Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_936795.3
- Aligned Length:
- 5633
- Identities:
- 216
- Gaps:
- 5386
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGGGAAACCTTTGAGCTAAGATTGGACTGAAATGGCCTCAGGTGCTCTAATCAAATTGAGACCTGGTCCAATC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTGGGCCCCTAAACCAAAGGTGAATAAGGTGCCTGCCTAGCAGGAGGTTGTGACCTCCAGGCTGATGGTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGAGAGCTGGGAGTCTGGATGGAGCAGATGTAGGCAGACAACAGGATGAGATTTGAAGGCCACAGCTAAGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACATTGAAGATCAAGACCTGTGCTGTCCTCCATGGCAGTCACTGGGCACCTGGGGTTATTTCAGTTTATATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATGAAAACTAAATAGCTTTAAAAATTCAGTTCCTCAGTCACGCTAGCCACATTTTGAGTGCTCCATAGTCACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTGGCTAGCGGCTGCTATATTGGACAGTGCAGACACAGAATATTTTCACCATGTGCAGAAAGTTGTACTCAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACACGAGACAGACATATAAGGTTTTGAGTCCAGAAAACATCAAGTTGGAGAGAGGCAGTAGCAAGAAAAAAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCAACAATAAGGGGGACTGTGACCAAGAGGTCCCCACTCATTCATTCCATCCTTCCTTCATTCATCTCTTCAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTCACATTGATTGAGCTCCTATCAGGCACCCTCTATGACTGCAGGCTCCAGGGAAACACAAGAGAATTACACAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGTAGCCTCAGACCACACAGAGCTCACATTTAGTCTGAGGAGTCAGACCCTAAGGGAGGTAAATAAGTCACTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AACAAGACAATTCCAGAAAATAATAAATGCCAACATGAAAAGAGAGCAGGTAATAGGACACAGCGTCTTTGGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGAGGATCAGGCCTCAAGTTTGGGGAGACGTGTCATCTTTGGGCAGCTAAAAACTACAGGGCTCAGAAAACCTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACATACAGAAAGGAGAGGAATGCACTGCTCTATAGCCCACTCCCTGGAAGGCTGGGAAGCCCTGGTCCAGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGCACAGGGTTCTAGGAATTGGGAACGGGACCCAACCACAAGGACAGGAAGTGGACAGGGGCCTCCAGGAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGAGAAGAAACGAAGCACAGAAGTGGCCATGGGGCCATCATGGAGTCTGTTTCACGGACAGAAACACAAAGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTGTTAGGAACAGCCACCTCTGGCCAGCCCCGCCTGTGATTGTGACCTGACAACTCGTGGTTTGTGAAGGTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTGTTTCAGAGGCATTTCGCCTCTCTGCTTTTGGAACCTCCACGAGTGGACTTTTGTCTTGGGGCTCACAGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTACCCCCTTCAGGGAGGTGGCTGGTTGTAGTTTAGCAAAACAGCCACTGACATCGCTGCTCCTTCAGCCTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCAGACAGAGCTGCAAGATCCTCGAGGCCTTTTTAATCCCCAGAAACAAGGTGTTAAAACAGACCAAAATGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTCCCGCCCAGAAGCAAGCAAAGCCAACCCCAGCTGCAGTTCCCTGACAGTCCAGTGAATTCAGCCAAAGGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATGGCCCCACATGGAGGGCAAGTGACAGAAGACCTGATGACTCCGGTGGCTCAGCGGAGAGTGCATTAATAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTGACCACTTCTGCTCGATCTTCAGGCAAGCTGGGTCTGACCCCTGGACACTGTCCCCTGGAGCCCCTGGCCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCACGTGTCCACCCACTGCCATGGTCATGGCTCCTCAGCAGGAGGAGGCCCAGCAGCCTCCAGGTGCCCCTGCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGGTGCTAGCTGCCCACCGAAGCTCTAGCCTCACACTCTCAGGTTCAAATCCAGCGACAAGAGCGGATCCCACA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGGCCACGAGAGTCACCCTAAACGGTCAGCTTAGGTCCTTCGTTCACTGAGCCCATCGCTGTCCAGGGCAAGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGCTGGCTGGGCTAGGTCCAGCTCCCGTGTCCACCCTGGGACCTGAGGTTCAGGGTCAGCTCACCCTAGACA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CATGGATCGAGTGGGGAGGGTGAATCCTCAAATGCTAATCAGGTTCTGTTGTACAGAAGGGGAAGCGGAGGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAGGATGCAGCAAGACCTGTTCCCTCCTCTAACGGCACTCATAGGACAGCCCAGCCACACATTCAAAGAATCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAAGGAATAGGATGGTTGGTATGGTTGGTGTGGAAGAAGGTTCATAAATTCTGGATTTAGCTTTGTGGGATTCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCTGACCTGAAATTTATACCTGTGCAGGTAGGTGGTTGCTGGGTAGGGTGACCACTACTGTCTCTCTCCATCAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCAGGGCTGTTTTCAGCTCAAAGCCACAGAAGCCCAGGCATGGTGGCATCTCCGGGGGAAGTTGCCTTATTCCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATTCACAGGTCCGGGGCGAAGGGGCCAGGCAGGGCAGGTGTGGGGCGGCAGGATATCGCCCTGGGCCTGGCTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTCTGCCTTTCTGCCACCATCTTCAGCGGTGCCATTACCTCGAGGCCTTCTGTGGTTGCTGGAGCTGCCACGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCGGCCTCCTGTCTGCCTCCAGATGGGAGAGGAGGAAGGAGGAGGTGAGAGCAGGAAAGAGCTTACATAAAAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCACATTTTCCCAGAATCCCCAGCAGCTGCCTGTTCTCCCCCTCCACTGGGCTAGAGCTGTGTCACACAGGCTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGCGGCCAGGAAGCTGGGCACCATCCAGGGAGTGTGTGATCGTCGGGGTCCTGTTGATTCCTGCTTTTGAGTAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGAAGGTGACCAAACCACATGACCCTGTCTGCAAAGATTCCACCTGGACTCCCAGTTCCTCCAAGGAACCGTCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTGGTTCAAATCCAATGAAATTCTCTAAATCTCCACCCTCCTCAGGGTGCAGAGTTGGCTGCTTCTCTGTGCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCCTGCTGATCACGGCAACCCCTGGGTGCCTCGGCCTGCGAAGCCCCAGCTGTCCTCCGTCTGCAGACAAGCCG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGGTATGAAAGCCTCCTCGCTGGCCCAGGAGCCTGTCATTGTCCTCCAGCAGCTCTAGCCTGGATGCGGTCCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GAGATAAATCATATCTCTTTAAAAAGCCACAGTGGCCCATTATTTCTGCTTGAAAATACCCCTGGCTCTCTGCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTGAGCTGGTTGACAGGCCCCGGCTGTTGTGCTCAGTGCTGCAAAGAGTCACGTCAGTCTGTCGACTTGTGTA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GTGAGCAAGCTGGTAGCTTCAGATGGTATGCACATGAAATCCCGTCCTGGCATCCAGGACTTGGCTGGGGGTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGAGAGAACCACATCTGCAAAAGAGTTGGTATTTTACAGTCCCAGCCTCACGTCCTTGTGAAATGCCCTGTTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATACTGGGCTACAGGGGCGGGAGCAAAAATGATACAATGACAATTCCTGGGCTGTGTTCTGCAATATTCTACAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CACTTCCACAAGAAAACTCCAATCTTTAAAAATAGACTGAGCACAATTAAACAATCACTATAGATATTTCTTTT 3404
Query 1 ------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACT 56
||||||||||.||||||.||||||||||||||||||||||..||||||.|||||||
Sbjct 3405 CTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACT 3478
Query 57 GCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCAC 130
||||.|||.|||||||.||||||.||.|||||.|||||||||||.||.|||||||||||||||.||.|...|||
Sbjct 3479 GCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGACTACAGGCGCCCAC 3552
Query 131 CACCACGCCCGGCTAA---TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAA 201
|||||||||||||||| ||||||||||||.||.||||||||||||..|..||||||.||||.||||||.||.
