Construct: ORF ccsbBroad304_10302

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013639.1_s304c1, BRDN0000401308
Derived from:
ccsbBroadEn_10302
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NCOR1P1 (149934)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10302
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 149934 NCOR1P1 nuclear receptor corepresso... NR_003678.1 73% 1_55del;362_419del
2 human 105379511 LOC105379511 nuclear receptor corepresso... NR_135512.1 52.4% (many diffs)
3 human 105379562 LOC105379562 uncharacterized LOC105379562 XR_951438.2 36.4% (many diffs)
4 human 105379562 LOC105379562 uncharacterized LOC105379562 XR_951439.2 36.2% (many diffs)
5 human 9611 NCOR1 nuclear receptor corepressor 1 NM_001190438.1 10.4% 9.8% (many diffs)
6 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_934337.2 8.1% (many diffs)
7 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_429862.3 8.1% (many diffs)
8 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_934336.2 8% (many diffs)
9 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_934335.2 8% (many diffs)
10 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_934334.2 7.9% (many diffs)
11 human 101930665 LOC101930665 uncharacterized LOC101930665 XR_934333.2 7.9% (many diffs)
12 human 105372582 LOC105372582 uncharacterized LOC105372582 NR_135006.1 7% (many diffs)
13 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025420.2 4.1% 3.8% (many diffs)
14 human 9611 NCOR1 nuclear receptor corepressor 1 NM_001190440.1 4% 3.8% (many diffs)
15 human 9611 NCOR1 nuclear receptor corepressor 1 XM_011524086.3 4% 3.8% (many diffs)
16 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025419.2 4% 3.8% (many diffs)
17 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025418.2 3.9% 3.7% (many diffs)
18 human 9611 NCOR1 nuclear receptor corepressor 1 XM_011524085.3 3.9% 3.7% (many diffs)
19 human 9611 NCOR1 nuclear receptor corepressor 1 NM_006311.4 3.9% 3.6% (many diffs)
20 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256875.4 3.9% 3.6% (many diffs)
21 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025417.2 3.9% 3.6% (many diffs)
22 human 9611 NCOR1 nuclear receptor corepressor 1 XM_006721604.4 3.8% 3.6% (many diffs)
23 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025416.2 3.8% 3.6% (many diffs)
24 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025415.2 3.8% 3.6% (many diffs)
25 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256874.5 3.8% 3.6% (many diffs)
26 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256873.5 3.8% 3.5% (many diffs)
27 human 9611 NCOR1 nuclear receptor corepressor 1 XM_006721603.4 3.8% 3.5% (many diffs)
28 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256872.5 3.8% 3.5% (many diffs)
29 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025409.2 3.8% 3.5% (many diffs)
30 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025410.2 3.8% 3.5% (many diffs)
31 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025411.2 3.8% 3.5% (many diffs)
32 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025412.2 3.8% 3.5% (many diffs)
33 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025413.2 3.8% 3.5% (many diffs)
34 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025414.2 3.8% 3.5% (many diffs)
35 human 9611 NCOR1 nuclear receptor corepressor 1 XM_024451043.1 3.8% 3.5% (many diffs)
36 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256871.5 3.8% 3.5% (many diffs)
37 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025403.2 3.8% 3.5% (many diffs)
38 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025404.2 3.8% 3.5% (many diffs)
39 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025405.2 3.8% 3.5% (many diffs)
40 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025406.2 3.8% 3.5% (many diffs)
41 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025407.2 3.8% 3.5% (many diffs)
42 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025408.2 3.8% 3.5% (many diffs)
43 human 9611 NCOR1 nuclear receptor corepressor 1 XM_024451042.1 3.8% 3.5% (many diffs)
44 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256868.5 3.7% 3.5% (many diffs)
45 human 9611 NCOR1 nuclear receptor corepressor 1 XM_006721602.4 3.7% 3.5% (many diffs)
46 human 9611 NCOR1 nuclear receptor corepressor 1 XM_011524084.3 3.7% 3.5% (many diffs)
47 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025400.2 3.7% 3.5% (many diffs)
48 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025401.2 3.7% 3.5% (many diffs)
49 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025402.2 3.7% 3.5% (many diffs)
50 human 9611 NCOR1 nuclear receptor corepressor 1 XM_024451041.1 3.7% 3.5% (many diffs)
51 human 9611 NCOR1 nuclear receptor corepressor 1 XM_005256866.5 3.7% 3.5% (many diffs)
52 human 9611 NCOR1 nuclear receptor corepressor 1 XM_006721601.4 3.7% 3.5% (many diffs)
53 human 9611 NCOR1 nuclear receptor corepressor 1 XM_011524083.3 3.7% 3.5% (many diffs)
54 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025396.2 3.7% 3.5% (many diffs)
55 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025397.2 3.7% 3.5% (many diffs)
56 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025398.2 3.7% 3.5% (many diffs)
57 human 9611 NCOR1 nuclear receptor corepressor 1 XM_017025399.2 3.7% 3.5% (many diffs)
