Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10735
- Subject:
- XR_382743.3
- Aligned Length:
- 5253
- Identities:
- 533
- Gaps:
- 4643
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGAGAGCCCGTGTTGTTGCATCCCCCAGTTCCCCGGTCTGTCATGGCAGCGCCCAGGCCTCCAGCCGGTGTGTG 74
Query 1 --------ATGCTGGGGTTTTTGTCCGCACGCCAAACGGGTTTGGAGGACCCTCTTCGCCTTCGGAGAGCAGAG 66
|||.||.|.|||||||||||.||.||..|||||||||||||||||||||||.|.||.|||||..||
Sbjct 75 GACCCGAGATGTTGAGCTTTTTGTCCGCTCGACAGTCGGGTTTGGAGGACCCTCTTCGCTTGCGTAGAGCGCAG 148
Query 67 TCAACACGGAGAGTTTTGGGACTGGAATTAAATAAAGACAGAGATGTTGAAAGAATCCACGGCGGTGGAATTAA 140
||.||||||||.||..||||.|||||.|||||.||||||||.|||||.|||||||||||.|||.||||..||||
Sbjct 149 TCCACACGGAGGGTCCTGGGGCTGGAGTTAAACAAAGACAGGGATGTGGAAAGAATCCATGGCAGTGGGGTTAA 222
Query 141 CACCCTTGACATTGAACCTGTTGAAGGGAGATACATGTTATCAGGTGGTTCAGATGGTGTGATTGTACTTTATG 214
||||||.||||||||.||.||||||||.|||||||||||.||||||||.||.|||||.|||.|||||||.||||
Sbjct 223 CACCCTCGACATTGAGCCCGTTGAAGGAAGATACATGTTGTCAGGTGGCTCCGATGGCGTGGTTGTACTCTATG 296
Query 215 ACCTTGAGAACTCCAGCAGACAATCTTATTACACATGTAAAGCAGTGTGTTCCATTGGCAGAGATCATCCTGAT 288
|||||||||||.||||||||||..|..||||||||||||||||||||||||||.||||||||...|||||.|||
Sbjct 297 ACCTTGAGAACGCCAGCAGACAGCCCCATTACACATGTAAAGCAGTGTGTTCCGTTGGCAGAAGCCATCCCGAT 370
Query 289 GTTCACAGATACAGTGTGGAGACTGTACAGTGGTATCCTCATGACACTGGCATGTTCACATCAAGCTCATTTGA 362
|||||||.||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 371 GTTCACAAATACAGCGTGGAGACTGTTCAGTGGTATCCTCATGACACTGGCATGTTCACATCCAGCTCATTTGA 444
Query 363 TAAAACTCTGAAAGTATGGGATACAAATACATTACAAACTGCAGATGTATTTAATTTTGAGGAAACAGTTTACA 436
|||||||||||||||.|||||||||||.|||||.||..||||||||||.|||||||||||||||||||||||||
Sbjct 445 TAAAACTCTGAAAGTGTGGGATACAAACACATTGCAGGCTGCAGATGTGTTTAATTTTGAGGAAACAGTTTACA 518
Query 437 GTCATCATATGTCTCCAGTCTCCACCAAGCACTGTTTGGTAGCAGTTGGTACTAGAGGACCCAAAGTACAACTT 510
|||||||.|||||.||||...||||||||||||||.|||||||||||||.||.|||||||||||.|||||||||
Sbjct 519 GTCATCACATGTCCCCAGCAGCCACCAAGCACTGTCTGGTAGCAGTTGGAACAAGAGGACCCAAGGTACAACTT 592
Query 511 TGTGACTTGAAGTCTGGATCCTGTTCTCACATTCTACAGGGT------------ATTTT--TATTT-------- 562
||||||||.||||||||||||||||||||||||||||||||| ||.|| .|.||
Sbjct 593 TGTGACTTAAAGTCTGGATCCTGTTCTCACATTCTACAGGGTCACAGACAGGAAATCTTGGCAGTTTCCTGGTC 666
Query 563 -------------TATTTC----AAACGGCAACTACT-----TTGAGTAAACGATTCAA-------TAAAAAGA 607
|||.|| .|||.||||.|.|| |.||||||| ||| | |.|.|||
Sbjct 667 ACCACGCCATGACTATATCTTGGCAACAGCAAGTGCTGACAGTAGAGTAAA--ATT--ATGGGATGTGAGAAG- 735
Query 608 AACG-------------TTAC----------------------------------------------------- 615
|.|| ||||
Sbjct 736 AGCGTCAGGATGCTTGCTTACTCTTGACCAGCATAATGGGAAAAAGTCACAAGCTGCTGAATCAGCAAACACTG 809
Query 616 -------------------------------------------------------------------------- 615
Sbjct 810 CTCACAATGGGAAAGTTAACGGCTTATGTTTTACAAGTGACGGCCTTCACCTGCTCACCATTGGCACAGACAAC 883
