Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_936795.3
Aligned Length:
5633
Identities:
216
Gaps:
5386

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTGGGAAACCTTTGAGCTAAGATTGGACTGAAATGGCCTCAGGTGCTCTAATCAAATTGAGACCTGGTCCAATC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTGTGGGCCCCTAAACCAAAGGTGAATAAGGTGCCTGCCTAGCAGGAGGTTGTGACCTCCAGGCTGATGGTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGAGAGCTGGGAGTCTGGATGGAGCAGATGTAGGCAGACAACAGGATGAGATTTGAAGGCCACAGCTAAGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGACATTGAAGATCAAGACCTGTGCTGTCCTCCATGGCAGTCACTGGGCACCTGGGGTTATTTCAGTTTATATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AATGAAAACTAAATAGCTTTAAAAATTCAGTTCCTCAGTCACGCTAGCCACATTTTGAGTGCTCCATAGTCACA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTGGCTAGCGGCTGCTATATTGGACAGTGCAGACACAGAATATTTTCACCATGTGCAGAAAGTTGTACTCAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACACGAGACAGACATATAAGGTTTTGAGTCCAGAAAACATCAAGTTGGAGAGAGGCAGTAGCAAGAAAAAAAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCAACAATAAGGGGGACTGTGACCAAGAGGTCCCCACTCATTCATTCCATCCTTCCTTCATTCATCTCTTCAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTCACATTGATTGAGCTCCTATCAGGCACCCTCTATGACTGCAGGCTCCAGGGAAACACAAGAGAATTACACAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATGTAGCCTCAGACCACACAGAGCTCACATTTAGTCTGAGGAGTCAGACCCTAAGGGAGGTAAATAAGTCACTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AACAAGACAATTCCAGAAAATAATAAATGCCAACATGAAAAGAGAGCAGGTAATAGGACACAGCGTCTTTGGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGAGGATCAGGCCTCAAGTTTGGGGAGACGTGTCATCTTTGGGCAGCTAAAAACTACAGGGCTCAGAAAACCTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACATACAGAAAGGAGAGGAATGCACTGCTCTATAGCCCACTCCCTGGAAGGCTGGGAAGCCCTGGTCCAGGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAGCACAGGGTTCTAGGAATTGGGAACGGGACCCAACCACAAGGACAGGAAGTGGACAGGGGCCTCCAGGAAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGAGAAGAAACGAAGCACAGAAGTGGCCATGGGGCCATCATGGAGTCTGTTTCACGGACAGAAACACAAAGGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTGTTAGGAACAGCCACCTCTGGCCAGCCCCGCCTGTGATTGTGACCTGACAACTCGTGGTTTGTGAAGGTTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTTGTTTCAGAGGCATTTCGCCTCTCTGCTTTTGGAACCTCCACGAGTGGACTTTTGTCTTGGGGCTCACAGTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTTTACCCCCTTCAGGGAGGTGGCTGGTTGTAGTTTAGCAAAACAGCCACTGACATCGCTGCTCCTTCAGCCTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGCAGACAGAGCTGCAAGATCCTCGAGGCCTTTTTAATCCCCAGAAACAAGGTGTTAAAACAGACCAAAATGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCTCCCGCCCAGAAGCAAGCAAAGCCAACCCCAGCTGCAGTTCCCTGACAGTCCAGTGAATTCAGCCAAAGGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AATGGCCCCACATGGAGGGCAAGTGACAGAAGACCTGATGACTCCGGTGGCTCAGCGGAGAGTGCATTAATAGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTGACCACTTCTGCTCGATCTTCAGGCAAGCTGGGTCTGACCCCTGGACACTGTCCCCTGGAGCCCCTGGCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCACGTGTCCACCCACTGCCATGGTCATGGCTCCTCAGCAGGAGGAGGCCCAGCAGCCTCCAGGTGCCCCTGCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGGTGCTAGCTGCCCACCGAAGCTCTAGCCTCACACTCTCAGGTTCAAATCCAGCGACAAGAGCGGATCCCACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAGGCCACGAGAGTCACCCTAAACGGTCAGCTTAGGTCCTTCGTTCACTGAGCCCATCGCTGTCCAGGGCAAGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGTGCTGGCTGGGCTAGGTCCAGCTCCCGTGTCCACCCTGGGACCTGAGGTTCAGGGTCAGCTCACCCTAGACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CATGGATCGAGTGGGGAGGGTGAATCCTCAAATGCTAATCAGGTTCTGTTGTACAGAAGGGGAAGCGGAGGCAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGGATGCAGCAAGACCTGTTCCCTCCTCTAACGGCACTCATAGGACAGCCCAGCCACACATTCAAAGAATCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GAAGGAATAGGATGGTTGGTATGGTTGGTGTGGAAGAAGGTTCATAAATTCTGGATTTAGCTTTGTGGGATTCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCTGACCTGAAATTTATACCTGTGCAGGTAGGTGGTTGCTGGGTAGGGTGACCACTACTGTCTCTCTCCATCAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCAGGGCTGTTTTCAGCTCAAAGCCACAGAAGCCCAGGCATGGTGGCATCTCCGGGGGAAGTTGCCTTATTCCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GATTCACAGGTCCGGGGCGAAGGGGCCAGGCAGGGCAGGTGTGGGGCGGCAGGATATCGCCCTGGGCCTGGCTC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTTCTGCCTTTCTGCCACCATCTTCAGCGGTGCCATTACCTCGAGGCCTTCTGTGGTTGCTGGAGCTGCCACGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCGGCCTCCTGTCTGCCTCCAGATGGGAGAGGAGGAAGGAGGAGGTGAGAGCAGGAAAGAGCTTACATAAAAGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCACATTTTCCCAGAATCCCCAGCAGCTGCCTGTTCTCCCCCTCCACTGGGCTAGAGCTGTGTCACACAGGCTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGCGGCCAGGAAGCTGGGCACCATCCAGGGAGTGTGTGATCGTCGGGGTCCTGTTGATTCCTGCTTTTGAGTAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGAAGGTGACCAAACCACATGACCCTGTCTGCAAAGATTCCACCTGGACTCCCAGTTCCTCCAAGGAACCGTCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGTGGTTCAAATCCAATGAAATTCTCTAAATCTCCACCCTCCTCAGGGTGCAGAGTTGGCTGCTTCTCTGTGCC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCCTGCTGATCACGGCAACCCCTGGGTGCCTCGGCCTGCGAAGCCCCAGCTGTCCTCCGTCTGCAGACAAGCCG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AGGTATGAAAGCCTCCTCGCTGGCCCAGGAGCCTGTCATTGTCCTCCAGCAGCTCTAGCCTGGATGCGGTCCCA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GAGATAAATCATATCTCTTTAAAAAGCCACAGTGGCCCATTATTTCTGCTTGAAAATACCCCTGGCTCTCTGCT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GGTGAGCTGGTTGACAGGCCCCGGCTGTTGTGCTCAGTGCTGCAAAGAGTCACGTCAGTCTGTCGACTTGTGTA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GTGAGCAAGCTGGTAGCTTCAGATGGTATGCACATGAAATCCCGTCCTGGCATCCAGGACTTGGCTGGGGGTTG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGAGAGAACCACATCTGCAAAAGAGTTGGTATTTTACAGTCCCAGCCTCACGTCCTTGTGAAATGCCCTGTTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ATACTGGGCTACAGGGGCGGGAGCAAAAATGATACAATGACAATTCCTGGGCTGTGTTCTGCAATATTCTACAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CACTTCCACAAGAAAACTCCAATCTTTAAAAATAGACTGAGCACAATTAAACAATCACTATAGATATTTCTTTT  3404

