Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10528
- Subject:
- NR_023386.1
- Aligned Length:
- 5412
- Identities:
- 277
- Gaps:
- 5123
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAATTACAGGCTTGAGCCACTGCGCCTGGCCTGGTCTAGTCTCCTTTTAGAGATGAGAAAACTGAGGCTCAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGTAACCTGTTCAAGGTCATGAACTGTCTTGAAGACCATAGTTGCAAGTGACAGAGCTGGGTCTCAGATGCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTCAGACCTGATACTGACTCCAGAGCTGTGCGCCTAAGCACTAGAGCACATAGCCTCCTTGCCCCAGGGAAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AACAATGGGAGGTTGTGGGTGACCTCTGGGTCTCAGGGCCCTGGGATATAGGGACTGTGCCTTTTTTTTTTTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTTTTTGAGACAAAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGCCTCCCAGGTTCAATTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGGCTAATTTTTGTATTTTTGGTGGAGATGGGGTTTCGCCATATTGATCAGGCTGGTCTCGAACTCCTGACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCAGGTGATCCGCCTGCCTTGGCCTCCCAAAATGCTGAGATTACAGGTGTGAGTGCCCATGCCTGGCAGGACTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCCTTTTGCATTTTCAAATGAAGGAAATGAGTATTTCTTGAGTGTTGACCGTGTGTCCCCCCGGCACCGTGTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGTGCTGGTTATGCACACACGATATTCTGTTTCATCCCCGGACAGCTCTGTGAGCCCCCACCCCAGAGCCTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGTTGCAGAGGCAGCTACAGGAGGAGCAGGCCTCCTACCAGCGCAAGCTGCAGGCCTACCTGGAGGGCCAGCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGGCAGGCCCAGCTTGTGTGCAGCGGCTGCAGGGCAAGTACAAGAAGAGGTACTCGGAGCTGGAGCAGCAGCTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGGAGAGATCCGGAGAGCTGGAGCAGCAGCGGCTAAGGGACACAGAGCACAGCCAAGACCTGCAGAGTGCCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATCCGGCTGGAGGAGGAGCCGCAGAGGAGTGCCAGCCTGGCCCAGGTGAAAGCCATGCTCCGAGAACATCTGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCAGGCAGGCTCGGCCAACCAGGCTCTGAGTGAGGACATACAAAAGGTGACCAATGACTGGACACGCAGCCGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGGAGCTGGAGCAGCGGGAGGCGGCATGGAGGCGCGAGGAGGAGGACCTGCTGCAGCTGGGAGGGGAGCTGGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCGGACATCACGAGCTGTCCAGGAGGCGGGCCTGGGACTGAGCACGGGCCTGTGGCTGGCAGAGAGCCGGGCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGCAGCCCTGGAGAAGCAGGCCCTGCTGCAGGCCCAGCTGGAGGAGCAGCTGCGGGACAAGGTGCTCCACTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGGACCTGGCCCAGCAGCAGATGCAAAGTGACCTGGACAAGGCTGACCTCAGTGCCAGAGTGACAGAGCTGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTGGCAGTGAAGCGTCTTCAGAAGCAGAATCCGGAGAAGGATCAGGTCAACACGGACCTCACTGAGAAGCTTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGGCCCTGGAATCCCTGCGGCTACAGGAGCAGGTGGCCCTGGAGACAGAGGACGGAGAGGGGCTACAGCAGAGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTAAGGGACCTGGCACAGTCCGTCCTGTCGGACACAGAGCGGCGTCCAGCTGAGCGGCTCCGAGCGCACCGCGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGACTCCTTCGGCAGCCTGCGGGGGCTCTCGGCCCAGCAGACCCCGTCCCCACCGCGGCGCTCCTCGCCCGGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGAGGCCGTTCACCCCGCCGAGGCCCCTCCCCGGCCTGCTCAGACTCCTCCACGCTCGCCCTGATCCACTCCAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTACACAAGCACGAGCTGCAGGTCCAGGACATGCGTGGGCGCTATGAGGCAAGCCAGGACCTGCTGGGCACCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCGGAAGCAGCTTAGCGACAGCGAGAGTGAGCGGCGGGCCCTAGAGGAACAGCTGCAGCGCCTGCGGGACAAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACCGACAGCACCATGCAGGCCCACGAGGACGCCCAGCGCGAGGTGCAGCGGCTGCGGAGCGCCAAAGAGCTCCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGAAGGGAGAAGAGCAACCTGGCCCACAGCCTGCAGGTGGCCCAGCAGCAGGCCAAGGAGCTGCGGCAGGAGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAAGAAGCTGCAGGCTGCCCAGGAGGAGCTGCGGCGCCAGCGGTACTGGCTGGGGGAAGAGCAGGAGGACGCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGCAGGATGGTGTGCGGGTGCGCCGGGAGCTTGAGCACAGCCATAGACAACTGGAGCAGCTGGAAGGGAAGCG 2220