Query 616 -------------------------------------------------------------------------- 615
Sbjct 884 CGAATGCGCCTCTGGAATAGCTCCAGCGGGGACAACACCCTGGTGAACTATGGGAAGCACCATCGCTGTGTACG 957
Query 616 -------------------------------------------------------------------------- 615
Sbjct 958 CAGTCCACTCGGGAGAGCGGCTCGCCATGCTCAAGGGACATTACAAAAGCGTCGACTGCTGTGTGTTCCAGCCT 1031
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1032 AATTTCCAGGAACTTTACAGTGGAAGCAGGGACTGCAATATTCTTGCTTGGGTACCACCTTCCTATGAGCCAGT 1105
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1106 TCCTGATGATGACGATGAAGCTCCAGCCAAATCCCAGTTAAACCCAGCATTCGCGGACGCCTGGAGCAGCAGTG 1179
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1180 ACGAGGATGGGTGACTGTCAGCCCTGGCTCCTTGTCCATCAGACTTCCACGACAGTGTTGTGTGCACTTCAGCA 1253
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1254 CGAGCAGGGTTGTTCTTCCCGTTATTGTTGGTTTTGAGACAGTGTCTCACGATGTAACCCTGGCTAGCCTGGAC 1327
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1328 TAGCCTGGAACTCTGTATAGAGCAGACTCGGCTCACACTGGCAGCTATTCTGCCTCTGCTCCCAGGTGCTGGGG 1401
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1402 TTAGAGGTGTATACCACGTGGCCCCTCCTGTACATGTGTGTGATTGTTTGTTTCATTGTTTGTAAACTCTTCAG 1475
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1476 TCAGTTTTTAACCTGTTAATCCTGAGTTTGGGATATTTCCCTGTGTGCTTTAAAATGAGATCGATGTGTATGAT 1549
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1550 ACCCTGAAATATACTTTTCTGTCGGTTAATTAATCAGAACTTGTCTCCTTGAGCGCATTCACCAGGGTGGTGGG 1623
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1624 CCAGCCCCTACGGGCACAGCCCAAGAACAGACTTGTTATTCCCAGCTGGGACCTTCATATGTGCATCCAAGGAG 1697
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1698 CTGAAAGTATGACCCAGGAAGCTCTCAGCTCTGACTCCTGACTGTGCTGCCAGCCTGCCCTTCCCACCTTCAGG 1771
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1772 GAGGAGTTTAGCAAGGAGGATTAGAGAAACTTGTTGCAACAGTGGCATCATAATGCTAGATTTTTTACTCAAAC 1845
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1846 TGAATGGCTTCATGTAATCGAGCCTCTTCTCCCTCATATTGAATGTTAGCCACTCATGCATCTTGCAGTGTGAA 1919
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1920 CATCGTATCACATAGGCAATCCCTGACCACTTTGTATTGCTCTCAGAGGGCAGCTTACACTCAGTCTTAATTCC 1993
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1994 TTCCTGTGAAACTCAGCAAAATCCATGCAGGGATGTAGATTAAACATGAAATGCCATACAATTGTTCTTTCCTT 2067
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2068 TCCTTGTGTCAACTCAGGAGTGATTGTTATGAAGTCTCCTCCATTCTTTGTGTGTGTGTGTGTGTGTGTTAATT 2141
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2142 TAAGTTCTGTTGCTGTGATAAAATACCCTGAACAAAGACAATTTAGGAGAGAAAGTGTTTATTTCAGTTAACCT 2215
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2216 AGAATTGTTAACAAACACTTTCACTGTGACTCACTGTGGAAAAGTCAAGACAGAAGCCTCACAAAGCTAGGCAC 2289
