCTTATTTTTTACTTCTTTGGGTTTCATTCTGAGCAATTTCTTCAGC 3013
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3014 CTGTCTTCCAGTTTACATTTTCCTTTTCAATTATATGTAATCTGCTGTCAAATCTGTCTTCAATTTCAACAATT 3087
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3088 ATGTTTTTATTTCTGGAATTTCTGTTTGGCTCTTTCTCAAATCTGCCTGGTCATTTTTTAAAATTTTTTTTGCT 3161
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3162 TTCATTGAGTTGTATTAAATTTTTAATATATGCCCAAAAATTCTAATTAAGTCTTTATTGGTTTGATTTTGCTG 3235
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3236 AGTCTGTTTTCTTTTTTTTTTTGTCTTTATTTTCTTTACTTGTACAATGGTAATAATCTAGTAATAACACCAAC 3309
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3310 TAAATCACATGATTGTTTTATGAATTGAGATAATGAATATATTCATTATCTCATAATATGTGGTACATAGTAAA 3383
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3384 TGTACATGCGATCCATTATAATAATTAGAAATAATGAAATATGATGTATGATTATTATGAAATGTACCAGAGCC 3457
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3458 ACAAATTTTATTGAGCAATATAAAAGACAACTAGAGAAAACAAAGAAATATGCCATACCTGGATGGAAACAGTA 3531
Query 307 -------------------------------------------------------------------------- 306
Sbjct 3532 ATAATAATGTTGTGTGTTCATCTTTGACTAAATCATGTCTCATAAAATTTCAATAAAATTCCAATTAAATTTAT 3605
Query 307 -------------- 306
Sbjct 3606 TTTTAAAACATGGC 3619
