Construct: ORF ccsbBroad304_10528

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002028.1_s304c1, BRDN0000407745
Derived from:
ccsbBroadEn_10528
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CROCCP2 (84809)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10528
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84809 CROCCP2 CROCC pseudogene 2 NR_026752.1 18.7% (many diffs)
2 human 9696 CROCC ciliary rootlet coiled-coil... XR_002958164.1 6.3% (many diffs)
3 human 9696 CROCC ciliary rootlet coiled-coil... XM_006711058.3 5.3% 5% (many diffs)
4 human 9696 CROCC ciliary rootlet coiled-coil... XM_024451092.1 5.3% 5% (many diffs)
5 human 9696 CROCC ciliary rootlet coiled-coil... XM_017002915.2 5.2% 4.9% (many diffs)
6 human 9696 CROCC ciliary rootlet coiled-coil... NM_014675.5 5.1% 4.9% (many diffs)
7 human 9696 CROCC ciliary rootlet coiled-coil... XM_017002914.2 5.1% 4.8% (many diffs)
8 human 114819 CROCCP3 CROCC pseudogene 3 NR_023386.1 5.1% (many diffs)
9 human 9696 CROCC ciliary rootlet coiled-coil... XM_011542470.3 5% 4.7% (many diffs)
10 human 9696 CROCC ciliary rootlet coiled-coil... XM_024451090.1 4.9% 4.6% (many diffs)
11 human 9696 CROCC ciliary rootlet coiled-coil... XM_017002913.2 4.8% 4.6% (many diffs)
12 human 9696 CROCC ciliary rootlet coiled-coil... XM_011542468.2 4.8% 4.6% (many diffs)
13 human 9696 CROCC ciliary rootlet coiled-coil... XR_002958163.1 3.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
399
ORF length:
333
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gcaggccaag aagaccgagg tggccgaggc gctgaccaag gctgaggctg
121gccgcatgga gctcgagctc tccgtgacca agctgagggc agaggaggcc tccctgcagg
181actccctgtc caagctgagc gccctcaacg agagccttgc tcaggacaag ttggatctga
241actgccttgt cacccagctg gaggaagaaa aggccatgct gcagggccgg cagcggcagg
301cggagcagga ggccacagtg gcgccggcag agcaggagtg gctggaggag ctgtggttgg
361agcaggaggt ggcacggcag ggcctggagg gctccctatg cccaactttc ttgtacaaag
421tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
481gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)