Sbjct 3553 CACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGAT 3626
Query 202 CTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA------------------------- 249
|||||||||||| ||||||| ||.||||||||||||||||||.||.||
Sbjct 3627 CTCCTGACCTCA--TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCGCGCCCG 3698
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3699 GCCCACTATAGATATTTCAACCAGAGGAATATAGTGAATCATGATCTACCCATCACCCAGGTTCAACAGCTCTC 3772
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3773 AGGGTTTGCCCCCTTCCTTCCAGCTCTTTCCCCTCTTTCTGCCAAATTATTTTAAAGCAAATCCCAGACCTCAA 3846
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3847 GTGGACATTTTCTAACAAAGTTGCAATATCCTAAACATCTCCGATGTTCAAATTCCCCCAGGTGTTGCTCAGAT 3920
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3921 ATTTTTTTCTGGTTGCTTTTCCAGAAATTCAACAAGGACCACACGGCATTTGGTTGTTAAGTTTCTAACTTCTC 3994
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3995 TTTGGTTGACAGTGATCCCCTCTCCTTCATTTTACTTTTAATGCCACTGCTTGTTGAATTCCTGGGAGCAGTTG 4068
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4069 CTCTGTGGGATGCCCCACATCCAGGATTTGTCAGTCTGCTGCCTCATGGTGTCATTTCAATTCCTTCTGCAGAT 4142
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4143 GGATGCCGCTGGACATCCTTGCCAAGGTGTGTCAGTTTCAATTAAACCCAGAATGGGGTGTTGGAGCTCAAAGG 4216
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4217 AGCCATTGTCAAGCCATTGCCTGAGCAAAGGAAGGTGTTTTTTTTTTTTTTTCTTCCTGTCGCCCAGGCTGGAG 4290
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4291 TGCAGTGGTATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTTTG 4364
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4365 AGTAGCTGGGATTACAGGCATGTGCCACCATGCTCAGCTAATTTTTGTATTTTTTTAGTAGAGATGGGGTTTCA 4438
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4439 CCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATTTGCCTGCCGTGGCCTCCCAAAGTGCTGGGATT 4512
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4513 GCAGGTGTGAGCCACCGTGCCTGGCCTGTGTTTTAAGATGATTTCCTGGATTCTTGTTGAACTACCAAGGCAGG 4586
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4587 TGTTTGCTCCCAGGCTTCACCATCAAATTCCCTAACGGCTGTGTTCTGGGTTGAGTCACTTTAATGAGCTGCCC 4660
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4661 TGCCGTTCCCAGGTGAGATGTCAATTAGAATTTGCAATCCCAATACCAGGGCCACGTTCTCACCACCTGAAGAA 4734
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4735 ACCCTAACAGTCGAGACAGAATGAATGAAGGACAGATCAATGGGCTGGGTCTGTACAAGCACACCCATAGGGCA 4808
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4809 ACCCAAGGGCACGTTATTTTGGTCTGAGTTATCTCCTGAGTCATGGACATGAGTCTGGGAAGGTCAAGGTTCGC 4882
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4883 CTGTTATCGTTATGGAAAGACACTGACCTTATGTGCTGGGCTGTGCCGTGGGCGCCTTCTTATTACATCCTCAG 4956
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4957 AACAGCCTCAGGATGGCTCATGATTCCCTCAATCACAGATGAGGACCTGAGGCTCAGGAAAGATACATTTGCAT 5030
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5031 CTTGTAGGTCTGGGTTCAGCCTGGACCCACGGTTTCCATGCTTGCCCTGACCCTTCATTCCCTCCATTCCCTCC 5104
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5105 CAGCAGCCAGTCAGTGGCTGTCCAGACATGTGCACCAGCTGTGCTGCACCTCCACCATAAAAACTCCTCCAATC 5178
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5179 ACTTCCCACTGCTCCCCATGTGAACCCCAAGGGGGCTCACCCTGTCCCAGGAGGTTCTGCCTGATCCACACCCC 5252
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5253 CCACCCCTTCCTGCATCCCTGCAACCTGCTCTCCCTACGTCCTCAGTCCTGGCGTCCTCTCTGTTCCCTGGACT 5326
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5327 TGTCCAGCCCAGTCCTACCTCCAGGCCTTGGCACCTGCTGTGCCCTTGACCTGGCGTGATCTCCTGATGGCCGT 5400
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5401 TACTGGGCTGGAAACTTCTCAGTGCTCAGCTTGAGCTCAAAGCCCACCTCTTCAGAGAGGCTGTCCCCATCCAC 5474
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5475 TGTGGCCTTTCTTCCCTTTGCTCTTTCAATTCCCAGTTTATTTCCTGTAGAGCAGTTTCACCCTCTTCACCAAT 5548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5549 CTTGTTTATTTCCTTGTTTATTGTGCCTCCTTTACCAGAACGTTCACCCTCTGAGGGCCTGGGCCAGGTCTGTC 5622
Query 250 --------- 249
Sbjct 5623 TGTTCACAG 5631
