Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10588
- Subject:
- NM_001293707.1
- Aligned Length:
- 2710
- Identities:
- 1305
- Gaps:
- 1193
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGTCCGCCTCCTCAGGGCCAGCGGCGGCCGGGTTTTCATCCCTTGATGCCGGGGCCCCTGCTGGTACCGC 74
Query 1 ----------------------------ATGGCATCTGAGGTGCCTTATGCCTCTGGCATGCCCATCAAGAAAA 46
|..|.||||||||..||||..|||||||.||||||..|.||.||||
Sbjct 75 AGCAGCAGCATCTGGAATCAAGAGAGCCACAGTATCTGAGGGACCTTCCGCCTCTGTCATGCCTGTTAAAAAAA 148
Query 47 TAGGCCATAGAAGTGTTGATTCCTCAGGAG---------------GGACAACCTCATCAGCCTTGAAAGGTGCC 105
||||||||.||||||||||||||||.|||| .||||||.|||||||||||||||||||||
Sbjct 149 TAGGCCATCGAAGTGTTGATTCCTCTGGAGAGACTACATACAAGAAGACAACTTCATCAGCCTTGAAAGGTGCC 222
Query 106 ATCCAGTTAGGCATTACCCACACTGTGGGGAGCCTGAGTACCAAACCAGAGAGTGATGTCCTCATGCAAGATTT 179
||||||||||||||.||.|||||||||||.||||||||.||||||||||||.|||||||||||||||||||.||
Sbjct 223 ATCCAGTTAGGCATCACTCACACTGTGGGCAGCCTGAGCACCAAACCAGAGCGTGATGTCCTCATGCAAGACTT 296
Query 180 CCACATGGTGGAGAGTATCTTCTTTCCCAGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGCCTTTC 253
|.||.||||||||||.|||||.||.|||||||||||.|||||||||||.||.|||||.||.|||||||.|||||
Sbjct 297 CTACGTGGTGGAGAGCATCTTTTTCCCCAGTGAAGGCAGCAACCTGACACCGGCTCACCATTACAATGACTTTC 370
Query 254 GTTTCAAGACCTATGCACCTGTTGCCTTCCGCTACTTCTGGGAGCTATTTGGTATCCGGCCCGATGATTACTTG 327
|.||||||||||||||.||||||||||||||.||||||.|.|||||.|||||.||||||||.||||||||||||
Sbjct 371 GATTCAAGACCTATGCGCCTGTTGCCTTCCGTTACTTCAGAGAGCTCTTTGGCATCCGGCCTGATGATTACTTG 444
Query 328 TATTCCCTCTGCAGTGAGCCGCTGATTGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTGTTCTATGTGTCCAG 401
||.|||||.|||||||||||..||||||||||||..|..||||||||||||||||||||.||||||||||||||
Sbjct 445 TACTCCCTTTGCAGTGAGCCATTGATTGAACTCTCCAATTCTGGAGCTAGTGGTTCCCTCTTCTATGTGTCCAG 518
Query 402 CGACGATGAGTTCATTGTTAAGACAGTCCGACATAAAGAAGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATACT 475
.||.|||||.|||||..|||||||.||||..|||||||||||.||.||||||||||||.|||||||||||||||
Sbjct 519 TGATGATGAATTCATCATTAAGACCGTCCAGCATAAAGAAGCAGAATTTCTGCAGAAGTTGCTTCCAGGATACT 592
Query 476 ACATAAACCTCAACCAGAACCCTCGGACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAGACAGGTGGC 549
||||.||.||.|||||.||||||||.|||||||||||.|||||.||||||.|||||||||||||..||||.|||
Sbjct 593 ACATGAATCTTAACCAAAACCCTCGTACTTTGCTGCCCAAATTTTATGGATTGTACTGTGTGCAAGCAGGCGGC 666
Query 550 AAGAACATTCGGATTGTGGTGATGAACAATCTTTTACCAAGATCGGTAAAAATGCATATCAAATATGACCTCAA 623