Query 1 -------------------------------------------------------------------ATGCTGC 7
|||||||
Sbjct 2221 CTCAGTCCTGGCCAAGGAGCTGGTGGAGGTGAGGGAGGCGCTGAGCCGCGCCACACTGCAACGGGACATGCTGC 2294
Query 8 AGGCCAAGAAGACCGAGGTGGCCGAGGCGCTGACCAAGGCTGAGGCTGGCCGCATGGAGCTCGAGCTCTCCGTG 81
|||||.|||||.||||||||||||||||||||||||||
Sbjct 2295 AGGCCGAGAAGGCCGAGGTGGCCGAGGCGCTGACCAAG------------------------------------ 2332
Query 82 ACCAAGCTGAGGGCAGAGGAGGCCTCCCTGCAGGACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC 155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 -----GCTGAGGGCAGAGGAGGCCTCCCTGCAGGACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC 2401
Query 156 TCAGGACAAGTTGGATCTGAACTGCCTTGTCACC-------CAGCTGGAGGAAGAAAAG---GCCATGCTGCAG 219
||||||||||||||||||||||.||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 2402 TCAGGACAAGTTGGATCTGAACCGCCTTGTCACCCAGGCCACAGCTGGAGGAAGAAAAGTGCGCC---CTGCAG 2472
Query 220 GGCCGGCAGCGGCAGGCGGAGCAGGAGGCCACAGTGGCGCCGGCAGAGCAGGAGTGGCTGGAGGAGCTGTGGTT 293
||||||||||||||||||.|||||||||||||||||||.|.||.||||||||||.|||||||||.||||.||||
Sbjct 2473 GGCCGGCAGCGGCAGGCGAAGCAGGAGGCCACAGTGGCACGGGAAGAGCAGGAGCGGCTGGAGGCGCTGCGGTT 2546
Query 294 GGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTA---------------------------------- 333
|||.|||||||||||.||||||||||||||||||||||||
Sbjct 2547 GGAACAGGAGGTGGCGCGGCAGGGCCTGGAGGGCTCCCTATGAGCGGCGGAGCAGGCCCAGGAGGCAGTGGAGC 2620
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2621 AGCAGCTCCCCACGCTGCATCATGAGTGCAGCCGGCTGCAGGAGCAGCTAGCGCAGAAACACCCTCAAAGACAC 2694
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2695 AGTGAGAAATAATGTCTAACCAAATGTCTGGGCACCCCCGACCCAGGCAAATTGACACAAAAATTAATTTTCAC 2768
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2769 AAATACTATCAATAGAAGTGACTAATAAATGTGGCATCATGTCCTGCCTGTTTATCCCATGACAATTAGTATAG 2842
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2843 TCGAGCGTAACATTGGCTTCCGTTCCCTTATAGTAGCAACATGTAGGAGTTTCATTTAAAGTGAGGATAATTTT 2916
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2917 GACCTTACAGAGTTTCTCCCTACCCCTATCTACCATTGCCACTTGTGGATTGTCATTTTGCCATGACTTTCTTT 2990
Query 334 -------------------------------------------------------------------------- 333
Sbjct 2991 TAAAAAATATCAATAAGCTCTATACTTCAGTAATGTAAGTTTGAATTTCATCCTGGCTGCATAAGTCACTTTCC 3064
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3065 ATTTTGACAAAGTCTAGAAATATTTTTCTCCATCTCCTTGAATATGGGTAATGGATACCTATTGTGGGGCCCAC 3138
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3139 TCTCAATCTCATGGTTTTATTTTAATTTAGTTCTCAATAGATATGCCTCAGCTGCTTAAAAACCATTGAAAATG 3212
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3213 GCCCATGGCCTTGTCCATCTAACAGAGTCCAGTAAAATCCTGACAATGGAATGGGGAGAGAGAAAGTGAGAACC 3286
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3287 ACCAAACTCAGCACAAAACGACTGAGTTTAAACCTCTGTGCTAAGAGATGATCAGAGTCTATCATGGCTTCTAG 3360
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3361 TAGCATGAGACCATGTCTCACGAATGACCCTAGGCTCCCATGACAATGCCTACCTAAGAAAGCTCAAGGCTGCC 3434
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3435 AGGGGAACTTACTTTAGTCTAGCCAATACTTGATGATGGCAGTTTCAGGATCTTTCTTTCTTATAGCACTTACT 3508
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3509 AAGAAGGGAATCCTTCCTCCATCCCTTTGATATATGTGTGTATCTCCTAGGGACTTCAATGTATCTTTGCCCAG 3582
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3583 GATCTGAAAGGCAATACTTTTGAGGTGTAGTTCTCAGGAAGGACTGAGCCTCTGTCTTCCAGTCTCTGTGGGAG 3656
