Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_001753371.1
- Aligned Length:
- 4206
- Identities:
- 217
- Gaps:
- 3959
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGAAAACCAGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTTTGGCAACCGTATGCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCAAAAGTCAGCAGGCAATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCTGGACTCTATCTACCTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATAAAGACTATGGAAATCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATTTGGAATTTATAATTTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGGGACACATTCTCCCAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCCTTTTAAATTTTCCCAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCCTGCCTGCTTTCCCTCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCCTAATTATTTCTCAACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAGGTCCTGGGCTGGGAATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATGAAGAAGGGAACCTAATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TAACCAGCCAGTGAGAAGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAGAGCCTGGAGGTCTCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGGCTTCTGGCACAGGTATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTCCTGAAAGCTCCCTCCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTTCTGTCTGATGACTCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGATATAACACATCCCCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGA 2664
Query 1 ------------------------ATGG-------------AGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGT 37
.||| ||||||..|||||..||||||||||||||||||
Sbjct 2665 TTTTTTTTTGTTTGTTTGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGT 2738
Query 38 GGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGC 111
|||..|||||.||||.|||||||||||||||||...||||||||.|||||||.|||||||||||||.|||||||
Sbjct 2739 GGCACGATCTTGGCTTACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGC 2812
Query 112 TGGGACTATAG--ACATGCACCACCACGCCCGGCTAA---------TTTTGTATTTTTGGTCGAGACGGGGTTT 174
|||||.||.|| ||.|| |||||||||||.||||| ||||||||||||.||.||||.|||||||
Sbjct 2813 TGGGATTACAGGCACCTG--CCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTT 2884
Query 175 TGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTGTTGA 247
|||||||||.||||||||||||||||||.|||||||||||||||||| .||.|||.|||||||||.||||.||.
Sbjct 2885 TGCCATGTTGGTCAGGCTGGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGG 2958
Query 248 GA------------------------------------------------------------------------ 249
||
Sbjct 2959 GATTACAGACATGAGCCACTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCA 3032
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3033 GCATAAAGCCTTACTTCAGTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCT 3106
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3107 ATGCATTCATAAGGCTTTTGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCT 3180
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3181 CACATTGTCCCCACTCATAAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTG 3254
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3255 TAGGATTTCCCACACCTGCTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGA 3328
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3329 GCTCTGGCTAAAGGATTTCCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGAC 3402
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3403 CAAGTCCATATTTGGAGCTCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGA 3476
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3477 GGTTCCTCAAAAAACTAAAAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAA 3550
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3551 AAGAAATCAGTACATTGAAGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTG 3624
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3625 GAAGTAACCCAAATGTCCATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATT 3698
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3699 CAGCCATAAAAAAGAATGAGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAA 3772
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3773 AATAATCCAGGCACAGAAAGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAA 3846
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3847 CTCATGGAGATAGAGAGTAGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTG 3920
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3921 GGGTGTTTAATGTGTCCAAAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGAC 3994
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3995 TATAGTCAATAATAATCGAATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAG 4068
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4069 GATAAATGCTTGAGGTGATGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGT 4142
Query 250 -------------------------------------------------------------- 249
Sbjct 4143 ATCCATATACCCCATGAATAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA 4204