||||||||.||.||||||||||||||||||||.||.||..|.||.||.|||||||||||.|||||||||||.||
Sbjct 667 AAGAACATACGAATTGTGGTGATGAACAATCTCTTGCCTCGGTCAGTCAAAATGCATATGAAATATGACCTGAA 740
Query 624 AGGCTCAACCTACAGGCGGCGGGCTTCCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACT 697
.||.|||||.||||.||||||||||||.||||||||.||||||||..||||.|||||.|||||||||||.||||
Sbjct 741 GGGTTCAACTTACAAGCGGCGGGCTTCTCAGAAAGAACGAGAGAAAACTCTCCCCACCTTTAAAGACCTGGACT 814
Query 698 TCTTACAAGACATCCCTGATGGTCTTTTTTTGGATGCTGACGTGCACAACGCTCTCTGTAAGACCCTGCAGCGT 771
||.|||||||.||||||||.||.||.|||||||||||||||.||.|||..|||||.||||||||.||.||||||
Sbjct 815 TCCTACAAGATATCCCTGACGGCCTATTTTTGGATGCTGACATGTACAGTGCTCTGTGTAAGACTCTACAGCGT 888
Query 772 GACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGATTATAGCCTCTTGATGTCAATCCATAATATAGATCATGC 845
|||||||||||||||||||||||||||||||||||.||.|||||.||||||||.|||||.||.||.||.|||||
Sbjct 889 GACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGACTACAGCCTGTTGATGTCCATCCACAACATGGACCATGC 962
Query 846 ACAACGAGAGCCCTTAAGCAGCGAAACACAATACTCAGTTGATACTCGAAGACCAGCCCCCCAAAAGGCTCTGT 919
|||..|.||||||...||||..||.|||||.|||||.|.|||.||.||.|||||||||||.||.|||||.||.|
Sbjct 963 ACAGAGGGAGCCCACGAGCAATGACACACAGTACTCGGCTGACACGCGCAGACCAGCCCCACAGAAGGCGCTCT 1036
Query 920 ATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTCGACGGGGTGGCACCATGGAGACCGATGACCATATGGGT 993
||||||||||.|||||||||||||||||.||||||||||||||.|||||..|||||||.||.|||||.||||||
Sbjct 1037 ATTCCACAGCTATGGAATCCATCCAGGGCGAGGCTCGACGGGGCGGCACTGTGGAGACTGAGGACCACATGGGT 1110
Query 994 GGCATCCCTGCCCGGAATAGTAAAGGGGAAAGGCTTCTGCTTTATATTGGCATCATTGACATTCTACAGTCTTA 1067
|||||||||||||||||||..|||||.||||||||.|||||||||||||||||||||||.|||||.|||||.||
Sbjct 1111 GGCATCCCTGCCCGGAATAACAAAGGAGAAAGGCTCCTGCTTTATATTGGCATCATTGATATTCTTCAGTCCTA 1184
Query 1068 CAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGATACATGACGGAGACACTGTCTCAGTGCATCGCC 1141
||||||||||||||||||||||||||||||||||||.|||.|.|||||.||.||.||.||.|||||||||||.|
Sbjct 1185 CAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCACTGGTCCATGATGGGGATACGGTGTCAGTGCATCGTC 1258
Query 1142 CAGGCTTCTATGCTGAATGGTTCCAGCGCTTCATGTGCAACACGGTATTTAAGAAGATTCCCTTGAAGCCTTCT 1215
||||||||||||||||..||||||||||.||||||||||||||.||.||.||||||||||||||||||||||||
Sbjct 1259 CAGGCTTCTATGCTGAGCGGTTCCAGCGTTTCATGTGCAACACAGTGTTCAAGAAGATTCCCTTGAAGCCTTCT 1332
Query 1216 CCTTCCAAAAAACTTCGGTCTGGCTCATCTTTCTCTCAGCGAGCAGGCTCCAGTGGCAACTCCTGCATTACTTA 1289
|||.|||||||..|||||||||||.|.||||||||||.||||.|||||.||||.|||||||||||| ||.|.