Query    1  ------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACT  56
                              ||||||||||.||||||.||||||||||||||||||||||..||||||.|||||||
Sbjct 3405  CTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACT  3478

Query   57  GCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCAC  130
            ||||.|||.|||||||.||||||.||.|||||.|||||||||||.||.|||||||||||||||.||.|...|||
Sbjct 3479  GCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGACTACAGGCGCCCAC  3552

Query  131  CACCACGCCCGGCTAA---TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAA  201
            ||||||||||||||||   ||||||||||||.||.||||||||||||..|..||||||.||||.||||||.||.
Sbjct 3553  CACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGAT  3626

Query  202  CTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA-------------------------  249
            ||||||||||||  ||||||| ||.||||||||||||||||||.||.||                         
Sbjct 3627  CTCCTGACCTCA--TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCGCGCCCG  3698

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3699  GCCCACTATAGATATTTCAACCAGAGGAATATAGTGAATCATGATCTACCCATCACCCAGGTTCAACAGCTCTC  3772

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3773  AGGGTTTGCCCCCTTCCTTCCAGCTCTTTCCCCTCTTTCTGCCAAATTATTTTAAAGCAAATCCCAGACCTCAA  3846

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3847  GTGGACATTTTCTAACAAAGTTGCAATATCCTAAACATCTCCGATGTTCAAATTCCCCCAGGTGTTGCTCAGAT  3920

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3921  ATTTTTTTCTGGTTGCTTTTCCAGAAATTCAACAAGGACCACACGGCATTTGGTTGTTAAGTTTCTAACTTCTC  3994

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3995  TTTGGTTGACAGTGATCCCCTCTCCTTCATTTTACTTTTAATGCCACTGCTTGTTGAATTCCTGGGAGCAGTTG  4068

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4069  CTCTGTGGGATGCCCCACATCCAGGATTTGTCAGTCTGCTGCCTCATGGTGTCATTTCAATTCCTTCTGCAGAT  4142

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4143  GGATGCCGCTGGACATCCTTGCCAAGGTGTGTCAGTTTCAATTAAACCCAGAATGGGGTGTTGGAGCTCAAAGG  4216

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4217  AGCCATTGTCAAGCCATTGCCTGAGCAAAGGAAGGTGTTTTTTTTTTTTTTTCTTCCTGTCGCCCAGGCTGGAG  4290

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4291  TGCAGTGGTATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTTTG  4364

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4365  AGTAGCTGGGATTACAGGCATGTGCCACCATGCTCAGCTAATTTTTGTATTTTTTTAGTAGAGATGGGGTTTCA  4438

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4439  CCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATTTGCCTGCCGTGGCCTCCCAAAGTGCTGGGATT  4512

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4513  GCAGGTGTGAGCCACCGTGCCTGGCCTGTGTTTTAAGATGATTTCCTGGATTCTTGTTGAACTACCAAGGCAGG  4586

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4587  TGTTTGCTCCCAGGCTTCACCATCAAATTCCCTAACGGCTGTGTTCTGGGTTGAGTCACTTTAATGAGCTGCCC  4660

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4661  TGCCGTTCCCAGGTGAGATGTCAATTAGAATTTGCAATCCCAATACCAGGGCCACGTTCTCACCACCTGAAGAA  4734

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4735  ACCCTAACAGTCGAGACAGAATGAATGAAGGACAGATCAATGGGCTGGGTCTGTACAAGCACACCCATAGGGCA  4808

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4809  ACCCAAGGGCACGTTATTTTGGTCTGAGTTATCTCCTGAGTCATGGACATGAGTCTGGGAAGGTCAAGGTTCGC  4882

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4883  CTGTTATCGTTATGGAAAGACACTGACCTTATGTGCTGGGCTGTGCCGTGGGCGCCTTCTTATTACATCCTCAG  4956

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4957  AACAGCCTCAGGATGGCTCATGATTCCCTCAATCACAGATGAGGACCTGAGGCTCAGGAAAGATACATTTGCAT  5030

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5031  CTTGTAGGTCTGGGTTCAGCCTGGACCCACGGTTTCCATGCTTGCCCTGACCCTTCATTCCCTCCATTCCCTCC  5104

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5105  CAGCAGCCAGTCAGTGGCTGTCCAGACATGTGCACCAGCTGTGCTGCACCTCCACCATAAAAACTCCTCCAATC  5178

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5179  ACTTCCCACTGCTCCCCATGTGAACCCCAAGGGGGCTCACCCTGTCCCAGGAGGTTCTGCCTGATCCACACCCC  5252

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5253  CCACCCCTTCCTGCATCCCTGCAACCTGCTCTCCCTACGTCCTCAGTCCTGGCGTCCTCTCTGTTCCCTGGACT  5326

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5327  TGTCCAGCCCAGTCCTACCTCCAGGCCTTGGCACCTGCTGTGCCCTTGACCTGGCGTGATCTCCTGATGGCCGT  5400

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5401  TACTGGGCTGGAAACTTCTCAGTGCTCAGCTTGAGCTCAAAGCCCACCTCTTCAGAGAGGCTGTCCCCATCCAC  5474

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5475  TGTGGCCTTTCTTCCCTTTGCTCTTTCAATTCCCAGTTTATTTCCTGTAGAGCAGTTTCACCCTCTTCACCAAT  5548

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5549  CTTGTTTATTTCCTTGTTTATTGTGCCTCCTTTACCAGAACGTTCACCCTCTGAGGGCCTGGGCCAGGTCTGTC  5622

Query  250  ---------  249
                     
Sbjct 5623  TGTTCACAG  5631

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