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2290 ATGGCCTTGCAGTCAGAGAAGTGAGTGCGCAGAGCCTTCGCTGCCCAGCTAAAGTGAAGTGACCTCACGGAGAG 2363
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2364 AAATGGCTTCTCTAACTGAAACTCTATTCATGAAATCTGTGCCGAAAAGTTCCATCTAGAACAGACAAGGAAAA 2437
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2438 GATAGAAAATAAAACTTTAGAGAAATTCTGAAGACAGGCCCTGAGTTATACCAACTGTAAGATGCAAATGACTT 2511
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2512 CAGGCTGGTGTGAACACGGTGACTGACGAGGGAGGTGGGAACAGGGAGGTGGGAACAGGGAGGGTTGTGTGTTT 2585
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2586 GCGGCAAACCTGGGAAGCAGGAAATAGTAGTCATGTTTTTCATGTCTGGAATCAAATGCCTAACAAAGGAGGAA 2659
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2660 GCATCGATTCTAGCAAATGGTTTGAATGTACAGGACACCGAGGTGGAAAGAAACAGATGGTAGGAACAGCGACA 2733
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2734 GAAGCAGGAGGCAGACAAGAAGGCACAGACAGGACAGGAAGCAGCGGGGCCAGGCATGAATGTCAAGAGTGCAG 2807
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2808 TCTCAGAAAAACAGCACTGCCAGCTAGGATCTGAATACCATGGGGACATTTTACATTCATCCACCACTGGTCTC 2881
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2882 TATAGGTTCATGGCCATCTCATAATGCAAAATGCATTTGGTTCAACTTCAAAAGTCCCCGTACTCCTTCAAATC 2955
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2956 CAACCCTTGAAAGCGCTAATATTCCCTTGTTCCTGTAGAATAGACGAGTAACCATTCCCATTCCACCACAGCGG 3029
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3030 AAAGACTGGACCAAAGCAAGATGCAGACCCAGCAGAGGGAAGGAAGCTCAAGTTCCATGTCCGCACCTGGGCCT 3103
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3104 ATTATGGCATCTTGACTTCAACAGGCTCAGCTCCATTCTTTAGATCTGTTGCCAGCAGCATGCCTGGCCTTTCT 3177
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3178 TAGACCAGTTCCACCCAGTGCCTGGACCTTTCTTCCCTCAGATATGCCACACTTCTGATACCTGCAGTATCCTG 3251
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3252 GGGTCTCCACTGTGACTTGAACTTCCCCTTTACAGTTCATGCACGGCCCACTCAGGAGCTCCATGCAGGGAGCC 3325
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3326 TGGCCTCCCTTCCGTGGCTCTTCTGGAATCTCGGTGCACGCTTCCATGATACTTGGAGTTTGCAGGGCTGGAAA 3399
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3400 ACTAACACTACATAGAAAACACCAAGTGCTGCTGTCCTTCCCAGATGTAGCCTGGCACTCTTCAGCCATGGCTG 3473
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3474 CAGCAGCTTCCATGTGATCTAGGATGGGCTCTCGCTTTTGAGTAGGGAACCCTGCGGAGGCTCTCTGACTTCGG 3547
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3548 ACACCTCTGCTCTCTCTCTGAGTTCTCATGTTTATATCCTGGGACTTAGAGCCGGACTGTCTGTCGGGCTGTCG 3621
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3622 GGTGCAGAGCTAGGTTTCTTTCTCTTTCCTATCATTCACCTTACTACTAGCTGCTGTCCCCACACACACACACA 3695
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3696 CACACACACACACACTGCAAGTTTAAACTCATTCAGCTTATTTCTTGCCTAGCTGTAGATTTATCATCTTTCTA 3769
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3770 CTTTCTTCCTGTAAGTCTGGGCAGTGAGCAGTGACCATCCTCCAGCCTGTGTGCTCTGCTGGCCTGAAGCTTCC 3843