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3657 GTTAGAATCCTAACTTCTAATATTGCCAGCTGGCAGACACAGCTGTCCTGATGAGGCAGACATTTAAAATGACC 3730
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3731 AATCTTTTGTAATGTTTCACTTGTGCCCTGCCCCCTGCCCTCTCCCCTGCCTCTCTCTCCCATTAGAATGCCAT 3804
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3805 CACCTCTGCACAAATGCGAACAGAACCAGCCCCTTCCTCTACGGTCAGTAGTTACTGAATAAAATTGGTTTTCA 3878
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3879 TCGATTTGACTAATGTCTGATATATCTTTGACAAAATAAGTGTGAATGATTGTTTTTAGAGACACGGCAGCTGC 3952
Query 334 -------------------------------------------------------------------------- 333
Sbjct 3953 AAAGAGAGGCACAGACATGGCAGGAGAGGGAGGGGTCACCTGACCCTTCTCATTTCATAGGCATCTATTCCTGC 4026
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4027 CTGGTGTTTATGAGCCTGAGACTTGGCAGGGCTGTCCTGGTATATAACTCCATGGCTCTGCAGCAAGACTCGAA 4100
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4101 TAGGCTGGTGGTGACACTTGGTGTGACCAGTCACCTTCAAAGATGCCATTAAGGGTTCACAAGAAAATGAAGGG 4174
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4175 AAACAGAAAAACTGATTATGAAAGTTGTTGCCTCTCCTGCTTCTTCATACAGAGTGTGTATGATATTGCTGTGT 4248
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4249 GATGTTAGACTGCAACTTAGCCCAACAGCTGTTCTAGTAATTGGCAGTTTCTCATCGAGTTAAGCCTACCTGAT 4322
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4323 AAAGAAGCACGCTTACATTTATTGATTACCCCCGTAAAATGAACAATACATCCAACAAGGCTTCTAGCAAAAAT 4396
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4397 GTTCTTATTAACCTCCTTTTTATACTAAGGAAAAACTGGGTACAACACAAATCTTCATCAACAGAAGAATACCA 4470
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4471 ACTGTTATACAGTCATAAAACGATCCCAGAAGTTCACTCCATACCATCAAAACCAGGAACCCACACTGATGCCC 4544
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4545 CTGATGGCAGAAAATCATGATACAAAAATGAGAGAAACGAGAGAGAGAAAATGTACTAGAGTCATGGTAGTGGG 4618
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4619 TAAAAGCCAAAGAGCTCAGTTTCTACTCATGATATTCATTAGAAGAACCAAAGGAACATGAGCCAACAGCTGTA 4692
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4693 AGGGTCCAGGTCTGCACAAGGTGCCTGTTGGGTGCAGGGTTCTGTTGGCTCCAGTGATATATCTCAGGTGGGCT 4766
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4767 AATTTTTACGGACATAGCCGCTGCAAAAATCTATCAAACAATAATAAAGGGATAGCTACTTGCATGCTAATTTA 4840
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4841 CCATTGTATAGAAGGGAGAACAGGCATCAGATTGTTTTCGTCAAATAAAAGCAAAACCAAGATTTATGAAGAAA 4914
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4915 AGAGGAAAGAGGAAAAAAAATCGCCTGGGACCTTTGTGATTTTGCTCCCCTTGGATAAGAGACTTGACAGAAAG 4988
Query 334 -------------------------------------------------------------------------- 333
Sbjct 4989 CTTTCAAAGAGGTCACTGTGGCCTGTCTTCTTGAGACACACGACACTTGTTCACCACGGAAAACAATTACAGAT 5062
Query 334 -------------------------------------------------------------------------- 333
Sbjct 5063 GTTGGAGGACTTTAAAATATCCTAGTTTAGCAGTTCATCCTATGCCACAGAATCTGTGTGTGATGTCCACCATG 5136
Query 334 -------------------------------------------------------------------------- 333
Sbjct 5137 TCCTTCTGTGGTACACCCCTTCAGTTAAGCCAGGAGGGTGCCTCTCCCCTCAGTGGAATATCATACATCAATGT 5210
Query 334 -------------------------------------------------------------------------- 333
Sbjct 5211 GTAGAAAGTTTGTTGTGCTGGCAAGTAAATGACAAAAGGGACATTGATAGAATTAGGAAACAAATTGGAATATG 5284
Query 334 -------------------------------------------------------------------------- 333
Sbjct 5285 ATCTGTTACCGTTCCCATGGAAGATAAATTTGCAGAATATACTCAAATTAGAAGCATTAAATAAATGCTGTAAT 5358
Query 334 ---------- 333
Sbjct 5359 TTAAAATGGC 5368