58 mouse 20185 Ncor1 nuclear receptor co-repress... NM_177229.3 31% 29.8% (many diffs)
59 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314391.1 4% 3.8% (many diffs)
60 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532628.3 3.8% 3.7% (many diffs)
61 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314390.1 3.8% 3.6% (many diffs)
62 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314389.1 3.8% 3.6% (many diffs)
63 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314388.1 3.8% 3.6% (many diffs)
64 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314387.1 3.8% 3.6% (many diffs)
65 mouse 20185 Ncor1 nuclear receptor co-repress... NM_011308.3 3.7% 3.6% (many diffs)
66 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532627.3 3.7% 3.6% (many diffs)
67 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314386.1 3.7% 3.6% (many diffs)
68 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532626.3 3.7% 3.6% (many diffs)
69 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314385.1 3.7% 3.6% (many diffs)
70 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314384.1 3.7% 3.6% (many diffs)
71 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314383.1 3.7% 3.6% (many diffs)
72 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314382.1 3.7% 3.5% (many diffs)
73 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314381.1 3.7% 3.5% (many diffs)
74 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314380.1 3.7% 3.5% (many diffs)
75 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314379.1 3.7% 3.5% (many diffs)
76 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532625.3 3.7% 3.5% (many diffs)
77 mouse 20185 Ncor1 nuclear receptor co-repress... NM_001252313.1 3.6% 3.5% (many diffs)
78 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532624.3 3.6% 3.5% (many diffs)
79 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532623.3 3.6% 3.5% (many diffs)
80 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314378.1 3.6% 3.5% (many diffs)
81 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314377.1 3.6% 3.5% (many diffs)
82 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314375.1 3.6% 3.5% (many diffs)
83 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314376.1 3.6% 3.5% (many diffs)
84 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314374.1 3.6% 3.5% (many diffs)
85 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314373.1 3.6% 3.5% (many diffs)
86 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314372.1 3.6% 3.5% (many diffs)
87 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314371.1 3.6% 3.5% (many diffs)
88 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532621.3 3.6% 3.5% (many diffs)
89 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314370.1 3.6% 3.5% (many diffs)
90 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314368.1 3.6% 3.4% (many diffs)
91 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314369.1 3.6% 3.4% (many diffs)
92 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314367.1 3.6% 3.4% (many diffs)
93 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314366.1 3.6% 3.4% (many diffs)
94 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532620.3 3.6% 3.4% (many diffs)
95 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314365.1 3.6% 3.4% (many diffs)
96 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532619.3 3.5% 3.4% (many diffs)
97 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314364.1 3.5% 3.4% (many diffs)
98 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314362.1 3.5% 3.4% (many diffs)
99 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314363.1 3.5% 3.4% (many diffs)
100 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532618.3 3.5% 3.4% (many diffs)
101 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314361.1 3.5% 3.4% (many diffs)
102 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314360.1 3.5% 3.4% (many diffs)
103 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314359.1 3.5% 3.4% (many diffs)
104 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532613.3 3.5% 3.4% (many diffs)
105 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532614.3 3.5% 3.4% (many diffs)
106 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532615.3 3.5% 3.4% (many diffs)
107 mouse 20185 Ncor1 nuclear receptor co-repress... XM_006532616.3 3.5% 3.4% (many diffs)
108 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314356.1 3.5% 3.4% (many diffs)
109 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314357.1 3.5% 3.4% (many diffs)
110 mouse 20185 Ncor1 nuclear receptor co-repress... XM_017314358.1 3.5% 3.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
375
ORF length:
306
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtcaagttca ggttaccctc ccaaccaagg agcattcagc acagaacaaa
121gtcattatcc tcctcactct gtaaagtata cgtttcccag cacccaccac cagcaggatc
181cagcatttgg aggcaaacat gaagctccat cctctccaat tctggggcaa ccgtgtggag
241atgatcaaaa tgcttcacct tcaaaacttt caaaggaaga gttaatagag tgtatggatc
301gtgtagatcg agaaattgca aaagtagaac agcagatcct taaactgaaa aagaaacaag
361taaaagtctt cgtcttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
421ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
481cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)