Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- NR_110279.3
- Aligned Length:
- 4784
- Identities:
- 220
- Gaps:
- 4538
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGAGGCCAGATTCCGCATTGACTCAAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCGGCTCCTCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACACTGACCCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGGACAGACTGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATACACACACAGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGATTGTACGTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATTCCTCAGCGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGGTGTCAGTGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGCCGACCCTACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCACACACACAGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGGCATTTCTGAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACATTAAATTCTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GACTCCACATTATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGTACCTGACTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGTTCTTCACGTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTC 2960
Query 1 ----------------------------------------------ATGGAGTCTCGCTC-TGTTGCCCAGGCT 27
|||||||.|||||| |||||||||||||
Sbjct 2961 ACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCT 3034
Query 28 GGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCT 101
||||||||.||||...||||.||||||||||||||||||||||||.|||||||||||||||.||||||||||||
Sbjct 3035 GGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCT 3108
Query 102 CCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA--TTTTGTATTTTTGGTCGAGACGGGG-- 171
||.|||.||||||||.||.||.|||||||||||||.|.||||||| |||||||||||||.|.|||||||||
Sbjct 3109 CCTGAGCAGCTGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGG 3182
Query 172 -TTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATC--CACCACCTCGGCCTCCCAAAGT 242
|.| |||||||..||||||||||||||||||||.|||||||.|||||| | |||||||.||||||||||||
Sbjct 3183 CTCT--CCATGTTGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGC-CCACCTCAGCCTCCCAAAGT 3253
Query 243 GTTGAGA------------------------------------------------------------------- 249
..||.||
Sbjct 3254 CCTGGGATTACAGGCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCT 3327
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3328 GGTTGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTG 3401
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3402 GGTACATGAACTCTATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGC 3475
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3476 AGAGCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGG 3549
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3550 TCACAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATA 3623
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3624 TTAGTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGC 3697
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3698 CAACCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCC 3771
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3772 TCCTGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCC 3845
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3846 AGGCAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAAC 3919
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3920 ACCAGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGA 3993
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3994 TATTCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGC 4067
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4068 CAGCTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAG 4141
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4142 AACCATCACTGTAGGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGA 4215
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4216 ATACAGCATGAACAAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTT 4289
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4290 TTTTTACCTTTTAGTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAG 4363
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4364 GGCTGCCCAACACCTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAA 4437
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4438 CCTCACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCT 4511
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4512 GCTGTCCAATGGAAACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTG 4585
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4586 ATGCCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATC 4659
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4660 TGGGAAGCAGTATGCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAA 4733
Query 250 ------------------------------------------------ 249
Sbjct 4734 GTAAACTATATCTTCCATTTAGACAAATAAAATATCTTTTTGATAAAA 4781