Sbjct 1333 CCTACCAAAAAGTTTCGGTCTGGCCCGTCTTTCTCTCGGCGATCAGGCCCCAGCGGCAACTCCTGC---ACCTC 1403
Query 1290 CAAGCCATTGGTCTCTGGGGAACACAAGGCACAAGTGACAACAAAGGCGGAAGTGGAGCCAGGTGTTCACCTTG 1363
|.|||...|||.||||||||||||||..|||||||||||.||.|||||||||||||||||||.|||.|||||||
Sbjct 1404 CCAGCTGATGGCCTCTGGGGAACACAGAGCACAAGTGACCACCAAGGCGGAAGTGGAGCCAGATGTACACCTTG 1477
Query 1364 GTTGTCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGGCTCACCTACTCCTGACCCCAGT 1437
|..||||||||||.|||||||||||||||||||||||||||||.||||||||.||||||..|||||.|||||||
Sbjct 1478 GGCGTCCTGATGTCTTACCTCAGACTCCACCTTTGGAGGAAATAAGTGAGGGTTCACCTGTTCCTGGCCCCAGT 1551
Query 1438 TTCTCACCTCTAGTTGAAGAGACTTTGCAAATGCTA------ACTACAAGCGTGGACAACAGTGA-GTATATGG 1504
|||||||||.||||||.|.|..||||||||||.||| |.|.|||.|.||||.||...||| || ||.
Sbjct 1552 TTCTCACCTGTAGTTGGACAACCTTTGCAAATACTAAATTTGAGTTCAACCTTGGAAAAGCTTGATGT---TGC 1622
Query 1505 GGAATGGAGACTTCTTACCCACCCGGCTGCAGGCCCAGCAGGATGCTGTCAACACAGTTTGTCATTCAAAGACC 1578
.||.| .|||.||| ||||||
Sbjct 1623 AGAGT-CAGAGTTC--ACCCAC---------------------------------------------------- 1641
Query 1579 CGCAGCAACCCTGAGAACAACGTGGGCCTTATCACACTGGATAATGACTGTGAAGTGCTGACCACACTCACCCC 1652
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 1653 AGACACTGGCCGTATCCTGTCCAAGCTACATACTGTCCAACCCAAGGGCAAGATCACCTTCTGCATGGGCATCC 1726
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 1727 ACGTGGCCCATCTGGCTCTGAAGCACCGACAAGGCAACAATCACAAGATCCGCATCATTGCCTTTGTGGGAAAC 1800
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 1801 CCGGTGGAGGACAATGAGAAGAATCTGGTGAAACTGGCTAAATGCCTCAAGAAGGAGAAAGTAAATGTTGACAT 1874
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 1875 TATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATG 1948
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 1949 GAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCCAGTTTGGCTGATGCTCTCATCAGTTTTCCGATTTTG 2022
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2023 GCTGGTGAAGGTGGTGCCATGATGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCC 2096
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2097 TGAGCTGGCCTTGGTCCTTCGTGTATTTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCCCGGCAGGCAG 2170
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2171 CTGCAGCTTCTGCTGCTGAGGCCGGGATTGCTACGACTGGGACTGAAGACTCAGACGATGCCCTGCTGAAGATG 2244
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2245 ACCATCAGCCAGCAAGAGTTTGGCCACACTGGGCTTCCTGACCTAAGCAGTATGACTGAGGAAGAGAAGATTGT 2318
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2319 TTGTGCCATGCAGATGTCCCTGCAGGGAGCAGAGTTTGGCCTGGCAGAATCAGCAGACATTGATGCCAGCTCAG 2392
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2393 CCATGGACACATCTGAGCCAGCCAAGGAGGAGGATGATTACGACGTGATGCAAGACCCTGAGTTCCTTCAGAGT 2466
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2467 GTCCTAGAGAACCTCCCAGGTGTGGATCCCAACAATGAAGCCATTCGAAATGCTGTGGGCTCCCTGGCCTCCCA 2540
Sbjct 1642 -------------------------------------------------------------------------- 1641
Query 2541 GGCCACCAAGGACAGCAAGAAGGACAAGAAGGAGGAAGACGAGAAG 2586
Sbjct 1642 ---------------------------------------------- 1641