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3844 TCCACAAAGCAGTTTATCCTAAATTCAACGTCACTCGGATTATCAGGACATGGCTGATTATAACACGAGTAGCC 3917
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3918 TCTAGTTCAGTTCCAGTTTGGGTCCTCCTTCCTCTTGGACTCGAAAGCATCTCTCTTGGTGGTGTGATTTTCTG 3991
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3992 AGCTCCAGCTAAAATGGCTCAGTAAGTCTACTTACAGCATTCAGGATGTTCTTTAAGCCACAACTCTAACTTAA 4065
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4066 TCTTTCTCCTGCAAATTAGTCCCAAAGTTTGCAGGACACATAATCACATTTATCTTAGCAACAACCCTACTCCA 4139
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4140 TAGCACAAACCTTGCTCTCAGTGCCAGTTTTATTTTTTTAACATTTGTTTTTATTATTTTTATGATATGTATCG 4213
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4214 TATGGACATGTGTCGGTGAGTGCAGAGACCCGTGGAGCTCAGCAGTGTCTGATCCCCTCGGAACTGTAGTTACA 4287
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4288 GGTAGTTCTGGATGCTAAGAACCAAACTTGGGGTCTCTAGAAATACAGTACTGAGACATTTCTCCAGCGCCATG 4361
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4362 TTTTCTGTGTTAGTCTTCACACAGTGACCAAATAGCTGGCAAGAAAAAAAATAAAAATCAAAGCAAAAGGAGGA 4435
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4436 AGGATTGATTGACTTAGTTTATTAAAGCAACGAACTTAGTTCCGTCAAACCTTGCCAGAAATGGAATGGCAGAA 4509
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4510 GCCTGGCACACAGGGAATTTTGCCTTTCAGAGAATATACCAGGGAAAGCTAACTACAGAAAGAACAACCACCTT 4583
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4584 GCCTGTCACTGTGTTTAGATAGGCTGGTTACAGCAGGGCTGGGTTAGAGAGGGACTCAGTACTGGGGAGAATTA 4657
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4658 GATTGCTGCCCTATAGTTAACAGTTCAGTTGTGAATGTGGCTTTTCTTTTTGTGTGCAGGGGTTTGGTTTTGGT 4731
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4732 GTTTTGTTTGTTTTTGAGACAGGCTGACCTTGAGCTTGCTGTGTATGTAGCCCAGTGTCTTAGTGAGTGTTCTA 4805
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4806 TTACTGTGAAGCCACACCAAAACCACAGTGACTCTTACAAGGGAAGGCATTTAATTGGGGGCTCAGTCCATTTT 4879
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4880 CATGAAGGTGAAGATCGGGATGGCACGCAGGGAGACATGGCACTGGAGAGGTAGCTAAGAGTTGTACGTCTGAG 4953
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4954 TCTGCAGACAGCAGGAAGAGAGCCTCTAGACTTGGAATGGGCTTTGGAACCTCAGGGTCTACACCTAATGACAC 5027
Query 616 -------------------------------------------------------------------------- 615
Sbjct 5028 ACTTCCTCCAACAAGGCCACACCTCTTTGTCCTTTCATATAGTGCCCCTCTCTGGTGCCCAGTATACAACTCTG 5101
Query 616 -------------------------------------------------------------------------- 615
Sbjct 5102 TGAGCCTATGGAGGCCGTTCTCATTCAAACCACCACACTCAGTCTGGATTCCAGCTCCGGATCCTGCAGCCTTA 5175
Query 616 ------------------------------------------------------------------------- 615
Sbjct 5176 GCTTCCCCGGTGCTGGGATGGCAGACATGGGCCTCCACAATGCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT 5248
